View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13375_low_9 (Length: 489)

Name: NF13375_low_9
Description: NF13375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13375_low_9
NF13375_low_9
[»] scaffold0256 (3 HSPs)
scaffold0256 (151-342)||(10295-10485)
scaffold0256 (339-438)||(10169-10268)
scaffold0256 (23-117)||(10534-10628)
[»] scaffold0133 (5 HSPs)
scaffold0133 (115-344)||(9673-9906)
scaffold0133 (109-344)||(14012-14251)
scaffold0133 (338-478)||(9509-9649)
scaffold0133 (370-478)||(13857-13965)
scaffold0133 (22-80)||(14269-14327)
[»] chr6 (5 HSPs)
chr6 (337-478)||(16782107-16782248)
chr6 (162-254)||(16782917-16783010)
chr6 (184-253)||(16875996-16876065)
chr6 (286-344)||(16659176-16659233)
chr6 (286-339)||(16661196-16661248)
[»] chr3 (3 HSPs)
chr3 (347-467)||(38938385-38938504)
chr3 (250-308)||(38938275-38938333)
chr3 (36-82)||(38942398-38942444)
[»] chr5 (2 HSPs)
chr5 (250-341)||(11982848-11982938)
chr5 (420-466)||(11983122-11983168)


Alignment Details
Target: scaffold0256 (Bit Score: 136; Significance: 1e-70; HSPs: 3)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 151 - 342
Target Start/End: Complemental strand, 10485 - 10295
Alignment:
Q  151 tgcacttcaggtacacttgccaacttgaaatattaaataattagtattacaattatttggtattggattctctctgatgaaatctaggccacacaagaac 250  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  10485 tgcacttgaggtacact-gccaacttgaaatattaaataattagtattacaattatatggtattggattctctttgatgaaatctaggccacacaagaac 10387  T
Q  251 aaatgaatgggcatgatgttgtttcataagataagttttccaattttgttttattccccttcattgccatgtagcttcacaacttgtttttt 342  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||| |||| ||||  ||||| |||||||  ||||||||||||||||||    
T  10386 aaatgaacgggcatgatgttgttacataagataagttttccaattttttttttttccttttcatggccatgtgccttcacaacttgtttttt 10295  T

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Target: scaffold0256; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 339 - 438
Target Start/End: Complemental strand, 10268 - 10169
Alignment:
Q  339 ttttccatagcagccaattttgacatgttgcagaagaactacatccattgatttaatatataatctttgaaaataaatcacaacgcatatttcatcttcc 438  Q
    ||||| ||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  10268 ttttctatagcagtcaattttgacatgttgcaaaagaactacatccactgatttaatatataatctttgaaaacaaataacaacgcatatttcatcttcc 10169  T

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Target: scaffold0256; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 23 - 117
Target Start/End: Complemental strand, 10628 - 10534
Alignment:
Q  23 ttctctctagagtattaaagaaagacaccgagaaaggatacctattattttgagataaacaatagtgcatgaaagtaacatgatagatacagttg 117  Q
    |||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  10628 ttctgtctagagtattaaagaaagacgccaagaaaggatacctattattttgagataaacaatagtgcatgaaagtaacataatagatatagttg 10534  T

