View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13375_low_7 (Length: 574)

Name: NF13375_low_7
Description: NF13375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13375_low_7
NF13375_low_7
[»] chr7 (23 HSPs)
chr7 (1-564)||(41765189-41765749)
chr7 (196-564)||(41757298-41757666)
chr7 (1-81)||(48928674-48928754)
chr7 (1-60)||(48928407-48928466)
chr7 (1-76)||(5657592-5657667)
chr7 (3-80)||(26524440-26524517)
chr7 (8-76)||(8861260-8861328)
chr7 (1-76)||(4582894-4582969)
chr7 (12-74)||(8299192-8299254)
chr7 (31-81)||(18797299-18797349)
chr7 (1-51)||(29173540-29173590)
chr7 (8-76)||(6546494-6546562)
chr7 (1-60)||(22687230-22687289)
chr7 (1-60)||(25691656-25691715)
chr7 (31-82)||(40381934-40381985)
chr7 (1-75)||(24211717-24211791)
chr7 (1-39)||(35353120-35353158)
chr7 (31-60)||(3953747-3953776)
chr7 (1-50)||(12165753-12165802)
chr7 (1-78)||(12390741-12390818)
chr7 (12-77)||(21991610-21991675)
chr7 (31-60)||(23402374-23402403)
chr7 (1-78)||(32821164-32821241)
[»] chr3 (19 HSPs)
chr3 (1-81)||(22450954-22451034)
chr3 (1-76)||(4015451-4015526)
chr3 (1-60)||(11357475-11357534)
chr3 (1-79)||(21193594-21193672)
chr3 (1-78)||(33378895-33378969)
chr3 (1-60)||(52041033-52041092)
chr3 (8-65)||(40935993-40936050)
chr3 (31-78)||(40640637-40640684)
chr3 (21-78)||(35844315-35844372)
chr3 (1-60)||(43975998-43976054)
chr3 (1-74)||(46297872-46297945)
chr3 (1-78)||(48354930-48355007)
chr3 (1-77)||(40552369-40552445)
chr3 (2-60)||(53229264-53229322)
chr3 (12-78)||(55343405-55343471)
chr3 (3-60)||(25579746-25579803)
chr3 (1-78)||(34132924-34133001)
chr3 (31-76)||(51213121-51213166)
chr3 (1-53)||(44186611-44186663)
[»] chr6 (10 HSPs)
chr6 (1-75)||(20768087-20768161)
chr6 (1-77)||(8513232-8513308)
chr6 (1-83)||(7235143-7235225)
chr6 (1-74)||(6088910-6088983)
chr6 (1-77)||(3880048-3880124)
chr6 (2-78)||(18498431-18498507)
chr6 (8-78)||(4318939-4319009)
chr6 (1-60)||(33618850-33618909)
chr6 (8-74)||(30353474-30353540)
chr6 (31-78)||(19631747-19631794)
[»] chr1 (21 HSPs)
chr1 (442-538)||(26973139-26973235)
chr1 (1-78)||(16415639-16415716)
chr1 (1-60)||(14758053-14758112)
chr1 (1-78)||(15168083-15168160)
chr1 (1-76)||(3309144-3309219)
chr1 (8-78)||(11742462-11742532)
chr1 (21-78)||(1547281-1547338)
chr1 (12-76)||(38823210-38823274)
chr1 (1-60)||(7079179-7079238)
chr1 (21-76)||(21289661-21289716)
chr1 (1-60)||(31621658-31621717)
chr1 (10-60)||(27533094-27533144)
chr1 (1-74)||(33725705-33725778)
chr1 (1-78)||(39393377-39393454)
chr1 (5-77)||(2959743-2959815)
chr1 (30-78)||(4150489-4150537)
chr1 (1-60)||(4330291-4330351)
chr1 (1-60)||(47279201-47279260)
chr1 (1-78)||(3534926-3535003)
chr1 (21-74)||(15752027-15752080)
chr1 (31-76)||(43579242-43579287)
[»] chr4 (29 HSPs)
chr4 (5-76)||(28003126-28003197)
chr4 (3-78)||(38011852-38011927)
chr4 (1-77)||(35025724-35025800)
chr4 (1-60)||(33816669-33816728)
chr4 (1-78)||(35021171-35021248)
chr4 (31-80)||(38812263-38812312)
chr4 (1-74)||(47253751-47253824)
chr4 (8-60)||(7703533-7703585)
chr4 (1-60)||(5048101-5048160)
chr4 (8-79)||(27396613-27396684)
chr4 (1-60)||(34948233-34948292)
chr4 (8-78)||(29584341-29584411)
chr4 (1-51)||(54499375-54499425)
chr4 (10-79)||(17272008-17272077)
chr4 (1-54)||(32579466-32579519)
chr4 (1-78)||(32912716-32912793)
chr4 (1-77)||(25184112-25184188)
chr4 (1-60)||(49375982-49376042)
chr4 (12-76)||(55241251-55241315)
chr4 (7-79)||(55478037-55478109)
chr4 (31-74)||(20097494-20097537)
chr4 (1-76)||(39397918-39397993)
chr4 (12-78)||(4205114-4205180)
chr4 (31-80)||(2704508-2704557)
chr4 (1-78)||(7152242-7152319)
chr4 (1-78)||(25701193-25701270)
chr4 (1-78)||(30002760-30002837)
chr4 (21-78)||(34361647-34361704)
chr4 (31-76)||(38811813-38811858)
[»] chr5 (26 HSPs)
chr5 (1-78)||(8741987-8742064)
chr5 (1-76)||(14409426-14409501)
chr5 (8-78)||(19119857-19119927)
chr5 (3-74)||(25501028-25501099)
chr5 (8-83)||(27330299-27330374)
chr5 (1-60)||(33908249-33908308)
chr5 (1-57)||(5837574-5837630)
chr5 (12-60)||(22980809-22980857)
chr5 (8-60)||(26268090-26268142)
chr5 (1-76)||(7693230-7693305)
chr5 (3-82)||(8466739-8466818)
chr5 (1-83)||(13956445-13956527)
chr5 (1-79)||(36860420-36860498)
chr5 (1-76)||(16004476-16004552)
chr5 (1-77)||(35933901-35933977)
chr5 (1-76)||(15724490-15724565)
chr5 (1-52)||(22019656-22019707)
chr5 (31-78)||(22616492-22616539)
chr5 (1-60)||(30969424-30969483)
chr5 (1-76)||(40133385-40133460)
chr5 (2-76)||(31786747-31786821)
chr5 (1-77)||(8436965-8437041)
chr5 (1-77)||(9200232-9200308)
chr5 (31-75)||(10237415-10237459)
chr5 (12-76)||(36866762-36866826)
chr5 (1-77)||(39572818-39572894)
[»] chr8 (20 HSPs)
chr8 (1-76)||(33906223-33906298)
chr8 (1-77)||(27082954-27083030)
chr8 (1-76)||(13307622-13307697)
chr8 (1-82)||(36695082-36695163)
chr8 (1-60)||(1204942-1205001)
chr8 (8-79)||(24823395-24823466)
chr8 (1-78)||(34894964-34895041)
chr8 (1-78)||(38643975-38644052)
chr8 (1-78)||(43643711-43643788)
chr8 (8-76)||(5300069-5300137)
chr8 (1-77)||(16446991-16447067)
chr8 (1-77)||(34952147-34952223)
chr8 (1-60)||(37970635-37970694)
chr8 (1-87)||(1150221-1150306)
chr8 (12-78)||(40862416-40862482)
chr8 (36-77)||(7998361-7998402)
chr8 (1-78)||(9864145-9864222)
chr8 (30-74)||(6446708-6446752)
chr8 (12-76)||(15009241-15009305)
chr8 (38-78)||(39099262-39099302)
[»] chr2 (14 HSPs)
chr2 (1-76)||(41465509-41465584)
chr2 (1-78)||(18494396-18494473)
chr2 (1-76)||(19313852-19313927)
chr2 (1-75)||(13711465-13711539)
chr2 (8-82)||(36641980-36642054)
chr2 (1-77)||(4264205-4264281)
chr2 (1-77)||(19424756-19424832)
chr2 (12-79)||(4166919-4166986)
chr2 (1-82)||(33551114-33551195)
chr2 (1-60)||(26357593-26357652)
chr2 (31-60)||(6177791-6177820)
chr2 (5-77)||(17054228-17054300)
chr2 (21-77)||(17071885-17071941)
chr2 (8-60)||(44285965-44286017)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-77)||(42347-42423)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-77)||(133-209)


Alignment Details
Target: chr7 (Bit Score: 461; Significance: 0; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 564
Target Start/End: Original strand, 41765189 - 41765749
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttccttaattattaacattgcaatattg 100  Q
    |||||||||||||||||| ||||||| | ||||| | ||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||    
T  41765189 actcactacacttttgatgctatagtattgactttatcagaaaagtcattctcatgacttcaccatggaattttccttaattat-aacattgcaatattg 41765287  T
Q  101 ---atgttacacaaacgcttttttaaaatgttgtgacctacactgtggtatacaatttttgtgctgcttctattttcaggggccagaggtctcgaatgca 197  Q
       |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||     ||||||||||||||||||||||||||||||||||    
T  41765288 cacatgttacacaaaagcttttttaaaatgttgtgacctacattgtggtatacaatttttg-----cttctattttcaggggccagaggtctcgaatgca 41765382  T
Q  198 gttccaaacttgtacaagaattcgattcgtgcgttttgcaatgccaacacctcagaggaattcaagccagtaaaagatgtatctattccagaaatcaatg 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  41765383 gttccaaacttgtacaagaattcgattcgtgcgttttgcaatgccaacacctcagagggattcaagccagtaaaagatgtatctattccagaaatcaatg 41765482  T
Q  298 ttcgaaccggcataattgatgatcttcttggtggaccatcaccatctaagagatcaattttggctttcttcgctggtgggcttcatggggatattaggaa 397  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41765483 ttcgaaccggcataattgatgatcttcttggcggaccatcaccatctaagagatcaattttggctttcttcgctggtgggcttcatggggatattaggaa 41765582  T
Q  398 tgttctacttgaacatcgggaacacaaagatgaagatattcaagttcacaagtaccttccaaagggtgtgtcttactatgatatgttgagaaaaagcaag 497  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41765583 tgttctacttgaacattgggaacacaaagatgaagatattcaagttcacaagtaccttccaaagggtgtgtcttactatgctatgttgagaaaaagcaag 41765682  T
