View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13375_low_8 (Length: 549)
Name: NF13375_low_8
Description: NF13375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13375_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 514
Target Start/End: Complemental strand, 36995972 - 36995453
Alignment:
| Q |
1 |
cgttgcgatttgagttatttgctgacatagacaacactccaatgttgaacttttatgcacttaacacattagcgataattcacccccttgaccccgggcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36995972 |
cgttgcgatttgagttatttgctgacatagacaacaatccaatgttgaacttttatgcacttaacacattagcgataattcacccccttgaccccgggcg |
36995873 |
T |
|
| Q |
101 |
aactgattgttttggtaggttttttattatttnnnnnnnnnnnnn--gctttactattactaaccatttcatttgagtttattcagatcgatttcactta |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36995872 |
aactgattgttttggtaggttttttattatttaaaaaaaaaaaaaaagctttactattactaaccatttcatttgagtttattcagatcgatttcactta |
36995773 |
T |
|
| Q |
199 |
gtttgtaaggctcacccgggggatgtatttgatcttgagcgtgcctgtgaaaaaggttttcttgacgctgagggtaatgttgaagtagaattgcagattc |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36995772 |
gtttgtaaggctcacccgggggatgtatttgatcttgagcgtgcctgtgaaaatggttttcttgacgctgagggtaatgttgaagtagaattgtagattc |
36995673 |
T |
|
| Q |
299 |
aggtgttggggtaagtcggtatgtatgcattagaaatctcaatctcattctactgttgttggtcaatatactcataaatttttaaccttgttactaagta |
398 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
36995672 |
aggtgttggggtaagtcgttatgtatgcattagaaatctcaatctcattctactgttgttggtcaatatactcataaattttttaccttgttactaagta |
36995573 |
T |
|
| Q |
399 |
tattgaccaataa----cattgggtgtcactgaattccatgcaactcattgtatgattgtttttaatgcacagagaaaatgtcttaccacctctccttgc |
494 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
36995572 |
tattgaccaataacaggcattgggtgtcactgaattccatgcaactcattgtatgattgtttttaatgcacagagaaaatgtcttcccacctctccttgt |
36995473 |
T |
|
| Q |
495 |
aaggaagtatcgagctgagc |
514 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
36995472 |
aaggaagtattgagctgagc |
36995453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 1 - 507
Target Start/End: Complemental strand, 37005914 - 37005404
Alignment:
| Q |
1 |
cgttgcgatttgagttatttgctgacatagacaacactccaatgttgaacttttatgcacttaacacattagcgataattcacccccttgaccccgggcg |
100 |
Q |
| |
|
|||||| |||| ||||||||||||| |||||||| ||||| ||||||||||||||| || || |||||||||||||||||| ||||||||||||| |
|
|
| T |
37005914 |
cgttgcaatttcagttatttgctgatggagacaacaatccaaggttgaacttttatgctctgtgcaaattagcgataattcacccacttgaccccgggca |
37005815 |
T |
|
| Q |
101 |
aactgattgttttggtaggttttttattat-------ttnnnnnnnnnnnnngctttactattactaaccatttcatttgagtttattcagatcgatttc |
193 |
Q |
| |
|
|||||||||||||||||| |||||| |||| || | |||||| ||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
37005814 |
aactgattgttttggtag-tttttttttataaagttattgttttttaaaaaagaattactaatactaactatttcatttgagtttattcagatgcattta |
37005716 |
T |
|
| Q |
194 |
acttagtttgtaaggctcacccgggggatgtatttgatcttgagcgtgcctgtgaaaaaggttttcttgacgctgagggtaatgttgaagtagaattgca |
293 |
Q |
| |
|
||| |||| ||| | | || ||| |||||||||| |||| | ||||||||||| || |||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
37005715 |
gcttcgtttctaaagattacatgggcgatgtatttgggcttgcggctgcctgtgaaatagattttcttgaccctgagggtaatgttaaagtagaattgca |
37005616 |
T |
|
| Q |
294 |
gattcaggtgttggggtaagtcggtatgtatgcattagaaatctcaatctcattctactgttgttggtcaatatactcataaatttttaaccttgttact |
393 |
Q |
| |
|
|||||||||| | ||||||||| ||||| ||||||||| ||| |||||||| | || |||||||| ||||||||| | |||||||| | ||||| |
|
|
| T |
37005615 |
gattcaggtgattgggtaagtcattatgtgtgcattaga------aatatcattctatttttattggtcaacatactcatagaattttaaccatattact |
37005522 |
T |
|
| Q |
394 |
aagtatattgaccaataa----cattgggtgtcactgaattccatgcaactcattgtatgattgtttttaatgcacagagaaaatgtcttaccacctctc |
489 |
Q |
| |
|
