View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13377_low_7 (Length: 399)

Name: NF13377_low_7
Description: NF13377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13377_low_7
NF13377_low_7
[»] chr2 (32 HSPs)
chr2 (25-232)||(4497411-4497618)
chr2 (27-216)||(4491734-4491923)
chr2 (231-317)||(6403995-6404081)
chr2 (231-317)||(15911663-15911749)
chr2 (11-231)||(4503977-4504194)
chr2 (231-317)||(38207364-38207450)
chr2 (231-317)||(44759972-44760058)
chr2 (231-310)||(17308833-17308912)
chr2 (231-317)||(17137881-17137967)
chr2 (231-317)||(30490852-30490938)
chr2 (231-317)||(18137474-18137555)
chr2 (231-317)||(13278579-13278660)
chr2 (231-317)||(7942913-7942994)
chr2 (231-305)||(1114648-1114717)
chr2 (264-317)||(1210102-1210155)
chr2 (272-317)||(38703758-38703803)
chr2 (231-283)||(45116964-45117016)
chr2 (231-277)||(38707426-38707472)
chr2 (255-306)||(5939259-5939310)
chr2 (255-306)||(24168410-24168461)
chr2 (255-306)||(31994259-31994310)
chr2 (255-306)||(34948385-34948436)
chr2 (260-306)||(45526222-45526268)
chr2 (11-54)||(4497295-4497338)
chr2 (255-306)||(5464564-5464615)
chr2 (263-306)||(16252545-16252588)
chr2 (263-306)||(16414228-16414271)
chr2 (255-306)||(16739565-16739616)
chr2 (255-306)||(18963248-18963299)
chr2 (255-306)||(34906239-34906290)
chr2 (255-306)||(41961596-41961647)
chr2 (261-306)||(21485439-21485484)
[»] chr6 (11 HSPs)
chr6 (231-317)||(16395195-16395281)
chr6 (231-317)||(31271229-31271315)
chr6 (231-317)||(303634-303720)
chr6 (231-314)||(31723046-31723129)
chr6 (231-313)||(438911-438993)
chr6 (255-306)||(13036794-13036845)
chr6 (231-306)||(31318408-31318478)
chr6 (231-317)||(9305134-9305215)
chr6 (255-303)||(12305267-12305315)
chr6 (255-306)||(29436000-29436051)
chr6 (255-303)||(34949434-34949482)
[»] chr5 (25 HSPs)
chr5 (231-317)||(27114184-27114270)
chr5 (231-317)||(8300934-8301020)
chr5 (231-317)||(38679624-38679710)
chr5 (231-317)||(3556501-3556587)
chr5 (231-317)||(8734574-8734660)
chr5 (231-317)||(13822244-13822330)
chr5 (231-317)||(18808859-18808945)
chr5 (242-317)||(12723562-12723637)
chr5 (242-317)||(12785045-12785120)
chr5 (231-317)||(8197288-8197374)
chr5 (231-317)||(16513765-16513851)
chr5 (240-317)||(37012713-37012790)
chr5 (255-317)||(37030425-37030487)
chr5 (233-317)||(26278922-26279001)
chr5 (255-303)||(15858730-15858778)
chr5 (231-315)||(25977304-25977383)
chr5 (231-314)||(2606162-2606240)
chr5 (264-306)||(9715494-9715536)
chr5 (264-305)||(37883338-37883379)
chr5 (255-306)||(1711398-1711449)
chr5 (255-306)||(6432592-6432643)
chr5 (255-306)||(24856094-24856145)
chr5 (255-306)||(31471705-31471756)
chr5 (261-306)||(23252385-23252430)
chr5 (260-306)||(32746748-32746794)
[»] chr3 (32 HSPs)
chr3 (231-317)||(39586453-39586539)
chr3 (231-317)||(149207-149292)
chr3 (231-317)||(40937097-40937183)
chr3 (231-317)||(47646795-47646881)
chr3 (231-314)||(10509396-10509479)
chr3 (231-317)||(227509-227595)
chr3 (231-317)||(26502363-26502449)
chr3 (231-315)||(36402883-36402967)
chr3 (231-317)||(41193888-41193974)
chr3 (231-305)||(41174699-41174773)
chr3 (231-317)||(47013888-47013974)
chr3 (231-317)||(31765373-31765454)
chr3 (231-306)||(49166291-49166361)
chr3 (255-306)||(2182983-2183034)
chr3 (260-304)||(26982508-26982552)
chr3 (255-306)||(8486688-8486739)
chr3 (255-306)||(21980080-21980131)
chr3 (255-306)||(22002511-22002562)
chr3 (270-317)||(39353217-39353264)
chr3 (255-306)||(49327495-49327546)
chr3 (255-306)||(53393850-53393901)
chr3 (271-317)||(32529720-32529766)
chr3 (261-306)||(10494899-10494944)
chr3 (255-306)||(9126933-9126984)
chr3 (255-306)||(9135040-9135091)
chr3 (255-306)||(18875933-18875984)
chr3 (255-306)||(21450342-21450393)
chr3 (277-306)||(12717578-12717607)
chr3 (261-306)||(33843423-33843468)
chr3 (255-317)||(6936375-6936434)
chr3 (255-303)||(44207773-44207821)
chr3 (262-306)||(48062086-48062130)
[»] chr1 (33 HSPs)
chr1 (231-316)||(33801242-33801327)
chr1 (231-316)||(44757704-44757789)
chr1 (231-317)||(22858638-22858724)
chr1 (231-317)||(29961277-29961363)
chr1 (231-317)||(41723408-41723494)
chr1 (241-317)||(44496375-44496451)
chr1 (231-317)||(3517747-3517833)
chr1 (231-317)||(37952180-37952266)
chr1 (231-317)||(42882762-42882847)
chr1 (231-317)||(14587515-14587601)
chr1 (231-305)||(48965075-48965149)
chr1 (231-317)||(12700711-12700801)
chr1 (231-317)||(41900459-41900540)
chr1 (231-317)||(27216684-27216765)
chr1 (255-317)||(41086304-41086366)
chr1 (255-317)||(41091072-41091134)
chr1 (260-317)||(49851618-49851675)
