View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13377_low_14 (Length: 298)

Name: NF13377_low_14
Description: NF13377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13377_low_14
NF13377_low_14
[»] chr1 (1 HSPs)
chr1 (1-291)||(28740663-28740953)


Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 28740953 - 28740663
Alignment:
Q  1 ctgctaaaggaatggttcttaccccctctcccaagaaaccattaggcctccgacagccatcacccaagattggcttctttgacagggtgagtgttgtttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28740953 ctgctaaaggaatggttcttaccccctctcccaagaaaccattaggcctccgacagccatcacccaagattggcttctttgacagggtgagtgttgtttt 28740854  T
Q  101 atttgtgttaaatagacttaggaactgattttgtctgtataatgttcatggacatgttatcaatctttgtatggctaaattttaattaagccacctagct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28740853 atttgtgttaaatagacttaggaactgattttgtctgtataatgttcatggacatgttatcaatctttgtatggctaaattttaattaagccacctagct 28740754  T
Q  201 taaaagtcaaaagcaatgtattggttttgcaagagtggaataaatgtttctggacatggtgnnnnnnnccctcattgctttcttcatctct 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  28740753 taaaagtcaaaagcaatgtattggttttgcaagagtggaataaatgtttctggacatggtgtttttttccctcattgctttcttcatctct 28740663  T

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