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Target: scaffold0133 (Bit Score: 134; Significance: 1e-69; HSPs: 5)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 115 - 344
Target Start/End: Complemental strand, 9906 - 9673
Alignment:
Q  115 ttgccaacttgatgccaccacaccatacttggacag--tgcacttcaggtacacttgccaacttgaaatattaaataat---tagtattacaattatttg 209  Q
    ||||||||||||||||| | |||||||||||  |    ||||||||||||||||| |||||||||||||||||||||||   ||||||||||||||||||    
T  9906 ttgccaacttgatgccatcccaccatacttgatccacttgcacttcaggtacact-gccaacttgaaatattaaataataattagtattacaattatttg 9808  T
Q  210 gtattggattctctctgatgaaatctaggccacacaagaacaaatgaatgggcatgatgttgtttcataagataagttttccaattttgttttattcccc 309  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||     
T  9807 gtattggattttctttgatgaaatctaggccacacaagaacaaatgaacgagcatgatgttgtttcataagataagttttccaattttgtttttttccct 9708  T
Q  310 ttcattgccatgtagcttcacaacttgttttttcc 344  Q
    ||||| |||||||  |||||  |||||||||||||    
T  9707 ttcatggccatgtgccttcaacacttgttttttcc 9673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 109 - 344
Target Start/End: Complemental strand, 14251 - 14012
Alignment:
Q  109 atacagttgccaacttgatgccaccacaccatacttggacag--tgcacttcaggtacacttgccaacttgaaatattaaataat---tagtattacaat 203  Q
    ||||| ||||||||||||| ||| | |||||||||||  |    ||||||||||||||||| |||||||||||||||||||||||   ||||||||||||    
T  14251 atacacttgccaacttgataccatcccaccatacttgatccacttgcacttcaggtacact-gccaacttgaaatattaaataataattagtattacaat 14153  T
Q  204 tatttggtattggattctctctgatgaaatctaggccacacaagaacaaatgaatgggcatgatgttgtttcataagataagttttccaattttgtttta 303  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||     
T  14152 tatttggtattggattctctttgacgaaatctaggccacacaagaacaaatgaacggtcatgatgttgtttcatatgataagttttccaattttgttttt 14053  T
Q  304 ttccccttcattgccatgtagcttcacaacttgttttttcc 344  Q
    ||||  ||||| |||||||  ||||||||||||||||||||    
T  14052 ttccttttcatggccatgtgccttcacaacttgttttttcc 14012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 338 - 478
Target Start/End: Complemental strand, 9649 - 9509
Alignment:
Q  338 tttttccatagcagccaattttgacatgttgcagaagaactacatccattgatttaatatataatctttgaaaataaatcacaacgcatatttcatcttc 437  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||| ||||||||||||||    
T  9649 tttttctatagcagccaattttgacatgttgcagaagaactacatccactgatttaatatataatctttgaaaacaaataacaactcatatttcatcttc 9550  T
Q  438 ctagaccaaagtcatctccaatccaaacctctttgattcat 478  Q
    ||||| |||| |||||||||||||||||  |||||||||||    
T  9549 ctagagcaaaatcatctccaatccaaacaactttgattcat 9509  T

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Target: scaffold0133; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 370 - 478
Target Start/End: Complemental strand, 13965 - 13857
Alignment:
Q  370 agaagaactacatccattgatttaatatataatctttgaaaataaatcacaacgcatatttcatcttcctagaccaaagtcatctccaatccaaacctct 469  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| |||| |||||||||||||||||  ||    
T  13965 agaagaactacatccactgatttaatatataatctttgaaaacaaataacaactcatatttcatcttcctagagcaaaatcatctccaatccaaacaact 13866  T
Q  470 ttgattcat 478  Q
    |||||||||    
T  13865 ttgattcat 13857  T

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Target: scaffold0133; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 14327 - 14269
Alignment:
Q  22 gttctctctagagtattaaagaaagacaccgagaaaggatacctattattttgagataa 80  Q
    ||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  14327 gttctgtctagagtattaaagaaagacgccaagaaaggatacctattattttgagataa 14269  T