chr1 (231-315)||(11952594-11952673)
chr1 (255-314)||(38860581-38860640)
chr1 (255-317)||(23984207-23984269)
chr1 (264-305)||(12528359-12528400)
chr1 (255-306)||(10223349-10223400)
chr1 (255-306)||(12525087-12525138)
chr1 (255-306)||(18272171-18272222)
chr1 (255-306)||(18276825-18276876)
chr1 (255-306)||(22335083-22335134)
chr1 (255-306)||(39598115-39598166)
chr1 (255-306)||(3475447-3475498)
chr1 (255-306)||(5749975-5750026)
chr1 (255-306)||(22817656-22817707)
chr1 (255-304)||(21187398-21187447)
chr1 (262-307)||(41933653-41933698)
chr1 (264-317)||(52632529-52632582)
[»] chr8 (24 HSPs)
chr8 (231-317)||(39260464-39260550)
chr8 (231-317)||(40105420-40105506)
chr8 (231-317)||(8240159-8240245)
chr8 (231-317)||(32946959-32947045)
chr8 (231-317)||(35684187-35684273)
chr8 (231-317)||(42132039-42132125)
chr8 (231-317)||(39318767-39318853)
chr8 (231-317)||(32337693-32337777)
chr8 (231-315)||(586584-586663)
chr8 (231-317)||(29544284-29544365)
chr8 (231-317)||(37098221-37098302)
chr8 (231-315)||(627260-627339)
chr8 (231-306)||(31701237-31701307)
chr8 (255-317)||(13546360-13546422)
chr8 (255-317)||(13678051-13678113)
chr8 (231-317)||(43098716-43098797)
chr8 (273-317)||(11076150-11076194)
chr8 (231-306)||(20091447-20091517)
chr8 (231-317)||(23144279-23144360)
chr8 (255-306)||(42190450-42190501)
chr8 (255-304)||(23421132-23421181)
chr8 (262-306)||(21269172-21269216)
chr8 (255-306)||(11908-11959)
chr8 (261-306)||(4258893-4258938)
[»] chr7 (20 HSPs)
chr7 (231-317)||(34848046-34848132)
chr7 (231-317)||(35794357-35794443)
chr7 (231-317)||(36312253-36312339)
chr7 (231-317)||(25529278-25529363)
chr7 (235-317)||(46254750-46254832)
chr7 (231-317)||(33950810-33950896)
chr7 (231-317)||(43458067-43458153)
chr7 (231-317)||(44862897-44862982)
chr7 (231-314)||(14816826-14816904)
chr7 (231-314)||(15263822-15263900)
chr7 (231-314)||(42321306-42321384)
chr7 (255-306)||(15032723-15032774)
chr7 (255-306)||(38257614-38257665)
chr7 (255-306)||(43749373-43749424)
chr7 (260-306)||(108610-108656)
chr7 (261-306)||(1852055-1852100)
chr7 (255-305)||(29739382-29739432)
chr7 (262-304)||(37998579-37998621)
chr7 (261-306)||(1869306-1869351)
chr7 (255-306)||(35585241-35585293)
[»] chr4 (40 HSPs)
chr4 (231-317)||(31092986-31093072)
chr4 (231-317)||(40727905-40727991)
chr4 (231-317)||(45461376-45461462)
chr4 (231-312)||(43842054-43842135)
chr4 (231-315)||(51538525-51538609)
chr4 (231-317)||(16023753-16023839)
chr4 (231-317)||(35158599-35158685)
chr4 (231-317)||(38218439-38218525)
chr4 (240-317)||(55136554-55136631)
chr4 (231-317)||(30003491-30003577)
chr4 (231-317)||(45029192-45029278)
chr4 (231-317)||(52417105-52417191)
chr4 (240-317)||(45228959-45229035)
chr4 (231-315)||(33280967-33281051)
chr4 (231-311)||(56463819-56463899)
chr4 (231-317)||(9036271-9036357)
chr4 (231-317)||(1602666-1602750)
chr4 (231-317)||(45924484-45924565)
chr4 (231-317)||(49374204-49374285)
chr4 (264-317)||(28780947-28781000)
chr4 (255-317)||(4190045-4190107)
chr4 (231-317)||(6963340-6963421)
chr4 (231-317)||(28311062-28311143)
chr4 (231-317)||(38551439-38551520)
chr4 (255-317)||(16451835-16451897)
chr4 (264-317)||(168711-168764)
chr4 (264-317)||(2013904-2013957)
chr4 (255-315)||(15543013-15543073)
chr4 (231-313)||(4048018-4048096)
chr4 (255-306)||(47985861-47985912)
chr4 (255-306)||(53511427-53511478)
chr4 (261-305)||(34953746-34953790)
chr4 (255-306)||(17647095-17647146)
chr4 (255-306)||(38990832-38990883)
chr4 (255-306)||(40693162-40693213)
chr4 (277-307)||(20516592-20516622)
chr4 (261-306)||(39807459-39807504)
chr4 (253-306)||(51889009-51889062)
chr4 (255-306)||(13721248-13721300)
chr4 (261-305)||(56084024-56084068)
[»] scaffold1301 (1 HSPs)
scaffold1301 (264-317)||(1569-1622)


Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 25 - 232
Target Start/End: Original strand, 4497411 - 4497618
Alignment:
Q  25 gagattacatttcgttgaggaagttgatgagcttcctcttcacagttgttatggttatagaagtacttctgtaataaagctagtaataagcagattgtgg 124  Q
    ||||||||||||| ||||| |||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4497411 gagattacatttccttgagaaagttggtgagcttcctcttcacaattgttatggttatggaagtacttctgtaataaagctagtaataagcagattgtgg 4497510  T
Q  125 aagtggtagcacatatgaaatagagtacccaaaatttgtcaagggtaaggctctcagtttctggagatgctgagttgcttgagcattccttattaggtgt 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4497511 aagtggtagcacatatgaaatagagtacccaaaatttgtcaagggtaaggctctcagtttctggagatgctgagttgcttgagcattccttattaggtgt 4497610  T
Q  225 taaccaat 232  Q