||||||||| | |||||| ||| |||||||||| ||| ||||||||||||||| |||||||||||||||||||| ||||| || || || ||| || |
|
|
| T |
37005521 |
aagtatatttatcaataataggcatcaggtgtcactgcattacatgcaactcattgtgtgattgtttttaatgcacagtgaaaaagttttcccgcctttc |
37005422 |
T |
|
| Q |
490 |
cttgcaaggaagtatcga |
507 |
Q |
| |
|
|||| |||||||| |||| |
|
|
| T |
37005421 |
cttgaaaggaagtttcga |
37005404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 149 - 514
Target Start/End: Original strand, 13684404 - 13684773
Alignment:
| Q |
149 |
ttactattactaaccatttcatttgagtttattcagatcgatttcacttagtttgtaaggctcacccgggggatgtatttgatcttgagcgtgcctgtga |
248 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||| |||| |||||||||| ||| |||| | |||||||| ||||||||||||||| ||| |
|
|
| T |
13684404 |
ttactaatactaactatttcatttgagtttattcagatcgattccactcagtttgtaagactcgcccgcgatatgtatttcatcttgagcgtgcctatga |
13684503 |
T |
|
| Q |
249 |
aaaaggttttcttgacgctgagggtaatgttgaagtagaattgcagattcaggtgttggggtaagtcggtatgtatgcattagaaatctcaatctcattc |
348 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13684504 |
aaaaggttttcttcacgctgagggtaatgttcaagtagaattgcagattcagatgtttgggtaagtcgttatgtatgcattagaaatctcaatctcattc |
13684603 |
T |
|
| Q |
349 |
tactgttgttggtcaatatactcataaatttttaaccttgttactaagtatattgaccaataa----cattgggtgtcactgaattccatgcaactcatt |
444 |
Q |
| |
|
|||| ||||||||||||||||||||| | |||| ||| | ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13684604 |
tactattgttggtcaatatactcatagaatttttaccgtattactgagtatattgaccaataacaagcattgggtgtcactgaattccatgcaactcatt |
13684703 |
T |
|
| Q |
445 |
gtatgattgtttttaatgcacagagaaaatgtcttaccacctctccttgcaaggaagtatcgagctgagc |
514 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||| || |||||||||| || |||||||||| |||||| |
|
|
| T |
13684704 |
gtatgattgtttttaatgcgcagagaaaatttcttcccgcctctccttgtaaagaagtatcgaactgagc |
13684773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 156 - 514
Target Start/End: Complemental strand, 22191953 - 22191591
Alignment:
| Q |
156 |
tactaaccatttcatttgagtttattcagatcgatttcacttagtttgtaaggctcacccgggggatgtatttgatcttgagcgtgcctgtgaaaaaggt |
255 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||| |||| |||||||||| ||||| ||| ||| ||| ||||||||| ||| |||||||||||| |
|
|
| T |
22191953 |
tactaactatttcatctgagtttattcagatcgattccactcagtttgtaagattcacctagggtatgattttcatcttgagcatgcttgtgaaaaaggt |
22191854 |
T |
|
| Q |
256 |
tttcttgacgctgagggtaatgttgaagtagaattgcagattcaggtgttggggtaagtcggtatgtatgcattagaaatctcaatctcattctactgtt |
355 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||| |||| |||||||||| ||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
22191853 |
tttcttgacgctgaggataatgttaaagtagaattgcagattcaaatgtttgggtaagtcgttatgtatgcataagaaatctcaatctcattttactgtt |
22191754 |
T |
|
| Q |
356 |
gttggtcaatatactcataaatttttaaccttgttactaagtatattgaccaataa----cattgggtgtcactgaattccatgcaactcattgtatgat |
451 |
Q |
| |
|
||||||||||||||||||| | |||| || | ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
22191753 |
gttggtcaatatactcatagaatttttacaatattactaagtatattgaccaataacatgcattcggtgtcactgaattccatgcaactcattgtatgat |
22191654 |
T |
|
| Q |
452 |
tgtttttaatgcacagagaaaatgtcttaccacctctccttgcaaggaagtatcgagctgagc |
514 |
Q |
| |
|
|||| |||||||||||||||||| |||| || |||||| ||| || || ||||| | |||||| |
|
|
| T |
22191653 |
tgttgttaatgcacagagaaaatatcttcccgcctctctttgtaaagaggtatcaaactgagc |
22191591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 412 - 514
Target Start/End: Complemental strand, 26648486 - 26648384
Alignment:
| Q |
412 |
cattgggtgtcactgaattccatgcaactcattgtatgattgtttttaatgcacagagaaaatgtcttaccacctctccttgcaaggaagtatcgagctg |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||| | |||||||||| || |||||||||||||| |
|
|
| T |
26648486 |
