View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13377_low_5 (Length: 425)
Name: NF13377_low_5
Description: NF13377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13377_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 21 - 407
Target Start/End: Complemental strand, 4870620 - 4870228
Alignment:
| Q |
21 |
cgatatgaaatgaggttatt---gttgatgggtttcggtgtgtgtcattccagttccagaccatccaaacaaatgttttaaaattagtaacataataaac |
117 |
Q |
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| T |
4870620 |
cgatatgaaatgaggttattattgttgatgggtttcggtgtgtgtcattccagttccagaccatccaaacaaatgttttaaaattagtaacataataaac |
4870521 |
T |
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| Q |
118 |
atctctataaatttaatatcaaaatattggaatacttacttatttacgattgaataagtcgatgttatcttatgggagtgttgcacaacattgaagacca |
217 |
Q |
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|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4870520 |
atctctataaatttaatatcaatatattggaatacttccttatttacgattgaataagtcgatgttatcttatgggagtgttgcacaacattgaagacca |
4870421 |
T |
|
| Q |
218 |
cacccgtgattgttgaagtagagtata---tattttgcattggaagatatatatgataggcttatttataattttattaatattggaagatatttttccg |
314 |
Q |
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||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4870420 |
cacccatgattgttgaagtagagtatatactattttgcattggaagatatatatgataggcttatttataattttattaatattggaagatatttttccg |
4870321 |
T |
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| Q |
315 |
taagctaatttactaatttaaaagtgagagtcatcacgcccatcagaacatatcttgtgaaacttccaataaaacatgcataggggaattttc |
407 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||| |
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| T |
4870320 |
taagctaatttagtaatttaaaagtgagagtcatcacgcccatcagaacatatcttgtgaaatttccaataaaccatgtataggggaattttc |
4870228 |
T |
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