View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13377_low_10 (Length: 353)
Name: NF13377_low_10
Description: NF13377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13377_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 26 - 337
Target Start/End: Complemental strand, 22101538 - 22101229
Alignment:
| Q |
26 |
caattcaccaagtaggacgctggcggaagcacgttgaagggaactgaatacacca---gacggtgtcattcacagacactctcctgtaccatcgtatctt |
122 |
Q |
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| T |
22101538 |
caattcaccaagtaggacgctggcggaagcacgttgaagggaactgaatacaccaaacgacggtgtcattcaaagacactctcctgtaccatcggatctg |
22101439 |
T |
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| Q |
123 |
aagtaaatcgatccttgaggggttttaaaaccaaagaacttggagcaccgcacctccgactgctccaacttgaaaccagacgcagatggtgctcaaacac |
222 |
Q |
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| T |
22101438 |
gagtaaatcgacccttgaggggttttaaaaccaaagaacttggagcatc-----tccgactgctccaactcaaaaccagacgcagatggtgctcaaacac |
22101344 |
T |
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| Q |
223 |
ataccaacacgttaacaaaccgacgctcaagaccaccagaaaggacagccacaaggcagagccgctagcagttctggcgtttagacaccccagcggggta |
322 |
Q |
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|||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| || |
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| T |
22101343 |
ataccaacactttaagaaaccgacgctcaagaccaccagaaaggacagccaaaaggcagagccgccagcagttctggcgtttagacaccccagcgggtta |
22101244 |
T |
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| Q |
323 |
aagagtggtacagag |
337 |
Q |
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||| ||||| ||||| |
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| T |
22101243 |
aagggtggtgcagag |
22101229 |
T |
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