View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13377_low_15 (Length: 290)
Name: NF13377_low_15
Description: NF13377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13377_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 4 - 181
Target Start/End: Complemental strand, 55201980 - 55201803
Alignment:
| Q |
4 |
aaattgtccatataattgtgtccaagctggagctatctggacgtaaatttggaagtaatcgtaatggaagaaatattatataattgtggtaccacatgtt |
103 |
Q |
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| T |
55201980 |
aaattgtccatataattgtgtccaacttggagctatctggacgtaaatttggaggtaatggtaatggaagaaatattatataattgtggtaccatatgtt |
55201881 |
T |
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| Q |
104 |
catagatgctgagtattcaggaaatgcacaaagtttaaactggacaaaagaggcatgtgaccatttcacttttgaagc |
181 |
Q |
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| T |
55201880 |
catagatgctgagtattcaggaaatgcacaaagtttaaaccggacaaaagaggcatgtgaccatttcacttttgaagc |
55201803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 181 - 279
Target Start/End: Complemental strand, 55201713 - 55201614
Alignment:
| Q |
181 |
cttgattaagagagtgttcatcgataaaa-gaatctaattaagtgacaaagtgtaaacaataagctgataagaacgttcatgtagaatcacatgatgatg |
279 |
Q |
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||||||||||| |||||||||| |||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
55201713 |
cttgattaagaaagtgttcatcaataaaaagaatctaattaagtgacagagtgtaaacaatcagctgataagaacgttcatgtagaatcacatgaagatg |
55201614 |
T |
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