    ||||||||    
T  4497611 taaccaat 4497618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 27 - 216
Target Start/End: Original strand, 4491734 - 4491923
Alignment:
Q  27 gattacatttcgttgaggaagttgatgagcttcctcttcacagttgttatggttatagaagtacttctgtaataaagctagtaataagcagattgtggaa 126  Q
    |||||||||||  |||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4491734 gattacatttccctgagaaagttgatgagcttgctcttcgcagttgttatggttatagaagtacttctgtaataaagctagtaataagcagattgtggaa 4491833  T
Q  127 gtggtagcacatatgaaatagagtacccaaaatttgtcaagggtaaggctctcagtttctggagatgctgagttgcttgagcattcctta 216  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||  ||||||||||||||    
T  4491834 gtggtagcacatatgaaatagagtccccaaaatttgtcaagggtaaggctctcagtttctgaagatgttgagttcattgagcattcctta 4491923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 6403995 - 6404081
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6403995 atatgaaccccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 6404081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 15911663 - 15911749
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15911663 atatgaaccccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 15911749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 4503977 - 4504194
Alignment:
Q  11 catcatcaaattcggagattacatttcgttgaggaagttgatgagcttcctcttcacagttgttatggttatagaagtacttctgtaataaagctagtaa 110  Q
    |||||||| ||||||  |||||||||| |||||||||||||   |||| ||| ||| |||  |||||||||| ||| || |||   ||||||||||||||    
T  4503977 catcatcagattcggcaattacatttccttgaggaagttga---gcttgctcatcatagtgattatggttatggaaatatttcctcaataaagctagtaa 4504073  T
Q  111 taagcagattgtggaagtggtagcacatatgaaatagagtacccaaaatttgtcaagggtaaggctctcagtttctggagatgctgagttgcttgagcat 210  Q
    || |||||| |||||||||| ||||||||||| ||| ||| || | |||||| ||||||| || ||||| ||||||||||||||||||||| ||||||||    
T  4504074 tatgcagatggtggaagtggcagcacatatgatatatagtcccaagaatttggcaagggtcagactctccgtttctggagatgctgagttggttgagcat 4504173  T
Q  211 tccttattaggtgttaaccaa 231  Q
    ||  ||  |||||||||||||    
T  4504174 tcagtagaaggtgttaaccaa 4504194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 38207364 - 38207450
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  38207364 atatgaaccccacacaagctgcaatgcattgcaattgcaggattcctatgaacggtcaacaatgaccatgacatcatcgacacccct 38207450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 44759972 - 44760058
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  44759972 atatgaaccccacacaagctgcaatgcattgcaattgcagggctcctatgaacggtcaacaatgatcatgacaccatcgacacccct 44760058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 231 - 310
Target Start/End: Original strand, 17308833 - 17308912
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcga 310  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17308833 atatgaaccccacacaagctgcaattcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcga 17308912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 17137967 - 17137881
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  17137967 atatgaatcccacacaagctgcaatgcattgcaattgcagggttcctatgaactgtcaacaatgaccatgacaccatcaacacccct 17137881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 30490938 - 30490852
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  30490938 atatgaaccccacacaagttgcaatgcattgcaattgcagtgttcctatgaacggtcaacaatgaccatggcaccatcgacacccct 30490852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 18137474 - 18137555
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| |||||||||||||||||||     |||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  18137474 atatgaaccccacacaagctgcaatgca-----attgcagggttcatatgaacggtcaacaatgaccatgacaccaccgacacccct 18137555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 13278579 - 13278660
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| ||||||||||||||||||      |||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  13278579 atatgaaccccacacaagctgcaatgct-----attgcagggttcatatgaacggtcaacaatgaccatgacaccaccgacacccct 13278660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 7942994 - 7942913
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| |||||||||||||||||||     |||||||||||| ||||||| |||||||||||||||||||||| ||||| ||||    
T  7942994 atatgaaccccacacaagctgcaatgca-----attgcagggttcatatgaacagtcaacaatgaccatgacaccaccgacaaccct 7942913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 231 - 305
Target Start/End: Original strand, 1114648 - 1114717
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacc 305  Q
