View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13377_low_11 (Length: 351)
Name: NF13377_low_11
Description: NF13377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13377_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 10 - 332
Target Start/End: Original strand, 43017968 - 43018290
Alignment:
| Q |
10 |
gacatcatcatgtatttttgcattcctttgtcttgtttgtataaaatgctcaatattagcttttgactatgctgacgtggaaaaaaggaccagtcaattt |
109 |
Q |
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| T |
43017968 |
gacataatcatgtatttttgcattcctttgtcttgtttgtataaaatgctcaatattagcttttgactatgctgacgtggaaaaaaggaccagtcaattt |
43018067 |
T |
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| Q |
110 |
tcattgcattgttttctgtgtacaatattcctcagagtttgaaatgaatatctatatacttatttttcatttgaaaaagctaaccctagctaattaatct |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43018068 |
tcattgcattgttttctgtgtacaatattcctcagagtttgaaatgaatatctatatacttatttttcatttgaaaaagctaaccctagctaattaatct |
43018167 |
T |
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| Q |
210 |
tcttttgatgatgatcttcattacatttcttcttacaggagtcatctattagaaaccaacaagaagctgagtggttgaaatactcttcttactggccagt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43018168 |
tcttttgatgatgatcttcattacatttcttcttacaggagtcatctattagaaaccaacaagaagctgagtggttgaaatactcttcttactggccagt |
43018267 |
T |
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| Q |
310 |
cgaccctcatgacaacaaccatc |
332 |
Q |
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||||||||||||||||||||||| |
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| T |
43018268 |
cgaccctcatgacaacaaccatc |
43018290 |
T |
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