View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13376_low_2 (Length: 362)
Name: NF13376_low_2
Description: NF13376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13376_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 8e-86; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 186 - 346
Target Start/End: Original strand, 25525714 - 25525874
Alignment:
| Q |
186 |
gtgaaaagtagatgaacaatctaattaactaatttggcataaataaaagcattattgacttcaaaacctgctatcactcttctcttcacgtgaaacaaat |
285 |
Q |
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| T |
25525714 |
gtgaaaagtagatgaacaatctaattaactaatttggcataaataaaagcattattgacttcaaaacctgctatcactcttctcttcacgtgaaacaaat |
25525813 |
T |
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| Q |
286 |
aaaggaaggtaaactacatgaggatcatctctctattgtttcaacctctccccgccccttt |
346 |
Q |
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| T |
25525814 |
aaaggaaggtaaactacatgaggatcatctctctattgtttcaacctctccccgccccttt |
25525874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 25525552 - 25525641
Alignment:
| Q |
24 |
ccaaaacagaaatcagaaactaagatgcatacatataaagcacgttgcagatgagaaaatgaaaacaactaaactggtataaacaggtga |
113 |
Q |
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| T |
25525552 |
ccaaaacagaaatcagaaactaagatgcatacatataaagcacgttgcagatgagaaaatgaaaacaactaaactggtataaacaggtga |
25525641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 276 - 333
Target Start/End: Complemental strand, 25516566 - 25516509
Alignment:
| Q |
276 |
tgaaacaaataaaggaaggtaaactacatgaggatcatctctctattgtttcaacctc |
333 |
Q |
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| T |
25516566 |
tgaaacacataaaggaaggtaaataacatggggatcatctctctattgttccaacctc |
25516509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 25539212 - 25539248
Alignment:
| Q |
72 |
agatgagaaaatgaaaacaactaaactggtataaaca |
108 |
Q |
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| T |
25539212 |
agatgagaaaatgaaaacaactaaactcgcataaaca |
25539248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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