    |||||||| ||||||||||||||||| |     |||||||||||| |||||||||||||||||||||||||||||    
T  1114648 atatgaaccccacacaagctgcaatgaa-----attgcagggttcatatgaacggtcaacaatgaccatgacacc 1114717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 264 - 317
Target Start/End: Complemental strand, 1210155 - 1210102
Alignment:
Q  264 attgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||||||| |||||||||||||||||||||||||||||| | ||||||||    
T  1210155 attgcagggttcatatgaacggtcaacaatgaccatgacaccaccaacacccct 1210102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 272 - 317
Target Start/End: Complemental strand, 38703803 - 38703758
Alignment:
Q  272 gttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  38703803 gttcctatgaacggtcaacaattaccatgacaccatcgacacccct 38703758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 45116964 - 45117016
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaac 283  Q
    |||| ||| |||||||||||||||||||||||||||||||||||| |||||||    
T  45116964 atattaaccccacacaagctgcaatgcattgcaattgcagggttcttatgaac 45117016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 231 - 277
Target Start/End: Complemental strand, 38707472 - 38707426
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcct 277  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||    
T  38707472 atatgaaccccacataagctgcaatgcattgcaattgcagggttcct 38707426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 5939310 - 5939259
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||||| || ||||| ||||||||||||||||||||||||    
T  5939310 tgcaatgcaattgcaggggtcgtatgagcggtcaacaatgaccatgacacca 5939259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 24168410 - 24168461
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||| | || ||||||||||||||||||||||||||||||    
T  24168410 tgcaatgcaattgcagaggtcgtatgaacggtcaacaatgaccatgacacca 24168461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 31994310 - 31994259
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||| |||||| ||||| ||||||||||||||||||||||||||||||    
T  31994310 tgcaatgctattgcatggttcatatgaacggtcaacaatgaccatgacacca 31994259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 34948385 - 34948436
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||||| || ||||| ||||||||||||||||||||||||    
T  34948385 tgcaatgcaattgcaggggtcgtatgagcggtcaacaatgaccatgacacca 34948436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 306
Target Start/End: Original strand, 45526222 - 45526268
Alignment:
Q  260 tgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    ||||||||||||| || ||||| ||||||||||||||||||||||||    
T  45526222 tgcaattgcaggggtcgtatgagcggtcaacaatgaccatgacacca 45526268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 4497295 - 4497338
Alignment:
Q  11 catcatcaaattcggagattacatttcgttgaggaagttgatga 54  Q
    |||||||| ||||||||||||| |||| ||||||||||||||||    
T  4497295 catcatcagattcggagattacgtttccttgaggaagttgatga 4497338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 5464615 - 5464564
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||||| || ||||| | ||||||||||||||||||||||    
T  5464615 tgcaatgcaattgcaggggtcgtatgagcagtcaacaatgaccatgacacca 5464564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 306
Target Start/End: Complemental strand, 16252588 - 16252545
Alignment:
Q  263 aattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    ||||||| || || ||||||||||||||||||||||||||||||    
T  16252588 aattgcaaggctcgtatgaacggtcaacaatgaccatgacacca 16252545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 306
Target Start/End: Original strand, 16414228 - 16414271
Alignment:
Q  263 aattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    ||||||| || || ||||||||||||||||||||||||||||||    
T  16414228 aattgcaagggtcgtatgaacggtcaacaatgaccatgacacca 16414271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 16739616 - 16739565
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||| | || |||||| |||||||||||||||||||||||    
T  16739616 tgcaatgcaattgcagaggtcgtatgaatggtcaacaatgaccatgacacca 16739565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 18963248 - 18963299
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||||| |  |||||| |||||||||||||||||||||||    
T  18963248 tgcaatgcaattgcaggggttgtatgaatggtcaacaatgaccatgacacca 18963299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 34906239 - 34906290
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||||| || | ||| ||||||||||||||||||||||||    