Q  498 ttctgtctttgtcctagtgggtacgaggttgcaagtccaagagtggtggaagcaatatacacaggtt 564  Q
    || |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  41765683 ttttgtctttgtcctagtgggtgggaggttgcaagtccaagagtggtggaagcaatatacacaggtt 41765749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 196 - 564
Target Start/End: Original strand, 41757298 - 41757666
Alignment:
Q  196 cagttccaaacttgtacaagaattcgattcgtgcgttttgcaatgccaacacctcagaggaattcaagccagtaaaagatgtatctattccagaaatcaa 295  Q
    ||||||||||||||||||| ||||| || || ||| |||||||||| ||||| ||||||| ||||||||| | ||| ||||||||||||||||||| |||    
T  41757298 cagttccaaacttgtacaaaaattcaatccgagcgctttgcaatgcgaacacatcagagggattcaagcctgcaaaggatgtatctattccagaaaccaa 41757397  T
Q  296 tgttcgaaccggcataattgatgatcttcttggtggaccatcaccatctaagagatcaattttggctttcttcgctggtgggcttcatggggatattagg 395  Q
    | ||| |||||| | |||  ||| | || |||| || ||||||||||||||| ||||| |||||||||||||||| |||||| ||||||||    |||||    
T  41757398 tcttcaaaccggtacaatacatggtattgttggcgggccatcaccatctaagcgatcagttttggctttcttcgccggtggggttcatgggcccgttagg 41757497  T
Q  396 aatgttctacttgaacatcgggaacacaaagatgaagatattcaagttcacaagtaccttccaaagggtgtgtcttactatgatatgttgagaaaaagca 495  Q
      |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41757498 cctgttctacttgaacattgggaacacaaagatgaagatcttcaagttcacaagtaccttccaaagggtgtgtcttactatgatatgttaagaaaaagca 41757597  T
Q  496 agttctgtctttgtcctagtgggtacgaggttgcaagtccaagagtggtggaagcaatatacacaggtt 564  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41757598 agttctgtctttgtcctagtgggtacgaggttgcaagtccaagagtggtggaagcaatatacacaggtt 41757666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 48928674 - 48928754
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttccttaat 81  Q
    ||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||| || ||  ||||||| |||||    
T  48928674 actcactacacttttgatgttatagtgttgacttcaccagaaaagtcattctcatgacttcaccataaaattttctttaat 48928754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 48928407 - 48928466
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgactt 60  Q
    ||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||    
T  48928407 actcactacacttttgatgttatagtgttgacttcaccagaaaagtcattctcatgactt 48928466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 5657592 - 5657667
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcc 76  Q
    |||||| |||||||||||  ||||||||  ||||||| |||||||||||||||||||||| || || |||||||||    
T  5657592 actcacaacacttttgatgttatagtgttaacttcactagaaaagtcattctcatgacttcaccatagaattttcc 5657667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 26524440 - 26524517
Alignment:
Q  3 tcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttccttaa 80  Q
    |||| ||| |||||||  ||||||||  || ||||||||||||||||||||||||||| || || |||||||||||||    
T  26524440 tcacaacatttttgatgttatagtgttaacatcaccagaaaagtcattctcatgacttcaccatagaattttccttaa 26524517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 8861328 - 8861260
Alignment:
Q  8 acacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcc 76  Q
    ||||||||||| |||||||||  ||||| | |||||||||||||||||||||| || || |||||||||    
T  8861328 acacttttgatgctatagtgttaacttcgcgagaaaagtcattctcatgacttcaccatagaattttcc 8861260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 4582969 - 4582894
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcc 76  Q
    |||||| ||| ||||||||||||||| |  |||||||||||||||||||| || |||||| || || |||||||||    
T  4582969 actcacaacatttttgatactatagtattaacttcaccagaaaagtcattttcgtgacttcaccatagaattttcc 4582894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 8299254 - 8299192
Alignment:
Q  12 ttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaatttt 74  Q
    |||||||||||||||||  |||||||||||||||||||| || |||||| || || |||||||    
T  8299254 ttttgatactatagtgttaacttcaccagaaaagtcattttcgtgacttcaccatagaatttt 8299192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 18797349 - 18797299
Alignment:
Q  31 acttcaccagaaaagtcattctcatgacttgacaatggaattttccttaat 81  Q
    ||||||||| |||||||||||||||||||| || || ||||||||||||||    
T  18797349 acttcaccaaaaaagtcattctcatgacttcaccatagaattttccttaat 18797299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 29173590 - 29173540
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattc 51  Q
    |||||| ||||||||||||||| |||||  |||||||||||||||||||||    
T  29173590 actcacaacacttttgatactacagtgttaacttcaccagaaaagtcattc 29173540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 6546562 - 6546494
Alignment:
Q  8 acacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcc 76  Q
    ||||||||||| |||||||||  ||||||| |||||| ||||||| ||||||| || || |||||||||    
T  6546562 acacttttgatgctatagtgttaacttcactagaaaaatcattcttatgacttcaccatagaattttcc 6546494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 22687289 - 22687230
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgactt 60  Q
    |||||| ||| |||||||  ||||||||  |||||| |||||||||||||||||||||||    
T  22687289 actcacaacatttttgatgttatagtgttaacttcatcagaaaagtcattctcatgactt 22687230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 25691656 - 25691715
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgactt 60  Q
    |||||| | |||||||||  ||||||||  ||||||| ||||||||||||||||||||||    
T  25691656 actcacaatacttttgatgttatagtgttaacttcacgagaaaagtcattctcatgactt 25691715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 40381985 - 40381934
Alignment:
Q  31 acttcaccagaaaagtcattctcatgacttgacaatggaattttccttaatt 82  Q
    ||||||||||||||||||||||||| |||| ||  | |||||||||||||||    
T  40381985 acttcaccagaaaagtcattctcataacttcaccgtagaattttccttaatt 40381934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 24211791 - 24211717
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttc 75  Q
    ||||| |||| |||||||  ||||||||  ||||||||| |||||||||||| ||||||| || || ||||||||    
T  24211791 actcattacatttttgatgttatagtgttaacttcaccaaaaaagtcattcttatgacttcaccatagaattttc 24211717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 35353158 - 35353120
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcacca 39  Q
    |||||||||||||||||| ||||||||| ||||||||||    
T  35353158 actcactacacttttgatgctatagtgttgacttcacca 35353120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 60
Target Start/End: Complemental strand, 3953776 - 3953747
Alignment:
Q  31 acttcaccagaaaagtcattctcatgactt 60  Q
    ||||||||||||||||||||||||||||||    
T  3953776 acttcaccagaaaagtcattctcatgactt 3953747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 12165802 - 12165753
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcatt 50  Q
    |||||| ||||||| ||| |||||||||  ||||||||||||||||||||    
T  12165802 actcacaacactttggatgctatagtgttaacttcaccagaaaagtcatt 12165753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 12390741 - 12390818
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctt 78  Q
    ||||| ||||||||||||  ||||||||  ||||||||| |||||||  ||| ||||||| || || |||||||||||    
T  12390741 actcattacacttttgatgttatagtgttaacttcaccaaaaaagtcgatctgatgacttcaccatagaattttcctt 12390818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 21991675 - 21991610
Alignment:
Q  12 ttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcct 77  Q
    ||||||| |||||||||  ||||||||| |||| ||||||||||||||| ||  | ||||||||||    
T  21991675 ttttgatgctatagtgttaacttcaccataaaaatcattctcatgacttcaccctagaattttcct 21991610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 60
Target Start/End: Original strand, 23402374 - 23402403
Alignment:
Q  31 acttcaccagaaaagtcattctcatgactt 60  Q
    ||||||||||||||||||||||||||||||    