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Target: chr6 (Bit Score: 78; Significance: 4e-36; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 337 - 478
Target Start/End: Complemental strand, 16782248 - 16782107
Alignment:
Q  337 ttttttccatagcagccaattttgacatgttgcagaagaactacatccattgatttaatatataatctttgaaaataaatcacaacgcatatttcatctt 436  Q
    ||||||| |||||| ||||| || ||| ||||||||| ||||||||||| |||||||||| |||||||||||||| |||| ||||| |||||||||||||    
T  16782248 ttttttctatagcaaccaatattcacaagttgcagaaaaactacatccactgatttaatagataatctttgaaaacaaataacaactcatatttcatctt 16782149  T
Q  437 cctagaccaaagtcatctccaatccaaacctctttgattcat 478  Q
    |||||| |||||||||||| |||| ||||  |||||||||||    
T  16782148 cctagagcaaagtcatctctaatctaaacaactttgattcat 16782107  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 162 - 254
Target Start/End: Complemental strand, 16783010 - 16782917
Alignment:
Q  162 tacacttgccaacttgaaatat-taaataattagtattacaattatttggtattggattctctctgatgaaatctaggccacacaagaacaaat 254  Q
    ||||||| |||||||||||||| ||||||||||||||||| ||||||||  | ||||||||||||| |||| |||||| ||| | |||||||||    
T  16783010 tacacttcccaacttgaaatatataaataattagtattactattatttgtgactggattctctctggtgaagtctaggtcaccctagaacaaat 16782917  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 184 - 253
Target Start/End: Original strand, 16875996 - 16876065
Alignment:
Q  184 taaataattagtattacaattatttggtattggattctctctgatgaaatctaggccacacaagaacaaa 253  Q
    ||||||||||||||||  ||||||||  | ||||||||||| | ||||||||||||||||||||||||||    
T  16875996 taaataattagtattaatattatttgtgactggattctctccggtgaaatctaggccacacaagaacaaa 16876065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 344
Target Start/End: Complemental strand, 16659233 - 16659176
Alignment:
Q  286 ttttccaattttgttttattccccttcattgccatgtagcttcacaacttgttttttcc 344  Q
    |||||||| |||||||| |||||||||||||||||||| ||| ||||| ||||||||||    
T  16659233 ttttccaaatttgtttt-ttccccttcattgccatgtaccttaacaacatgttttttcc 16659176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 286 - 339
Target Start/End: Complemental strand, 16661248 - 16661196
Alignment:
Q  286 ttttccaattttgttttattccccttcattgccatgtagcttcacaacttgttt 339  Q
    |||||||||||| |||| |||||||||||||||||||| ||||||||| |||||    
T  16661248 ttttccaattttatttt-ttccccttcattgccatgtaccttcacaacatgttt 16661196  T

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Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 347 - 467
Target Start/End: Original strand, 38938385 - 38938504
Alignment:
Q  347 agcagccaattttgacatgttgcagaagaactacatccattgatttaatatataatctttgaaaataaatcacaacgcatatttcatcttcctagaccaa 446  Q
    |||||||||| |||||| ||||||||||||||||||||| |||||||||| | |||||||||||| |||| || || ||||||||||||||||||| |||    
T  38938385 agcagccaatattgacaagttgcagaagaactacatccactgatttaatagacaatctttgaaaaaaaataactacacatatttcatcttcctagagcaa 38938484  T
Q  447 agtcatctccaatccaaacct 467  Q
    || ||||||||||||||||||    
T  38938485 ag-catctccaatccaaacct 38938504  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 250 - 308
Target Start/End: Original strand, 38938275 - 38938333
Alignment:
Q  250 caaatgaatgggcatgatgttgtttcataagataagttttccaattttgttttattccc 308  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||    
T  38938275 caaatgaatggacatgatgttgtttcatatgataagttttccaattttgtttttttccc 38938333  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 38942398 - 38942444
Alignment:
Q  36 attaaagaaagacaccgagaaaggatacctattattttgagataaac 82  Q
    |||||||||||||||| ||||||||||| || |||||||| ||||||    
T  38942398 attaaagaaagacaccaagaaaggatacttaatattttgatataaac 38942444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 250 - 341
Target Start/End: Original strand, 11982848 - 11982938
Alignment:
Q  250 caaatgaatgggcatgatgttgtttcataagataagttttccaattttgttttattccccttcattgccatgtagcttcacaacttgttttt 341  Q
    ||||||||||| ||||||||||||| |   ||||||||||||||||||||||| ||||||||||||| |||||| |||  ||||||||||||    
T  11982848 caaatgaatggacatgatgttgtttgaattgataagttttccaattttgtttt-ttccccttcattgtcatgtaccttaccaacttgttttt 11982938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 420 - 466
Target Start/End: Original strand, 11983122 - 11983168
Alignment:
Q  420 aacgcatatttcatcttcctagaccaaagtcatctccaatccaaacc 466  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||    
T  11983122 aacgcatatttcatcttcatagagcaaagtcatctccaatccaaacc 11983168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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