T  34906239 tgcaatgcaattgcaggggtcgtgtgagcggtcaacaatgaccatgacacca 34906290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 41961596 - 41961647
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||||| || |||||  |||||||||||||||||||||||    
T  41961596 tgcaatgcaattgcaggggtcgtatgagaggtcaacaatgaccatgacacca 41961647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 21485484 - 21485439
Alignment:
Q  261 gcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||||||||||| |  |||||| |||||||||||||||||||||||    
T  21485484 gcaattgcaggggttatatgaatggtcaacaatgaccatgacacca 21485439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 16395195 - 16395281
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16395195 atatgaaccccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 16395281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 31271229 - 31271315
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31271229 atatgaaccccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgatacccct 31271315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 303634 - 303720
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  303634 atatgaaccccgcacaagctgcaatgcattgcaattgcagagttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 303720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 231 - 314
Target Start/End: Complemental strand, 31723129 - 31723046
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacc 314  Q
    |||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  31723129 atatgaactccacacaagctgcaacgcattgcaattgtagggttcttatgaacggtcaacaatgaccatgacaccatcgacacc 31723046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 231 - 313
Target Start/End: Original strand, 438911 - 438993
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacac 313  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  438911 atataaaccccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaataatgaccatgacaccatcgacac 438993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 13036794 - 13036845
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||||| || ||||| ||||||||||||||||||||||||    
T  13036794 tgcaatgcaattgcaggggtcgtatgagcggtcaacaatgaccatgacacca 13036845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 306
Target Start/End: Original strand, 31318408 - 31318478
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||||||| ||||||||||||||||||      |||||||||||  |||||||||||||||||||| |||||||||    
T  31318408 atatgaaccccacacaagctgcaatgct-----attgcagggtttatatgaacggtcaacaatgactatgacacca 31318478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 9305215 - 9305134
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| ||||||||||||||||||      |||||| | ||| ||||||||||||||||| |||||||||||| ||| ||||||    
T  9305215 atatgaaccccacacaagctgcaatgct-----attgcaagattcatatgaacggtcaacaataaccatgacaccaccgatacccct 9305134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 303
Target Start/End: Complemental strand, 12305315 - 12305267
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgaca 303  Q
    |||| ||||||||||||| ||  ||||||||||||||||||||||||||    
T  12305315 tgcaatgcaattgcaggggtcgaatgaacggtcaacaatgaccatgaca 12305267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 29436000 - 29436051
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| |||||||| |||| || ||||| ||||||||||||||||||||||||    
T  29436000 tgcaatgcaattgtaggggtcgtatgagcggtcaacaatgaccatgacacca 29436051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 303
Target Start/End: Original strand, 34949434 - 34949482
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgaca 303  Q
    |||| ||||||||||||| || ||||| ||||||||||||| |||||||    
T  34949434 tgcaatgcaattgcaggggtcgtatgagcggtcaacaatgatcatgaca 34949482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 27114184 - 27114270
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27114184 atatgaaccccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 27114270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 8301020 - 8300934
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8301020 atataaaccccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 8300934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 38679710 - 38679624
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38679710 atatgaaccccacacaagctgcaatgcattgcaattgcaggcttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 38679624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 3556501 - 3556587