T  23402374 acttcaccagaaaagtcattctcatgactt 23402403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 32821164 - 32821241
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctt 78  Q
    |||||||||| |||||||  |||| |||  ||||||||| |||| ||||| ||||||||| || || |||||||||||    
T  32821164 actcactacatttttgatgttatattgttaacttcaccaaaaaaatcattttcatgacttcaccatagaattttcctt 32821241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 22451034 - 22450954
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttccttaat 81  Q
    |||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||| || || ||||||||||||||    
T  22451034 actcactacacttttgatgctatagtgttgacttcaccagaaaaatcattctcatgacttcaccatagaattttccttaat 22450954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 4015526 - 4015451
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcc 76  Q
    |||||| ||||||||||| |||||||||  |||||| ||||||||||||||||||||||| || || |||||||||    
T  4015526 actcacaacacttttgatgctatagtgttaacttcatcagaaaagtcattctcatgacttcaccatagaattttcc 4015451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 11357475 - 11357534
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgactt 60  Q
    |||||||| ||||||||| |||||||||  ||||||||||||||||||||||||||||||    
T  11357475 actcactatacttttgatgctatagtgttaacttcaccagaaaagtcattctcatgactt 11357534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 21193672 - 21193594
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctta 79  Q
    |||||| ||||||||||| | | |||||  |||||||||||||||||||||||||||||| || || ||||||||||||    
T  21193672 actcacaacacttttgattcaacagtgttaacttcaccagaaaagtcattctcatgactttaccatagaattttcctta 21193594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 33378895 - 33378969
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctt 78  Q
    |||||||||||||||||||||||||||| ||||||||   ||||||||||||||| ||||  | || |||||||||||    
T  33378895 actcactacacttttgatactatagtgttgacttcac---aaaagtcattctcataactttgccatagaattttcctt 33378969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 52041033 - 52041092
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgactt 60  Q
    ||||||||||||||||||  |||||| |  ||||||||||||||||||||||||||||||    
T  52041033 actcactacacttttgatgttatagtattaacttcaccagaaaagtcattctcatgactt 52041092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 40936050 - 40935993
Alignment:
Q  8 acacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaa 65  Q
    ||||||||||| |||||||||  |||||||||||||| ||||||||||||||| ||||    
T  40936050 acacttttgatgctatagtgttaacttcaccagaaaaatcattctcatgacttcacaa 40935993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 40640637 - 40640684
Alignment:
Q  31 acttcaccagaaaagtcattctcatgacttgacaatggaattttcctt 78  Q
    |||||||||||||||||||||||||||||| || || |||||||||||    
T  40640637 acttcaccagaaaagtcattctcatgacttcaccatagaattttcctt 40640684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 35844372 - 35844315
Alignment:
Q  21 tatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctt 78  Q
    ||||||||  |||||||||||||||||||| ||||||||| || || |||||||||||    
T  35844372 tatagtgttaacttcaccagaaaagtcattatcatgacttcaccatagaattttcctt 35844315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 43975998 - 43976054
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgactt 60  Q
    |||||||||||||||||| ||||||||| |||||   || ||||||||||||||||||||    
T  43975998 actcactacacttttgatgctatagtgttgactt---caaaaaagtcattctcatgactt 43976054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 46297872 - 46297945
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaatttt 74  Q
    |||||||| | |||||||  ||||||||  |||||||||||||||||||| ||||||||| || || |||||||    
T  46297872 actcactatatttttgatgttatagtgttaacttcaccagaaaagtcattttcatgacttcaccatagaatttt 46297945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 48355007 - 48354930
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctt 78  Q
    ||||| |||| |||| ||| ||||||||  ||||||||| |||| ||||||||||||||| || || |||||||||||    
T  48355007 actcattacatttttaatattatagtgttaacttcaccataaaaatcattctcatgacttcaccatagaattttcctt 48354930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 40552369 - 40552445
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcct 77  Q
    ||||| |||| |||||||  ||||||||  ||||| ||| |||||||||||||||||||| || || ||||||||||    
T  40552369 actcattacatttttgatgttatagtgttaacttctccaaaaaagtcattctcatgacttcaccatagaattttcct 40552445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 53229264 - 53229322
Alignment:
Q  2 ctcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgactt 60  Q
    ||||||||||||||||| |||||||||  | |||||||||||| | ||| |||||||||    
T  53229264 ctcactacacttttgatgctatagtgttaatttcaccagaaaaataattttcatgactt 53229322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 55343405 - 55343471
Alignment:
Q  12 ttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctt 78  Q
    |||||||| ||||||||  |||||| ||||||||||||| || |||||| || || |||||||||||    
T  55343405 ttttgatattatagtgttaacttcatcagaaaagtcattttcgtgacttcaccatagaattttcctt 55343471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 25579803 - 25579746
Alignment:
Q  3 tcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgactt 60  Q
    |||| ||||||||||| ||||||| |  |||||||||||||| |||||||||| ||||    
T  25579803 tcacaacacttttgatgctatagtattaacttcaccagaaaaatcattctcataactt 25579746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 34133001 - 34132924
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctt 78  Q
    |||||| ||| |||||||||||||||||  | ||||||| |||||||||| || |||||| |  || |||||||||||    
T  34133001 actcacaacatttttgatactatagtgttaatttcaccaaaaaagtcattttcgtgacttcattatagaattttcctt 34132924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 51213121 - 51213166
Alignment:
Q  31 acttcaccagaaaagtcattctcatgacttgacaatggaattttcc 76  Q
    ||||||||| |||||||||||||||||||| || || |||||||||    
T  51213121 acttcaccaaaaaagtcattctcatgacttcaccatagaattttcc 51213166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 44186611 - 44186663
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctc 53  Q
    |||||| ||||||||||| |||||||||  ||||||||| |||| ||||||||    
T  44186611 actcacaacacttttgatgctatagtgttaacttcaccaaaaaaatcattctc 44186663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 20768161 - 20768087
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttc 75  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| || || ||||||||    
T  20768161 actcactacacttttgatgctatagtgttgacttcaccagaaaagtcattctcatgacttcaccatagaattttc 20768087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 8513308 - 8513232
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcct 77  Q
    |||||| |||||||||||| ||||||||  |||||||||||||||||||||||||||||| || || ||||||||||    
T  8513308 actcacaacacttttgatattatagtgttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcct 8513232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 7235143 - 7235225
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttccttaatta 83  Q
    ||||||||||||||||||  |||||||| ||||||||| |||||||||||||||| |||| || || ||||||||| ||||||    
T  7235143 actcactacacttttgatgttatagtgttgacttcaccggaaaagtcattctcataacttcaccatagaattttccataatta 7235225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 6088983 - 6088910
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaatttt 74  Q
    |||||| |||||||||||||||||||||  |||||||||||||| ||||||||||||||| || || |||||||    
T  6088983 actcacaacacttttgatactatagtgttaacttcaccagaaaaatcattctcatgacttcaccatagaatttt 6088910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 3880048 - 3880124
