View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13375_low_6 (Length: 585)
Name: NF13375_low_6
Description: NF13375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13375_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 13 - 352
Target Start/End: Complemental strand, 37272928 - 37272589
Alignment:
| Q |
13 |
atcatcagacaaccgtggtttagcacttttgttaccattaattccagccattgcttgggttctgtacaacattcttcaaccagcacttaaccaaatcaac |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37272928 |
atcatcagacaaccgtggtttagcacttttgttaccattaattccagccatagcttgggttctgtacaacattcttcaaccagcacttaaccaaatcaac |
37272829 |
T |
|
| Q |
113 |
cgtatgcgtaacgataaaggagttataattggtttaggtcttgggggtgggttagcagcttcagggtttgtatcaacacaagatgcaattgctagtgaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37272828 |
cgtatgcgtaacgataaaggagttataattggtttaggtcttgggggtgggttagcagcttcagggtttgtatcaacacaagatgcaattgctagtgaaa |
37272729 |
T |
|
| Q |
213 |
tggctgcaattgctgaagctgctggtagtgataacaggggtcagcttctgttgtttgttgtagcaccagctattctttgggttctttataatattttgca |
312 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37272728 |
tgactgcaattgctgaagctgctggtagtgataacaggggtcagcttctgttgtttgtggtaacaccagctattctttgggttctttataatattttgca |
37272629 |
T |
|
| Q |
313 |
gcctgctcttaaccaaatcaacagaatgagacagtgaaac |
352 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
37272628 |
gcctgctcttaaccaaatcaacagaatgagacagtgaaac |
37272589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 395 - 565
Target Start/End: Complemental strand, 37272547 - 37272377
Alignment:
| Q |
395 |
atgggatacataaaccattcatttctcttgtaacatgtatatttttaatgctatataaatcattctgttgtttgtgnnnnnnngtctttctgaatatata |
494 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37272547 |
atgggatatataaaccattcatttctcttgtaacatgtatatttttaatgctatataaatcattctgttgtttgtgtttttttgtctttctgaatatata |
37272448 |
T |
|
| Q |
495 |
ttctgttaggaattagttaagattgttaaaattggttagcatttagtttgctagttaagaatcactccagt |
565 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37272447 |
ttctgttaggaattagttaagattgttaaaattggttagcatttagtttgctagttaagaatcactccagt |
37272377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 395 - 565
Target Start/End: Complemental strand, 37268501 - 37268331
Alignment:
| Q |
395 |
atgggatacataaaccattcatttctcttgtaacatgtatatttttaatgctatataaatcattctgttgtttgtgnnnnnnngtctttctgaatatata |
494 |
Q |
| |
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|||||||| ||||| ||||||| | |||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
37268501 |
atgggatatataaatcattcatatttcttgtaacatgtatattttcaatgctatataaatcattctgttgtctgtgtttttttatctttctgaatatata |
37268402 |
T |
|
| Q |
495 |
ttctgttaggaattagttaagattgttaaaattggttagcatttagtttgctagttaagaatcactccagt |
565 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||||||||||||| | |||||||| |||||| |
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|
| T |
37268401 |
ttctgttaggaattagttaagattgttagagttggttagcatttagtttgctattcaagaatcattccagt |
37268331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 248 - 352
Target Start/End: Complemental strand, 37268655 - 37268551
Alignment:
| Q |
248 |
aggggtcagcttctgttgtttgttgtagcaccagctattctttgggttctttataatattttgcagcctgctcttaaccaaatcaacagaatgagacagt |
347 |
Q |
| |
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|||| |||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37268655 |
agggctcagcttctgttatttgtggttgcaccagctattctttgggttctttataatattttgcagcctgctcttaaccaaatcaacagaatgagacggt |
37268556 |
T |
|
| Q |
348 |
gaaac |
352 |
Q |
| |
|
||||| |
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|
| T |
37268555 |
gaaac |
37268551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 20580981 - 20580779
Alignment:
| Q |
13 |
atcatcagacaaccgtggtttagcacttttgttaccattaattccagccattgcttgggttctgtacaacattcttcaaccagcacttaaccaaatcaac |
112 |
Q |
| |
|
||||||||||||||| |||| ||||||| |||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
20580981 |
atcatcagacaaccgcggttaagcacttctgttaccattaattccagccatagcttcggttctgttcaacattcttcaaccagcacttaaccaaatcaac |
20580882 |
T |
|
| Q |
113 |
cgtatgcgtaacgataaaggagttataattggtttaggtcttgggggtgggttagcagcttcagggtttgtatcaacacaagatgcaattgctagtgaaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
20580881 |
cgtatgcgtaacgataaaggagttatcattggtttgggtcttggtggtgggttagcagcttcagggtttgtgtcaacacaagatgcaatggctagtgaaa |
20580782 |
T |
|
| Q |
213 |
tgg |
215 |
Q |
| |
|
||| |
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|
| T |
20580781 |
tgg |
20580779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 230 - 343
Target Start/End: Complemental strand, 39017088 - 39016975
Alignment:
| Q |
230 |
gctgctggtagtgataacaggggtcagcttctgttgtttgttgtagcaccagctattctttgggttctttataatattttgcagcctgctcttaaccaaa |
329 |
Q |
| |
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|||||||| ||||| |||||||| ||||||||||||||||| ||||||||||| |||||||| || || |||||||||||||||||||| ||||| | |
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| T |
39017088 |
gctgctggaagtgacaacaggggaacacttctgttgtttgttgttgcaccagctatcctttgggtgctgtacaatattttgcagcctgctctcaaccaga |
39016989 |
T |
|
| Q |
330 |
tcaacagaatgaga |
343 |
Q |
| |
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||||||| |||||| |
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|
| T |
39016988 |
tcaacaggatgaga |
39016975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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