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    ||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3556501 atatgaacctcacacaagctgcaatgcattgcaattgcaaggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 3556587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 8734574 - 8734660
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8734574 atatgaaccccacacaagctgcattgcattgcaattgcatggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 8734660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 13822330 - 13822244
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13822330 atatgaaccccacacaagttgcaatgcattgcaattgcagggtttctatgaacggtcaacaatgaccatgacaccatcgacacccct 13822244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 18808859 - 18808945
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  18808859 atatgaaccccacacaagctgcaatgcattgcaattgcaaggttcctatgtacggtcaacaatgaccatgacaccatcgacacccct 18808945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 242 - 317
Target Start/End: Original strand, 12723562 - 12723637
Alignment:
Q  242 acacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12723562 acacaagttgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 12723637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 242 - 317
Target Start/End: Original strand, 12785045 - 12785120
Alignment:
Q  242 acacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12785045 acacaagttgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 12785120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 8197288 - 8197374
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| ||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  8197288 atatgaaccccacataagctgcaatgcattgcaattgcatggttcctatgaacagtcaacaatgaccatgacaccatcgacacccct 8197374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 16513851 - 16513765
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  16513851 atataaaccccacacaagctgcaatgcattgcaattgcagggttcctattaacggtcaacaatgaccatgacaccattgacacccct 16513765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 240 - 317
Target Start/End: Original strand, 37012713 - 37012790
Alignment:
Q  240 ccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37012713 ccacacaagctacaatgcattgcaattgcagggtttctatgaacggtcaacaatgaccatgacaccatcgacacccct 37012790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 255 - 317
Target Start/End: Complemental strand, 37030487 - 37030425
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||| ||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  37030487 tgcaatgctattgcagggttcatatgaacggtcaacaatgaccatgacaccaccgacacccct 37030425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 233 - 317
Target Start/End: Original strand, 26278922 - 26279001
Alignment:
Q  233 atgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||| ||||||||||||||||||| |     |||||||||| |||||| ||||||||||||||||||||||| ||||||||||    
T  26278922 atgaaccccacacaagctgcaatgcact-----tgcagggttcatatgaatggtcaacaatgaccatgacaccaccgacacccct 26279001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 255 - 303
Target Start/End: Original strand, 15858730 - 15858778
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgaca 303  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  15858730 tgcattgcaattgcatggttcctatgaacggtcaacgatgaccatgaca 15858778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 315
Target Start/End: Complemental strand, 25977383 - 25977304
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacaccc 315  Q
    |||||||| |||||||||||||||||||     |||||| ||||| ||||||||||||||||||||| ||||||||  |||||||    
T  25977383 atatgaaccccacacaagctgcaatgca-----attgcaaggttcatatgaacggtcaacaatgaccgtgacaccactgacaccc 25977304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 314
Target Start/End: Complemental strand, 2606240 - 2606162
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacc 314  Q
    |||||||| ||||||||||||||||||      |||||||||||| |||||| | ||||||||||||||||||||| |||||||    
T  2606240 atatgaaccccacacaagctgcaatgct-----attgcagggttcatatgaatgatcaacaatgaccatgacaccaccgacacc 2606162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 264 - 306
Target Start/End: Complemental strand, 9715536 - 9715494
Alignment:
Q  264 attgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  9715536 attgcagggttcatatgaacggtcaacaatgaccatgacacca 9715494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 305
Target Start/End: Original strand, 37883338 - 37883379
Alignment:
Q  264 attgcagggttcctatgaacggtcaacaatgaccatgacacc 305  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  37883338 attgcagggttcatatgaacggtcaacaatgaccatgacacc 37883379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 1711449 - 1711398
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||||| || ||||| ||||||||||||||||||||||||    
T  1711449 tgcaatgcaattgcaggggtcgtatgagcggtcaacaatgaccatgacacca 1711398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 6432643 - 6432592
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||||| || ||||| ||||||||||||||||||||||||    
T  6432643 tgcaatgcaattgcaggggtcgtatgagcggtcaacaatgaccatgacacca 6432592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 24856145 - 24856094
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||||| || ||||| ||||||||||||||||||||||||    
T  24856145 tgcaatgcaattgcaggggtcgtatgagcggtcaacaatgaccatgacacca 24856094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 31471756 - 31471705
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||||| || ||||| ||||||||||||||||||||||||    
T  31471756 tgcaatgcaattgcaggggtcgtatgagcggtcaacaatgaccatgacacca 31471705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 23252385 - 23252430
Alignment:
Q  261 gcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||||||||||| |  ||||||||||||||||||||||||||||||    
T  23252385 gcaattgcaggggttatatgaacggtcaacaatgaccatgacacca 23252430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 306
Target Start/End: Original strand, 32746748 - 32746794
Alignment:
Q  260 tgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    ||||||||||||| || ||||| | ||||||||||||||||||||||    
T  32746748 tgcaattgcaggggtcgtatgagcagtcaacaatgaccatgacacca 32746794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 39586453 - 39586539
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39586453 atatgaaccccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 39586539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 149207 - 149292
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  149207 atatgaac-ccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 149292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 40937097 - 40937183
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  40937097 atatgaaccccacacaagctgcaatgcattgcaattgcagggttccgatgaacggtcaacaatgaccatgacaccatcgacacccct 40937183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 47646795 - 47646881
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47646795 atatgaaccccacacaagctgcaatgcattgcaactgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 47646881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 231 - 314
Target Start/End: Complemental strand, 10509479 - 10509396
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacc 314  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10509479 atatgaaccccagacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacc 10509396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 227509 - 227595
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  227509 atatgaaccccacacaagctgcaatgcattgtaattgcagggttcctatgaacggtcgacaatgaccatgacaccatcgacacccct 227595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 26502449 - 26502363
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26502449 atatgaaccccgcacaagctgcaatacattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 26502363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 231 - 315
Target Start/End: Complemental strand, 36402967 - 36402883
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacaccc 315  Q
    |||||||| |||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  36402967 atatgaaccccacacaagctgtaatgtattgcaattgcacggttcctatgaacggtcaacaatgaccatgacaccatggacaccc 36402883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 41193974 - 41193888
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||| |||||||||| ||||||||||    
T  41193974 atatgaaccccacacaagctgcaatgcattgcaattacagggttcccatgaacgatcaacaatgatcatgacaccaccgacacccct 41193888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 231 - 305
Target Start/End: Original strand, 41174699 - 41174773
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacc 305  Q
    ||||||||  |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41174699 atatgaacctcacataagctacaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacc 41174773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 47013974 - 47013888