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcct 77  Q
    |||||| ||||||||||||||||| |||  ||||||||||||||||||||||| |||||| || || ||||||||||    
T  3880048 actcacaacacttttgatactataatgttaacttcaccagaaaagtcattctcgtgacttcaccatagaattttcct 3880124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 18498507 - 18498431
Alignment:
Q  2 ctcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctt 78  Q
    ||||||||||||||||| ||||| |||  |||||||||| ||||||||||||||||||| || || || ||||||||    
T  18498507 ctcactacacttttgatgctataatgttaacttcaccaggaaagtcattctcatgacttcactatagatttttcctt 18498431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 4318939 - 4319009
Alignment:
Q  8 acacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctt 78  Q
    |||||||||||  ||||||||  ||||||||| |||||||||||||||||||| || || |||||||||||    
T  4318939 acacttttgatgttatagtgttaacttcaccaaaaaagtcattctcatgacttcaccatagaattttcctt 4319009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 33618909 - 33618850
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgactt 60  Q
    |||||||||||||||||| | ||||||| |||||||||||||||||  ||| ||||||||    
T  33618909 actcactacacttttgatgcgatagtgttgacttcaccagaaaagtatttcccatgactt 33618850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 30353474 - 30353540
Alignment:
Q  8 acacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaatttt 74  Q
    |||||||||||  |||| |||  |||||||||||||||||||||||||||||| || || |||||||    
T  30353474 acacttttgatgttataatgttaacttcaccagaaaagtcattctcatgacttcaccatagaatttt 30353540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 19631794 - 19631747
Alignment:
Q  31 acttcaccagaaaagtcattctcatgacttgacaatggaattttcctt 78  Q
    |||||||||||||||||||||| ||||||| || || |||||||||||    
T  19631794 acttcaccagaaaagtcattcttatgacttcaccatagaattttcctt 19631747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 442 - 538
Target Start/End: Complemental strand, 26973235 - 26973139
Alignment:
Q  442 ttcacaagtaccttccaaagggtgtgtcttactatgatatgttgagaaaaagcaagttctgtctttgtcctagtgggtacgaggttgcaagtccaag 538  Q
    |||| ||||| |||||||||||||| ||||||||||| ||| ||||||| |||||||||||||| ||||||||||| || ||||| || ||||||||    
T  26973235 ttcaaaagtatcttccaaagggtgtttcttactatgaaatgctgagaaagagcaagttctgtctctgtcctagtggttatgaggtggctagtccaag 26973139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 16415716 - 16415639
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctt 78  Q
    |||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||| ||  | |||||||||||    
T  16415716 actcactacacttttgatgctatagtgttaacttcaccagaaaagtcattctcatgacttcaccttagaattttcctt 16415639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 14758112 - 14758053
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgactt 60  Q
    ||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||    
T  14758112 actcactacacttttgatgttatagtgttgacttcaccagaaaagtcattctcatgactt 14758053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 15168160 - 15168083
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctt 78  Q
    |||||||||||||||||| ||||||||| |||||||||||||||  ||||||||| |||| || || |||||||||||    
T  15168160 actcactacacttttgatgctatagtgttgacttcaccagaaaaagcattctcatcacttcacgatagaattttcctt 15168083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 3309219 - 3309144
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcc 76  Q
    |||||| |||||||||||  ||||||||  |||| ||||||||||||||||||||||||| || || |||||||||    
T  3309219 actcacaacacttttgatgttatagtgttaactttaccagaaaagtcattctcatgactttaccatagaattttcc 3309144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 11742462 - 11742532
Alignment:
Q  8 acacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctt 78  Q
    |||||||||||| ||||||||  ||||||||||||||||||||||||| |||| || ||  ||||||||||    
T  11742462 acacttttgataatatagtgttaacttcaccagaaaagtcattctcataacttcacgataaaattttcctt 11742532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 1547338 - 1547281
Alignment:
Q  21 tatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctt 78  Q
    ||||||||  |||||||||||||||||||||||||||||| || || |||||||||||    
T  1547338 tatagtgttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcctt 1547281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 38823274 - 38823210
Alignment:
Q  12 ttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcc 76  Q
    ||||||| |||||||||  |||| ||||||||||||||||||||||||| || || |||||||||    
T  38823274 ttttgatgctatagtgttaacttaaccagaaaagtcattctcatgacttcaccatagaattttcc 38823210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 7079179 - 7079238
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgactt 60  Q
    |||||| |||||||||||| ||||||||  ||||||||| |||||||||| |||||||||    
T  7079179 actcacaacacttttgatattatagtgttaacttcaccaaaaaagtcattatcatgactt 7079238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 21289716 - 21289661
Alignment:
Q  21 tatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcc 76  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||| || ||||||    
T  21289716 tatagtgttaacttcaccagaaaagtcattctcatgacttcacaatagatttttcc 21289661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 31621658 - 31621717
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgactt 60  Q
    ||||| ||||| ||||||  |||||||| |||||||| ||||||||||||||||||||||    
T  31621658 actcaatacacctttgatgttatagtgttgacttcactagaaaagtcattctcatgactt 31621717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 27533094 - 27533144
Alignment:
Q  10 acttttgatactatagtgtcgacttcaccagaaaagtcattctcatgactt 60  Q
    ||||||||| |||||||||  ||||||||||||||||||||||||| ||||    
T  27533094 acttttgatgctatagtgttaacttcaccagaaaagtcattctcataactt 27533144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 33725705 - 33725778
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaatttt 74  Q
    ||||| ||||||||||||  ||||| || |||||||| ||||||||||||||| |||||| || || |||||||    
T  33725705 actcaatacacttttgatgatatagcgttgacttcactagaaaagtcattctcttgactttaccatagaatttt 33725778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 39393454 - 39393377
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctt 78  Q
    |||||| ||||||||||| |||||||||  ||||||  ||||||||||||||||| |||| ||  | |||||||||||    
T  39393454 actcacaacacttttgatgctatagtgttaacttcattagaaaagtcattctcataacttcaccgtagaattttcctt 39393377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 2959815 - 2959743
Alignment:
Q  5 actacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcct 77  Q
    |||||| |||||||  ||||||||  |||||| ||||||||||||| ||||||||| || || ||||||||||    
T  2959815 actacagttttgatgttatagtgttaacttcatcagaaaagtcattttcatgacttcaccatagaattttcct 2959743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 4150489 - 4150537
Alignment:
Q  30 gacttcaccagaaaagtcattctcatgacttgacaatggaattttcctt 78  Q
    ||||||||||||||||||||| ||||||||| || || |||||||||||    
T  4150489 gacttcaccagaaaagtcattatcatgacttcaccatagaattttcctt 4150537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 4330351 - 4330291
Alignment:
Q  1 actcactacacttttgatactatagtgtcga-cttcaccagaaaagtcattctcatgactt 60  Q
    |||||||||||||||||| |||||||||  | ||||| |||||||||||||||||| ||||    
T  4330351 actcactacacttttgatgctatagtgtttatcttcatcagaaaagtcattctcataactt 4330291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 47279260 - 47279201
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgactt 60  Q
    |||||| |||||||||||| |||| |||  ||||||||| |||| |||||||||||||||    
