View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13377_low_3 (Length: 435)
Name: NF13377_low_3
Description: NF13377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13377_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 38390684 - 38390281
Alignment:
| Q |
1 |
cacagatccatgaaaaaagctttcgctagtcctaccagcatctcccctgtttttcacattatcaatttgtggtgatttatcatattcatatcaatcatga |
100 |
Q |
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| T |
38390684 |
cacagatccatgaaaaaagctttcgctagtcctaccagcatctcccctgtttttcacattatcaatttgtggtgatttatcatattcatatcaatcatga |
38390585 |
T |
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| Q |
101 |
tatacttcaacatagataggattccataagtttgtatgcttctttcataggttgtatgttctttaatttccaaaa-caacatgtttcctgcggcaaatac |
199 |
Q |
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| T |
38390584 |
tatacttcaacatagataggattccataagtttgtatgcttctttcataggttgtatattctttaatttccaaaaacaacatgtttcctgcggcaaatac |
38390485 |
T |
|
| Q |
200 |
aataacagcaacaacaacaaaagtgaaaaactggaagaatgtcaggttggaaatttccgggggtagggcatcaacaagaacaagatatgcagattgaaga |
299 |
Q |
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| T |
38390484 |
aataacagcaacaacaacaaaagtgaaaaactggaagaatgtcaggttggaaatttccgggggtagggcatcaacaagaacaagatatgcagattgaaga |
38390385 |
T |
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| Q |
300 |
gtcataactgtgtggaatgcgatagaagcacatcaagatttaaaggacacatactcttcgagggacatattgtgtacccggcgtccgtgtgagcatgtgc |
399 |
Q |
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| T |
38390384 |
gtcataactgtgtgcaatgcgatagaagcacatcaagatttaaaggacacatactcttcgagggacatattgtgtacccggcgtccgtgtaagcatgtgc |
38390285 |
T |
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| Q |
400 |
ttgg |
403 |
Q |
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|||| |
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| T |
38390284 |
ttgg |
38390281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 307 - 402
Target Start/End: Complemental strand, 38390878 - 38390784
Alignment:
| Q |
307 |
ctgtgtggaatgcgatagaagcacatcaagatttaaaggacacatactcttcgagggacatattgtgtacccggcgtccgtgtgagcatgtgcttg |
402 |
Q |
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| T |
38390878 |
ctgtgtgcaatgcaatagaagcacatcatgctttaaaggaaacatactctctgagggacatattgtgtactagg-gttcatgtgagcatgtgcttg |
38390784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 39591946 - 39591990
Alignment:
| Q |
6 |
atccatgaaaaaagctttcgctagtcctaccagcatctcccctgt |
50 |
Q |
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| T |
39591946 |
atccatgaaaagagccttagctggtcctaccagcatctcccctgt |
39591990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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