View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13376_low_1 (Length: 459)
Name: NF13376_low_1
Description: NF13376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13376_low_1 |
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| [»] scaffold0115 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 42 - 448
Target Start/End: Complemental strand, 41337265 - 41336859
Alignment:
| Q |
42 |
tatatgcagagacacaaaccctaaaataattgtctgcatttcatatgatgagcataaacacaacacacctgccttcatataatggccacactcaaaatca |
141 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41337265 |
tatatgcatagacacaaaccctaaaataattgtctgcatttcatatgatgagcataaacacaacacacctgccttcatataatggccacactcaaattca |
41337166 |
T |
|
| Q |
142 |
ttgttcataaatatgcttaataatactatgtagcttccttnnnnnnnnntactatgtagctaggcatctcaaagcgacaccttgtgcagactaattaaag |
241 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41337165 |
ttgttcataaatatgcttaataatactatgtagcttccttaaaaaaaaatactatgtagctaggcatctcaaagcgaccccttgtgcagactaattaaag |
41337066 |
T |
|
| Q |
242 |
aaaataacacaaacttaacaaaagaacacataacaaatacaaagcttccttttccaatgacctacaagtaaaatcacaaattaccaattattagtttcac |
341 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41337065 |
aaaataacacaaactcaacaaaagaacacataacaaatacaaagcttccttttccaatgacctacaagtaaaatcacaaattaccaattattagtttcac |
41336966 |
T |
|
| Q |
342 |
tctctttaaccagaagagggggctatttgtgaaaaagtggtgaaactttttaaaaagtaattcatgattttaccttaattattgattccaatcataactt |
441 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41336965 |
tctctttaaccagaagagggggctatttgtgaaaaagtggtgaaactttttaaaaagtaattcatgattttaccttaattattgattccaatcataactt |
41336866 |
T |
|
| Q |
442 |
gatgatg |
448 |
Q |
| |
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||||||| |
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| T |
41336865 |
gatgatg |
41336859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 42 - 266
Target Start/End: Complemental strand, 41323096 - 41322871
Alignment:
| Q |
42 |
tatatgcagagacacaaaccctaaaataattgtctgcatttcatatgatgagcataaacacaacacacctgccttcatataatggccacactcaaaatca |
141 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||| |
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| T |
41323096 |
tatatgcagagacacaaaccctaaaataattgtcagtatttcatatgatgagcataaacacaacacacttgccttcatataatggccacactcatattca |
41322997 |
T |
|
| Q |
142 |
ttgttcataaatatgcttaataatactatgtagcttcctt-nnnnnnnnntactatgtagctaggcatctcaaagcgacaccttgtgcagactaattaaa |
240 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41322996 |
ttgttcataaatatgcttaataatactatgtagcttccttaaaaaaaaaaaactatgtagctaggcatctcaaagcgacaccttgtgcagactaattaaa |
41322897 |
T |
|
| Q |
241 |
gaaaataacacaaacttaacaaaaga |
266 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
41322896 |
gaaaataacacaaacttaacaaaaga |
41322871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 42 - 448
Target Start/End: Complemental strand, 20922714 - 20922301
Alignment:
| Q |
42 |
tatatgcagagacacaaaccctaaaataattgtctgcatttcatatgatgagcataaacacaacacacctgccttcatataatggccacactcaaaatca |
141 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
20922714 |
tatatgcaaagacacaaaccctaaaataattgtctgcatttcatatgatgagcataaacacaacacacctgccttcatataatggccacactcaaattca |
20922615 |
T |
|
| Q |
142 |
ttgttcataaatatgcttaataatactatgtagcttcctt-nnnnnnnnntactatgtagctaggcatctcaaagcgacaccttgtgcagactaattaaa |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
20922614 |
ttgttcataaatatgcttaataatactatgtagcttccttaaaaaaaaaatactatgtagctaggcatctcgaagcgacaccttgtgcagactaattaaa |
20922515 |
T |
|
| Q |
241 |
gaaaataacacaaacttaacaaaagaacacataacaaatacaaagcttccttttccaatgacct------acaagtaaaatcacaaattaccaattatta |
334 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
20922514 |
gaaaataacacaaacttaacaaaagaacacataacaaacacaaagcttccttttccaatgacctataagcacaagtaaaatcataaattaccaattatta |
20922415 |
T |
|
| Q |
335 |
gtttcactctctttaaccagaagagggggctatttgtgaaaaagtggtgaaactttttaaaaagtaattcatgattttaccttaattattgattccaatc |
434 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
20922414 |
gtttcactctctttaaccagaagagggggctatttgagaaaaattggtgaaactttttaaaaagtaattcatgattttaccttaattattaattccaatt |
20922315 |
T |
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| Q |
435 |
ataacttgatgatg |
448 |
Q |
| |
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|||||||||||||| |
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| T |
20922314 |
ataacttgatgatg |
20922301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 42 - 448
Target Start/End: Complemental strand, 20904111 - 20903701
Alignment:
| Q |
42 |
tatatgcagagacacaaaccctaaaataattgtctgcatttcatatgatgagcataaacacaacacacctgccttcatataatggccacactcaaaatca |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
20904111 |
tatatgcagagacacaaaccctaaaataattgtctgcatttcatatgatgagcataaacacaacacacctgctttcatataatggccacactcaaattca |
20904012 |
T |
|
| Q |
142 |
ttgttcataaatatgcttaataatactatgtagcttccttnnnnnnnnntactatgtagctaggcatctcaaagcgacaccttgtgcagactaattaaag |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20904011 |
ttgttcataaatatgcttaataatactatgtagcttcctt-aaaaaaaatattatgtagctaggcatctcaaagcgacaccttgtgcagactaattaaag |
20903913 |
T |
|
| Q |
242 |
aaaataacacaaacttaacaaaagaacacataacaaatacaaagcttccttttccaatgacct------acaagtaaaatcacaaattaccaattattag |
335 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
20903912 |
aaaataacacaaacttaacaaaagaacacataacaaacacaaagcttccttttccaatgacctataagcacaagtaaaatcataaattaccaattattag |
20903813 |
T |
|
| Q |
336 |
tttcactctctttaaccagaagagggggctatttgtgaaaaagtggtgaaactttttaaaaagtaattcatgattttaccttaattattgattccaatca |
435 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
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|
| T |
20903812 |
tttcactctcttaaaccagaagagggggctatttg-gaaaaattggtgaaactttttaaaaagtaattcatgattttatcttaattattgattccaatta |
20903714 |
T |
|
| Q |
436 |
taacttgatgatg |
448 |
Q |
| |
|
||||||||||||| |
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|
| T |
20903713 |
taacttgatgatg |
20903701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 334 - 430
Target Start/End: Complemental strand, 47522 - 47429
Alignment:
| Q |
334 |
agtttcactctctttaaccagaagagggggctatttgtgaaaaagtggtgaaactttttaaaaagtaattcatgattttaccttaattattgattcc |
430 |
Q |
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|||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47522 |
agtttcactctctttaaccaaaagatg---ctatttgtgaaaaagtggtgaaactttttaaaaagtaattcatgattttaccttaattattgattcc |
47429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 367 - 430
Target Start/End: Original strand, 47541 - 47603
Alignment:
| Q |
367 |
tttgtgaaaaagtggtgaaactttttaaaaagtaattcatgattttaccttaattattgattcc |
430 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47541 |
tttgtgaaaaagtggtgaa-ctttttaaaaagtaattcatgattttaccttaattattgattcc |
47603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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