T  47279260 actcacaacacttttgatagtataatgttaacttcaccaaaaaaatcattctcatgactt 47279201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 3535003 - 3534926
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctt 78  Q
    |||||| |||||||||||  ||||||||  ||||||| |||||| | ||||| ||||||| | ||| |||||||||||    
T  3535003 actcacaacacttttgatgttatagtgttaacttcactagaaaattaattctaatgacttcataatagaattttcctt 3534926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 15752080 - 15752027
Alignment:
Q  21 tatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaatttt 74  Q
    ||||||||  ||||||||| |||||||||||||||||||| || || |||||||    
T  15752080 tatagtgttaacttcaccaaaaaagtcattctcatgacttcaccatagaatttt 15752027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 43579287 - 43579242
Alignment:
Q  31 acttcaccagaaaagtcattctcatgacttgacaatggaattttcc 76  Q
    ||||||| |||||||||||||||||||||| || || |||||||||    
T  43579287 acttcactagaaaagtcattctcatgacttcaccatagaattttcc 43579242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 28003126 - 28003197
Alignment:
Q  5 actacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcc 76  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| || || |||||||||    
T  28003126 actacacttttgatgctatagtgttgacttcaccagaaaagtcattctcatgacttcaccatagaattttcc 28003197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 38011927 - 38011852
Alignment:
Q  3 tcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctt 78  Q
    ||||||||||||||||  |||||||| |||||||||||||||||||||||||||| || || || |||||||||||    
T  38011927 tcactacacttttgatgttatagtgttgacttcaccagaaaagtcattctcatgatttcaccatagaattttcctt 38011852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 35025724 - 35025800
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcct 77  Q
    |||||||||||||||||| ||||||||| ||||||||||||||| ||||| ||||||||| |  || ||||||||||    
T  35025724 actcactacacttttgatgctatagtgttgacttcaccagaaaaatcattttcatgacttcagcatagaattttcct 35025800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 33816669 - 33816728
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgactt 60  Q
    |||||||||||||||||| ||| | ||| ||||||||||||||| |||||||||||||||    
T  33816669 actcactacacttttgatgctacaatgttgacttcaccagaaaaatcattctcatgactt 33816728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 35021171 - 35021248
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctt 78  Q
    |||||||||| |||||||  |||| |||  |||||||||||||||||||| ||||||||| || || |||||||||||    
T  35021171 actcactacatttttgatgttataatgttaacttcaccagaaaagtcattttcatgacttcaccatagaattttcctt 35021248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 38812263 - 38812312
Alignment:
Q  31 acttcaccagaaaagtcattctcatgacttgacaatggaattttccttaa 80  Q
    |||||||||||||||||||||||||||||| || || |||||||||||||    
T  38812263 acttcaccagaaaagtcattctcatgacttcaccatagaattttccttaa 38812312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 47253824 - 47253751
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaatttt 74  Q
    |||||| |||||||||||  ||||||||  ||||||||| |||||||||||||||||||| || || |||||||    
T  47253824 actcacaacacttttgatgatatagtgttaacttcaccaaaaaagtcattctcatgacttcaccatagaatttt 47253751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 7703585 - 7703533
Alignment:
Q  8 acacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgactt 60  Q
    |||||||||||  ||||||||  ||||||||||||||||||||||||||||||    
T  7703585 acacttttgatgttatagtgttaacttcaccagaaaagtcattctcatgactt 7703533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 5048101 - 5048160
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgactt 60  Q
    ||||||||||||||||||  ||||| || ||||||||||||||| |||||||||| ||||    
T  5048101 actcactacacttttgatgttatagagttgacttcaccagaaaaatcattctcataactt 5048160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 27396684 - 27396613
Alignment:
Q  8 acacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctta 79  Q
    |||||||| || ||||| |||  |||||||||||||||||||||||||||||| || || ||||||| ||||    
T  27396684 acacttttaatgctataatgttaacttcaccagaaaagtcattctcatgacttcaccatagaatttttctta 27396613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 34948233 - 34948292
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgactt 60  Q
    |||||| |||||||||||  ||||||||  ||||| ||||||||||||||||||||||||    
T  34948233 actcacaacacttttgatgttatagtgttaacttcgccagaaaagtcattctcatgactt 34948292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 29584341 - 29584411
Alignment:
Q  8 acacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctt 78  Q
    |||||||||||  ||||||||  ||||||||||||||||||||| || ||||| || || |||||||||||    
T  29584341 acacttttgatgttatagtgttaacttcaccagaaaagtcattcccacgacttcaccatagaattttcctt 29584411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 54499375 - 54499425
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattc 51  Q
    |||||| ||||||||||| |||||||||  |||||||||||||||||||||    
T  54499375 actcacaacacttttgatgctatagtgttaacttcaccagaaaagtcattc 54499425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 17272077 - 17272008
Alignment:
Q  10 acttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctta 79  Q
    |||||||||  ||||||||  ||||||||||||||||||||| || ||||| || || ||||||||||||    
T  17272077 acttttgatgttatagtgttaacttcaccagaaaagtcattcccacgacttcaccatagaattttcctta 17272008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 32579519 - 32579466
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctca 54  Q
    ||||||| ||||||||||  |||| ||| |||||||||||||||||||||||||    
T  32579519 actcactgcacttttgatgttataatgttgacttcaccagaaaagtcattctca 32579466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 32912716 - 32912793
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctt 78  Q
    ||||| |||| |||||||  ||||||||  ||||||||| |||||||||||| ||||||| || || |||||||||||    
T  32912716 actcattacatttttgatgttatagtgttaacttcaccaaaaaagtcattcttatgacttcaccatagaattttcctt 32912793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 25184188 - 25184112
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcct 77  Q
    ||||| |||| |||||||  ||||||||  ||||||||| || ||||||||||||||||| || || ||||||||||    
T  25184188 actcattacatttttgatgttatagtgttaacttcaccaaaatagtcattctcatgacttcaccatagaattttcct 25184112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 49376042 - 49375982
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccag-aaaagtcattctcatgactt 60  Q
    |||||| ||||||||||| ||||| |||  |||||||||| ||||||||||||||||||||    
T  49376042 actcacgacacttttgatgctataatgttaacttcaccagaaaaagtcattctcatgactt 49375982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 55241251 - 55241315
Alignment:
Q  12 ttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcc 76  Q
    |||||||| |||||| |  ||||||| |||||||||||||||||||||| || || |||||||||    
T  55241251 ttttgataatatagtattaacttcactagaaaagtcattctcatgacttcaccatagaattttcc 55241315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 55478037 - 55478109
Alignment:
Q  7 tacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctta 79  Q
    |||| |||||||  ||||||||  ||||||||| |||| ||||||||||||||| || || ||||||||||||    
T  55478037 tacatttttgatgttatagtgttaacttcaccaaaaaaatcattctcatgacttcaccatagaattttcctta 55478109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 20097494 - 20097537
Alignment:
Q  31 acttcaccagaaaagtcattctcatgacttgacaatggaatttt 74  Q
    |||||||||||||||||||||||||||||| || || |||||||    
T  20097494 acttcaccagaaaagtcattctcatgacttcaccatagaatttt 20097537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 39397993 - 39397918
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcc 76  Q
