View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13375_low_5 (Length: 623)
Name: NF13375_low_5
Description: NF13375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13375_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 110; Significance: 4e-55; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 470 - 602
Target Start/End: Original strand, 8246752 - 8246885
Alignment:
| Q |
470 |
atataaatgaaataagactcctgaaaatgcacatatataataaaaagtt-taatcttagaaaaagaagaaagatcaatccgacaaaatgcataaacacca |
568 |
Q |
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| T |
8246752 |
atataaatgaaataagactcctgaaaatgcacatatataataaaaaaaaataatcttagaaaaagaagaaagatcaatccgaaaaaatgcataaacacca |
8246851 |
T |
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| Q |
569 |
taagcagaattgttaaaaagaaatgctaatgttg |
602 |
Q |
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| T |
8246852 |
taagcagaattgttaaaaagaaatgctaatgttg |
8246885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 66 - 220
Target Start/End: Original strand, 8447640 - 8447806
Alignment:
| Q |
66 |
ttcctcttgtgtcttttgattcatgttgttattatggaactacaaaatatatattctttgatcatttagatgcataagaaacaaat-------------a |
152 |
Q |
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| T |
8447640 |
ttcctcttgtgtcttttgatccatgttgttattatgga-ctacaaaatatatattctttgatcatttatatgcagaagaaacaaattaaaacattcttga |
8447738 |
T |
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| Q |
153 |
aaagaaaattaaattattgcaaggaaaccgtttgtatatagaaatgttttgaaaagaggagttgaaat |
220 |
Q |
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| T |
8447739 |
caagaaaattaaattattgaaaggaaaccatcaatatacagaaatgttttaaaaagaggaattgaaat |
8447806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 104 - 220
Target Start/End: Original strand, 8235764 - 8235893
Alignment:
| Q |
104 |
actacaaaatatatattctttgatcatttagatgcataagaaacaaat-------------aaaagaaaattaaattattgcaaggaaaccgtttgtata |
190 |
Q |
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| T |
8235764 |
actacaaaatatatattctttgatcatttagatgcagaagaaacaaatcaacgcattcttgaaaagaaaattaaattattgcaaggaaaccatctatcta |
8235863 |
T |
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| Q |
191 |
tagaaatgttttgaaaagaggagttgaaat |
220 |
Q |
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| T |
8235864 |
tagcaatgtttttaaaagaggagttgaaat |
8235893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 341 - 414
Target Start/End: Original strand, 8448040 - 8448113
Alignment:
| Q |
341 |
aaacttccatgttattagaatgaaaccaaccgacgaactgattggttctcgattcaacttgattgattccgtag |
414 |
Q |
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| T |
8448040 |
aaacttcaatgttacgtgaatgaaactaacctacaaattgattggttctcgattcaacttgattgattcggtag |
8448113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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