cattgggtgtcactgaattccatgcaactcattgtatgatcgttattaatgcacagagaaaatttcttccagcctctccttgtaaagaagtatcgagctg |
26648387 |
T |
|
| Q |
512 |
agc |
514 |
Q |
| |
|
||| |
|
|
| T |
26648386 |
agc |
26648384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 13684244 - 13684366
Alignment:
| Q |
1 |
cgttgcgatttgagttatttgctgacatagacaacactccaatgttgaacttttatgcacttaacacattagcgataattcacccccttgaccccgggcg |
100 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||| ||||| |||||| ||||||||||| | |||| |||||||||||||||||| | || | ||| |
|
|
| T |
13684244 |
cgttccgatttgagttatttgctgacagagacaacattccaaggttgaaattttatgcactgagcacagtagcgataattcacccccgtaactaccggct |
13684343 |
T |
|
| Q |
101 |
aactgattgttttggtaggtttt |
123 |
Q |
| |
|
||||||||||| |||||||||| |
|
|
| T |
13684344 |
aactgattgttcaggtaggtttt |
13684366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 244 - 330
Target Start/End: Complemental strand, 26648617 - 26648531
Alignment:
| Q |
244 |
tgtgaaaaaggttttcttgacgctgagggtaatgttgaagtagaattgcagattcaggtgttggggtaagtcggtatgtatgcatta |
330 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||| | || ||||||||| ||||||||||||| |
|
|
| T |
26648617 |
tgtgaagaaggttttcttgacgatgagggtaatgttaaagtagaattgcagattcagatttttgggtaagtccttatgtatgcatta |
26648531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 26648846 - 26648784
Alignment:
| Q |
30 |
gacaacactccaatgttgaacttttatgcacttaacacattagcgataattcacccccttgac |
92 |
Q |
| |
|
||||||| |||| ||||||| ||||||| ||| |||||| |||||||||||||||||| |||| |
|
|
| T |
26648846 |
gacaacaatccagtgttgaaattttatgtactgaacacagtagcgataattcacccccatgac |
26648784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 178; Significance: 9e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 164 - 489
Target Start/End: Complemental strand, 8598315 - 8597983
Alignment:
| Q |
164 |
atttcatttgagtttattcagatcgatttcacttagtttgtaaggctcacccgggggatgtatttgatcttgagcgtgcctgtgaaaaaggttttcttga |
263 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||| |||||||||| ||||||||||| |||||| |||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
8598315 |
atttcatttgagtttaatcagatcgattccactcagtttgtaagactcacccggggtatgtatatgattttgagcgtgcctgtgaaaatggttttcttga |
8598216 |
T |
|
| Q |
264 |
cgctgagggtaatgttgaagtagaattgcagattcaggtgttggggtaagtcggtatgtatgcattagaaatctcaatctcattctactgttgttggtc- |
362 |
Q |
| |
|
||| |||| ||| ||||||||||||||||| ||||| |||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8598215 |
tgctaagggcaatcttgaagtagaattgcagtttcagatgtttgggtaagtcgttatttatgcattagaaatctcaatctcattctactgttgttggtca |
8598116 |
T |
|
| Q |
363 |
--aatatactcataaatttttaaccttgttactaagtatattgaccaataa----cattgggtgtcactgaattccatgcaactcattgtatgattgttt |
456 |
Q |
| |
|
|||||||||||| | |||| ||| | ||||||||||||||||||||||| || |||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
8598115 |
ataatatactcatataatttttaccatattactaagtatattgaccaataacagtcaatgggtgccattgaattccatgcaactcattgtatgattgttc |
8598016 |
T |
|
| Q |
457 |
ttaatgcacagagaaaatgtcttaccacctctc |
489 |
Q |
| |
|
| |||||||||| ||||||||| || |||||| |
|
|
| T |
8598015 |
taaatgcacagactaaatgtcttcccgcctctc |
8597983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 8598622 - 8598506
Alignment:
| Q |
9 |
tttgagttatttgctgacatagacaacactccaatgttgaacttttatgcacttaacacattagcgataattcacccccttgaccccgggcgaactgatt |
108 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| |||| | ||||||| ||| ||||||||||||||||||||| ||||| || ||| || ||||| | |
|
|
| T |
8598622 |
tttgagttatttgctgacaaagacaacattccaaggttggaattttatggactgaacacattagcgataattcactcccttcactccgagctaactgtat |
8598523 |
T |
|
| Q |
109 |
gttttggtaggtttttt |
125 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
8598522 |
gttttggtaggtttttt |
8598506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University