    |||||| |||||||| ||  ||||||||  ||||||||| |||||||||||| ||||||| || || |||||||||    
T  39397993 actcacaacacttttaatgttatagtgttaacttcaccataaaagtcattctaatgacttcaccatagaattttcc 39397918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 4205180 - 4205114
Alignment:
Q  12 ttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctt 78  Q
    |||||||| ||||||||  |||||| ||||||||||||| || |||||| || || |||||||||||    
T  4205180 ttttgatattatagtgttaacttcatcagaaaagtcattttcctgacttcaccatagaattttcctt 4205114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 2704557 - 2704508
Alignment:
Q  31 acttcaccagaaaagtcattctcatgacttgacaatggaattttccttaa 80  Q
    |||||||||||||||||||| ||||||||| || ||  ||||||||||||    
T  2704557 acttcaccagaaaagtcattttcatgacttcaccataaaattttccttaa 2704508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 7152242 - 7152319
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctt 78  Q
    |||||||| |||||||||  |||| |||  |||| |||||||||||||||  |||||||| || || |||||||||||    
T  7152242 actcactatacttttgatgttataatgttaactttaccagaaaagtcattagcatgacttcaccatagaattttcctt 7152319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 25701193 - 25701270
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctt 78  Q
    ||||||||||||||||||  |||| |||  |||| |||| |||||||||| ||||||||| || ||  ||||||||||    
T  25701193 actcactacacttttgatgttataatgttaactttaccaaaaaagtcattatcatgacttcaccataaaattttcctt 25701270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 30002760 - 30002837
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctt 78  Q
    |||||| ||||||||||| ||| |||||  |||||||||||||| ||||| | ||||||| || || || ||||||||    
T  30002760 actcacaacacttttgatgctacagtgttaacttcaccagaaaaatcattttaatgacttcaccatagagttttcctt 30002837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 34361647 - 34361704
Alignment:
Q  21 tatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctt 78  Q
    ||||||||  ||||||||| |||||||||||| ||||||| || || |||||||||||    
T  34361647 tatagtgttaacttcaccaaaaaagtcattcttatgacttcaccatagaattttcctt 34361704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 38811858 - 38811813
Alignment:
Q  31 acttcaccagaaaagtcattctcatgacttgacaatggaattttcc 76  Q
    |||||||||||||| ||||||||||||||| || || |||||||||    
T  38811858 acttcaccagaaaaatcattctcatgacttcaccatagaattttcc 38811813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 8741987 - 8742064
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctt 78  Q
    |||||| ||||||||||| |||||||||  |||||||||||||||||||||||||||||| || || |||||||||||    
T  8741987 actcacaacacttttgatgctatagtgttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcctt 8742064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 14409426 - 14409501
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcc 76  Q
    |||||||||| |||||||  |||||||| ||||||||||||||| ||||||||||||||| || || |||||||||    
T  14409426 actcactacatttttgatgttatagtgttgacttcaccagaaaaatcattctcatgacttcaccatagaattttcc 14409501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 19119927 - 19119857
Alignment:
Q  8 acacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctt 78  Q
    ||||||||||| |||||||||  ||||||||| |||||||||||||||||||| || || |||||||||||    
T  19119927 acacttttgatgctatagtgttaacttcaccacaaaagtcattctcatgacttcaccatagaattttcctt 19119857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 25501028 - 25501099
Alignment:
Q  3 tcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaatttt 74  Q
    |||| ||||||||||| |||||||||  |||| ||||||||||||||||||||||||| || || |||||||    
T  25501028 tcacaacacttttgatgctatagtgttaactttaccagaaaagtcattctcatgacttcaccatagaatttt 25501099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 27330374 - 27330299
Alignment:
Q  8 acacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttccttaatta 83  Q
    |||||||||||  ||||||||  ||||||||||||||||||||| || ||||| || || ||||||||||||||||    
T  27330374 acacttttgatgttatagtgttaacttcaccagaaaagtcattcccacgacttcaccatagaattttccttaatta 27330299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 33908308 - 33908249
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgactt 60  Q
    ||||||||||||||||||  |||||||| ||||||||||||||  |||||||||||||||    
T  33908308 actcactacacttttgatgatatagtgttgacttcaccagaaagttcattctcatgactt 33908249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 5837630 - 5837574
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatga 57  Q
    |||||| ||||||||||| |||||||||   ||||||||||||||||||||||||||    
T  5837630 actcacaacacttttgatgctatagtgttaccttcaccagaaaagtcattctcatga 5837574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 22980857 - 22980809
Alignment:
Q  12 ttttgatactatagtgtcgacttcaccagaaaagtcattctcatgactt 60  Q
    |||||||||||||||||  ||||||||||||||||||||||||| ||||    
T  22980857 ttttgatactatagtgttaacttcaccagaaaagtcattctcataactt 22980809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 26268142 - 26268090
Alignment:
Q  8 acacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgactt 60  Q
    ||||||||||| |||||||||  |||||||||||||| |||||||||||||||    
T  26268142 acacttttgatgctatagtgttaacttcaccagaaaaatcattctcatgactt 26268090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 7693305 - 7693230
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcc 76  Q
    |||||| |||||||||||  ||||||||  |||||||||||||||||||| | ||||||| || || |||||||||    
T  7693305 actcacaacacttttgatgttatagtgttaacttcaccagaaaagtcattttaatgacttcaccatagaattttcc 7693230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 8466818 - 8466739
Alignment:
Q  3 tcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttccttaatt 82  Q
    |||| |||||||||||  || |||||  |||||||||||||||||||||||||||| | |  || |||||||||||||||    
T  8466818 tcacaacacttttgatgttacagtgttaacttcaccagaaaagtcattctcatgacctcatcatagaattttccttaatt 8466739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 13956445 - 13956527
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttccttaatta 83  Q
    |||||||||| |||||||  ||||||||  ||||||  |||||||||||| ||||||||| ||  | ||||||||||||||||    
T  13956445 actcactacagttttgatgttatagtgttaacttcatgagaaaagtcattttcatgacttcaccgtagaattttccttaatta 13956527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 36860498 - 36860420
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctta 79  Q
    |||||| ||| |||| ||||||||||||  |||||||||||||| ||||| || |||||| || || ||||||||||||    
T  36860498 actcacaacattttttatactatagtgttaacttcaccagaaaaatcattttcgtgacttcaccatagaattttcctta 36860420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 16004476 - 16004552
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtc-attctcatgacttgacaatggaattttcc 76  Q
    |||||| ||| |||||||  ||||||||  ||||||||||||||||| ||||||||||||| || || |||||||||    
T  16004476 actcacaacatttttgatgttatagtgttaacttcaccagaaaagtcaattctcatgactttaccatagaattttcc 16004552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 35933977 - 35933901
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcct 77  Q
    |||||| ||||||||||| |||||||||  |||||| || |||| ||||||||||||||| || ||  |||||||||    
T  35933977 actcacaacacttttgattctatagtgttaacttcatcaaaaaaatcattctcatgacttcaccatacaattttcct 35933901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 15724565 - 15724490
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcc 76  Q
    |||||| | |||||||||  ||||||||  ||||||||| ||||||||||||||| |||| || || |||||||||    
T  15724565 actcacaaaacttttgatgttatagtgttaacttcaccaaaaaagtcattctcataacttcaccatagaattttcc 15724490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 22019707 - 22019656
