View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13377_low_2 (Length: 630)
Name: NF13377_low_2
Description: NF13377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13377_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 14 - 612
Target Start/End: Complemental strand, 5684925 - 5684327
Alignment:
| Q |
14 |
tcgttcactcacacgaaggatgctgaaaagccaaatacaacaaagtatcaaactgtttagcaggattatcatcctgtaatgtctctgatggttcaagtga |
113 |
Q |
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| T |
5684925 |
tcgttctctcacacgaaggatgctgaaaagccaaatacaacaaagtatcaaactgtttagcaggattatcatcctctaatgtctctgatggttcaagtga |
5684826 |
T |
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| Q |
114 |
gtatccaagggcttgtttcgcttcgagtaaatactcatcgatccataatttatcggcattgttaaggcgcgatgaaggtagacaagaacttaacaatggg |
213 |
Q |
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| T |
5684825 |
gtatccaagggcttgtttcgcttcgagtaaatactcatcgatccataatttatcggcattgttaaggcgcaatgaaggtagacaagaacttaacaatggg |
5684726 |
T |
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| Q |
214 |
aatgattttagtgaaagttgtggactgttgagaaatctttctgcgagttttttatcgtctagtgggggttttaaaatgtaacgtcttggtggtgattttg |
313 |
Q |
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| T |
5684725 |
aatgattttagtgaaagttgtggactgttgagaaatctttctgcgagttttttatcgtctagtgggggttttaaaatgtaacgtcttggtggtgattttg |
5684626 |
T |
|
| Q |
314 |
attttgggttagtgannnnnnngcgttctgctagttcttttagaagtcgttgaggattgttatttctagggaagtcttttgttgggtctattgcaactgc |
413 |
Q |
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| T |
5684625 |
attttgggttagtgatttttttgcgttctgctagttcttttagaagtcgttgaggattgttatttctagggaagtcttttgttgggtctattgcaactgc |
5684526 |
T |
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| Q |
414 |
gagaacgtgaagagggtagtttcgggatttggtgtttttgattaggatttggatggggaaaggagagaatgaggatgagaatgagaagttagttggtttt |
513 |
Q |
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| T |
5684525 |
gagaacgtgaagagggtagtttcgggatttggtgtttttgattaggatttggatggggaaaggagagaatgaggatgagaatgagaagttagttggtttt |
5684426 |
T |
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| Q |
514 |
ggggagagtgaaaaagaggatgagagttccattgttgttgtttgaaggggattgaattgtgatgggaaatgtagatagtggaaaattggagggtttgtg |
612 |
Q |
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| T |
5684425 |
ggggagagtgaaaaagaggatgagagttccattgttgttgtttgaaggggattgaattgtgatgggaaatgtagatagtggaaaattggagggtttgtg |
5684327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 39772639 - 39772691
Alignment:
| Q |
31 |
ggatgctgaaaagccaaatacaacaaagtatcaaactgtttagcaggattatc |
83 |
Q |
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| T |
39772639 |
ggatgctgaaacgccaaatacaacagcgtatcaaattgcttagcagggttatc |
39772691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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