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattct 52  Q
    |||||| ||||||||||| ||||||| |  ||||||||||||||||||||||    
T  22019707 actcacaacacttttgattctatagttttaacttcaccagaaaagtcattct 22019656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 22616539 - 22616492
Alignment:
Q  31 acttcaccagaaaagtcattctcatgacttgacaatggaattttcctt 78  Q
    |||||||||||||||||||| ||||||||| || || |||||||||||    
T  22616539 acttcaccagaaaagtcattttcatgacttcaccatagaattttcctt 22616492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 30969424 - 30969483
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgactt 60  Q
    |||||| |||||||||||  ||||||||  ||||||||||| || |||||||||||||||    
T  30969424 actcacaacacttttgatgttatagtgttaacttcaccagataaatcattctcatgactt 30969483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 40133460 - 40133385
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcc 76  Q
    |||||| ||| ||||||||||||| |||  ||||||||| |||||||||| || |||||| || || |||||||||    
T  40133460 actcacaacatttttgatactataatgttaacttcaccacaaaagtcattttcgtgacttcaccatagaattttcc 40133385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 31786747 - 31786821
Alignment:
Q  2 ctcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcc 76  Q
    ||||||||| |||| || |||||||||  ||||||||| ||||||||||||||  |||| || || |||||||||    
T  31786747 ctcactacatttttcatgctatagtgttaacttcaccaaaaaagtcattctcactacttcactatagaattttcc 31786821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 8437041 - 8436965
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcct 77  Q
    |||||||||||||| ||  |||||||||  | ||||||| |||| ||||||||||||||| ||| | ||||| ||||    
T  8437041 actcactacactttggaagctatagtgttaatttcaccaaaaaaatcattctcatgacttcacattagaattgtcct 8436965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 9200308 - 9200232
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcct 77  Q
    |||||| |||||||||||  ||||||||  |||||||||||||||| ||| | ||||||| || ||  |||||||||    
T  9200308 actcacaacacttttgatgttatagtgttaacttcaccagaaaagttattttaatgacttcaccataaaattttcct 9200232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 10237459 - 10237415
Alignment:
Q  31 acttcaccagaaaagtcattctcatgacttgacaatggaattttc 75  Q
    ||||||| |||||||||||| ||||||||| ||||| ||||||||    
T  10237459 acttcactagaaaagtcattttcatgacttcacaatagaattttc 10237415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 36866826 - 36866762
Alignment:
Q  12 ttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcc 76  Q
    |||||||| ||||||||  |||||||||||||| ||||| || |||||| || || |||||||||    
T  36866826 ttttgatattatagtgttaacttcaccagaaaaatcattttcgtgacttcaccatagaattttcc 36866762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 39572894 - 39572818
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcct 77  Q
    |||||| ||| |||| ||| |||||| |  |||| || |||||||||||||||||||||| || || ||||||||||    
T  39572894 actcacaacattttttatattatagtattaacttaactagaaaagtcattctcatgacttcaccatagaattttcct 39572818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 33906298 - 33906223
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcc 76  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||||||||| | || || || |||||||||    
T  33906298 actcactacacttttaatactatagtgttgacttcaccagaaaagtcattctcataatttcaccatagaattttcc 33906223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 27082954 - 27083030
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcct 77  Q
    |||||||||||||||||| |||||||||  |||||||||||||||||| ||| ||||||| || || ||||||||||    
T  27082954 actcactacacttttgatgctatagtgttaacttcaccagaaaagtcagtctgatgacttcaccatagaattttcct 27083030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 13307697 - 13307622
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcc 76  Q
    |||||| |||||||||||  ||||||||  |||||||||||||| ||||||||||||||| || || |||||||||    
T  13307697 actcacaacacttttgatgttatagtgttaacttcaccagaaaaatcattctcatgacttcaccatagaattttcc 13307622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 36695082 - 36695163
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttccttaatt 82  Q
    |||||| ||| |||||||| ||||||||  |||||| ||||||||||||| || |||||| || || |||||||||||||||    
T  36695082 actcacaacatttttgatattatagtgttaacttcatcagaaaagtcattttcctgacttcaccatagaattttccttaatt 36695163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 1205001 - 1204942
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgactt 60  Q
    |||||||||| |||| ||  ||||||||  ||||||||||||||||||||||||||||||    
T  1205001 actcactacattttttatgttatagtgttaacttcaccagaaaagtcattctcatgactt 1204942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 24823395 - 24823466
Alignment:
Q  8 acacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctta 79  Q
    |||||||||||| ||||||||  ||||||||| ||||||||||||||| |||| || || | ||||||||||    
T  24823395 acacttttgatattatagtgttaacttcaccaaaaaagtcattctcataactttaccatagtattttcctta 24823466  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 34895041 - 34894964
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctt 78  Q
    |||||||||| | |||||  ||||||||  |||||| ||||||||||||| ||||||||| || || |||||||||||    
T  34895041 actcactacagtgttgatgttatagtgttaacttcatcagaaaagtcattttcatgacttcaccatagaattttcctt 34894964  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 38644052 - 38643975
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctt 78  Q
    |||||| |||||||||||  ||||||||  |||| |||| ||||||||||||||||| || || || |||||||||||    
T  38644052 actcacaacacttttgatgttatagtgttaacttgaccaaaaaagtcattctcatgatttcaccatagaattttcctt 38643975  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 43643711 - 43643788
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctt 78  Q
    ||||| |||| |||||||  ||||||||  ||||||||| || ||||||||||||||||| || || |||||||||||    
T  43643711 actcattacatttttgatgttatagtgttaacttcaccaaaatagtcattctcatgacttcaccatagaattttcctt 43643788  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 5300069 - 5300137
Alignment:
Q  8 acacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcc 76  Q
    ||||||||||| |||||||||  ||||||  | |||||||||||||||||||| || || |||||||||    
T  5300069 acacttttgatgctatagtgttaacttcattaaaaaagtcattctcatgacttcaccatagaattttcc 5300137  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 16446991 - 16447067
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcct 77  Q
    |||||||||| |||||||  ||||||||  |||| | ||||||||||||| ||||||||| || || ||||||||||    
T  16446991 actcactacaattttgatgttatagtgttaactttatcagaaaagtcattttcatgacttcaccatagaattttcct 16447067  T

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Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 34952147 - 34952223
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcct 77  Q
    |||||| |||||||||||  ||||||||  |||| ||||||||||||||| | ||||||| || || ||||||||||    
T  34952147 actcacaacacttttgatgatatagtgttaacttgaccagaaaagtcattttaatgactttactatagaattttcct 34952223  T

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Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 37970635 - 37970694
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgactt 60  Q
    ||||| |||| |||||||  ||||||||  ||||||||| ||||||||||||||||||||    
T  37970635 actcattacatttttgatgttatagtgttaacttcaccaaaaaagtcattctcatgactt 37970694  T

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Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 1150221 - 1150306
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttccttaattattaa 87  Q
    ||||| |||| |||||||  ||||| ||  ||||||||| |||||||||||| ||||||| || || ||||||||| ||||||||||    
T  1150221 actcattacatttttgatgttatagcgttaacttcaccaaaaaagtcattcttatgacttcaccatagaattttcc-taattattaa 1150306  T

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Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 40862482 - 40862416
Alignment:
Q  12 ttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctt 78  Q
    |||||||| ||||||||  |||||||||||||||| ||| || |||||| || || |||||||||||    
T  40862482 ttttgatattatagtgttaacttcaccagaaaagttattttcgtgacttcactatagaattttcctt 40862416  T

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Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 7998402 - 7998361
Alignment:
Q  36 accagaaaagtcattctcatgacttgacaatggaattttcct 77  Q
    ||||||||||||||||||||||||| || || ||||||||||    
T  7998402 accagaaaagtcattctcatgacttcaccatagaattttcct 7998361  T

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Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 9864222 - 9864145
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctt 78  Q
    |||||| ||| |||||||||||||||||  | ||||||| |||||||||| || |||||| |  || |||||||||||    
T  9864222 actcacaacatttttgatactatagtgttaatttcaccaaaaaagtcattttcgtgacttcattatagaattttcctt 9864145  T

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Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 6446708 - 6446752
Alignment:
Q  30 gacttcaccagaaaagtcattctcatgacttgacaatggaatttt 74  Q
    ||||||||||||||||||||| ||||||||| || || |||||||    
T  6446708 gacttcaccagaaaagtcattatcatgacttcaccatagaatttt 6446752  T

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Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 15009305 - 15009241
Alignment:
Q  12 ttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcc 76  Q
    |||||||  ||||||||  ||||||||| |||||||||||| ||||||| || || |||||||||    
T  15009305 ttttgatgttatagtgttaacttcaccaaaaaagtcattcttatgacttcaccatagaattttcc 15009241  T

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Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 39099262 - 39099302
Alignment:
Q  38 cagaaaagtcattctcatgacttgacaatggaattttcctt 78  Q
    ||||||||||||||||||||||| || || |||||||||||    
T  39099262 cagaaaagtcattctcatgacttcaccatagaattttcctt 39099302  T

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Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 41465584 - 41465509
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcc 76  Q
    ||||||||||| |||||| |||||||||  |||||||||||||||||||||||||||||| || || |||||||||    
T  41465584 actcactacacctttgatgctatagtgttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcc 41465509  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 18494396 - 18494473
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctt 78  Q
    |||||| ||||||||||| |||||||||  |||||||||||||||||||| ||||||||| || |  |||||||||||    
T  18494396 actcacaacacttttgatgctatagtgttaacttcaccagaaaagtcattttcatgacttcaccacagaattttcctt 18494473  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 19313927 - 19313852
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcc 76  Q
    |||||| ||||||||||| ||||| |||  |||||||||||||||||||||| ||||||| || || |||||||||    
T  19313927 actcacaacacttttgatgctataatgttaacttcaccagaaaagtcattctaatgacttcaccatagaattttcc 19313852  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 13711539 - 13711465
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttc 75  Q
    |||||| ||||||||||| ||||| |||  |||||||||||||||||||||| ||||||| || || ||||||||    
T  13711539 actcacaacacttttgatgctataatgttaacttcaccagaaaagtcattctgatgacttcaccatagaattttc 13711465  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 36642054 - 36641980
Alignment:
Q  8 acacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttccttaatt 82  Q
    ||||||||||| ||||||| |  | |||||||||||||||||||||||||||| || || ||||||| |||||||    
T  36642054 acacttttgatgctatagtattaatttcaccagaaaagtcattctcatgacttcaccatagaatttttcttaatt 36641980  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 4264205 - 4264281
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcct 77  Q
    |||||| ||||||||||| |||||||||  |||| ||||||||||||||| | ||||||| || || ||||||||||    
T  4264205 actcacaacacttttgatgctatagtgttaactttaccagaaaagtcattatgatgacttcaccatagaattttcct 4264281  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 19424756 - 19424832
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcct 77  Q
    |||||| |||||||||||  ||||||||  ||||||||||||||| |||||||||||||| || ||  |||||||||    
T  19424756 actcacaacacttttgatgttatagtgttaacttcaccagaaaagccattctcatgacttcaccataaaattttcct 19424832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 4166986 - 4166919
Alignment:
Q  12 ttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcctta 79  Q
    ||||||||||||| |||  |||||||||||||||||||| || |||||| || || ||||||||||||    
T  4166986 ttttgatactataatgttaacttcaccagaaaagtcattttcgtgacttcaccatagaattttcctta 4166919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 33551114 - 33551195
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttccttaatt 82  Q
    |||||||||| |||||||  ||||||||  ||||||| | |||||||||||||||||||| ||  | ||||||||| |||||    
T  33551114 actcactacatttttgatgttatagtgttaacttcactaaaaaagtcattctcatgacttcaccgtagaattttccataatt 33551195  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 26357652 - 26357593
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgactt 60  Q
    |||||||||| |||||||  ||||||||  |||||| ||||||||||||| |||||||||    
T  26357652 actcactacagttttgatgttatagtgttaacttcatcagaaaagtcattttcatgactt 26357593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 60
Target Start/End: Complemental strand, 6177820 - 6177791
Alignment:
Q  31 acttcaccagaaaagtcattctcatgactt 60  Q
    ||||||||||||||||||||||||||||||    
T  6177820 acttcaccagaaaagtcattctcatgactt 6177791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 17054228 - 17054300
Alignment:
Q  5 actacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcct 77  Q
    |||||| |||||||  |||||| |  ||||||||| ||||||||||| |||||||| || || ||||||||||    
T  17054228 actacatttttgatgttatagtattaacttcaccaaaaaagtcattcgcatgacttcaccatagaattttcct 17054300  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 17071885 - 17071941
Alignment:
Q  21 tatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcct 77  Q
    ||||||||  ||||||||| ||||||||||| |||||||| || || ||||||||||    
T  17071885 tatagtgttaacttcaccaaaaaagtcattcgcatgacttcaccatagaattttcct 17071941  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 44286017 - 44285965
Alignment:
Q  8 acacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgactt 60  Q
    ||||||||||| |||||||||  |||||| ||||||| |||||| ||||||||    
T  44286017 acacttttgatgctatagtgttaacttcatcagaaaaatcattcgcatgactt 44285965  T

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Target: scaffold0009 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 42423 - 42347
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcct 77  Q
    |||||| |||||||||||  ||||||||  |||||||||||||| | ||||||||||||| || ||  |||||||||    
T  42423 actcacaacacttttgatgttatagtgttaacttcaccagaaaaattattctcatgacttcaccataaaattttcct 42347  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 209 - 133
Alignment:
Q  1 actcactacacttttgatactatagtgtcgacttcaccagaaaagtcattctcatgacttgacaatggaattttcct 77  Q
    |||||| ||| |||| |||||| |||||  |||||||||||||||||||| || |||||| || || ||||||||||    
T  209 actcacaacattttttatactacagtgttaacttcaccagaaaagtcattttcgtgacttcaccatagaattttcct 133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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