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||  |||| ||||||||| |||||||||    
T  47013974 atatgaaccccacacaagctgcaatgcatttgaattgcagggttcctatgaacggtcaacagcgaccgtgacaccatagacacccct 47013888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 31765454 - 31765373
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| |||||||||||||||||||     |||||||||||| |||||| |||||||||||||||||||||||  |||||||||    
T  31765454 atatgaaccccacacaagctgcaatgca-----attgcagggttcatatgaatggtcaacaatgaccatgacaccactgacacccct 31765373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 231 - 306
Target Start/End: Complemental strand, 49166361 - 49166291
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||||||| |||||||||||||||||||     |||||| ||||| ||||||||||||||||||||||||||||||    
T  49166361 atatgaaccccacacaagctgcaatgca-----attgcatggttcatatgaacggtcaacaatgaccatgacacca 49166291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 2182983 - 2183034
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||||| || ||||||||||||||||||||||||||||||    
T  2182983 tgcaatgcaattgcaggggtcgtatgaacggtcaacaatgaccatgacacca 2183034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 26982552 - 26982508
Alignment:
Q  260 tgcaattgcagggttcctatgaacggtcaacaatgaccatgacac 304  Q
    ||||||||||||| || ||||||||||||||||||||||||||||    
T  26982552 tgcaattgcaggggtcgtatgaacggtcaacaatgaccatgacac 26982508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 8486739 - 8486688
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||||| || ||||| ||||||||||||||||||||||||    
T  8486739 tgcaatgcaattgcaggggtcgtatgagcggtcaacaatgaccatgacacca 8486688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 21980131 - 21980080
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||||| || ||||| ||||||||||||||||||||||||    
T  21980131 tgcaatgcaattgcaggggtcgtatgagcggtcaacaatgaccatgacacca 21980080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 22002562 - 22002511
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||||| || ||||| ||||||||||||||||||||||||    
T  22002562 tgcaatgcaattgcaggggtcgtatgagcggtcaacaatgaccatgacacca 22002511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 317
Target Start/End: Original strand, 39353217 - 39353264
Alignment:
Q  270 gggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||| ||||||||||||||||||||||||||| || ||||||||||    
T  39353217 gggttcatatgaacggtcaacaatgaccatgacatcaccgacacccct 39353264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 49327546 - 49327495
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||||| || ||||| ||||||||||||||||||||||||    
T  49327546 tgcaatgcaattgcaggggtcgtatgagcggtcaacaatgaccatgacacca 49327495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 53393850 - 53393901
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| |||||||||| || || ||||||||||||||||||||||||||||||    
T  53393850 tgcaatgcaattgcatgggtcgtatgaacggtcaacaatgaccatgacacca 53393901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 317
Target Start/End: Original strand, 32529720 - 32529766
Alignment:
Q  271 ggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    ||||| |||||||||||||||||||||||||||||| | ||||||||    
T  32529720 ggttcatatgaacggtcaacaatgaccatgacaccaccaacacccct 32529766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 10494944 - 10494899
Alignment:
Q  261 gcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||||||||||| |  ||||||||||||||||||||||||||||||    
T  10494944 gcaattgcaggggttatatgaacggtcaacaatgaccatgacacca 10494899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 9126933 - 9126984
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||||| || |||||||| |||||||||||||||| ||||    
T  9126933 tgcaatgcaattgcaggggtcgtatgaacgatcaacaatgaccatgaaacca 9126984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 9135040 - 9135091
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||||| || |||||||| |||||||||||||||| ||||    
T  9135040 tgcaatgcaattgcaggggtcgtatgaacgatcaacaatgaccatgaaacca 9135091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 18875933 - 18875984
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||||| || ||||| ||||||||||||||||| ||||||    
T  18875933 tgcaatgcaattgcaggggtcgtatgagcggtcaacaatgaccattacacca 18875984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 21450393 - 21450342
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||||| ||  |||| ||||||||||||||||||||||||    
T  21450393 tgcaatgcaattgcaggggtcacatgagcggtcaacaatgaccatgacacca 21450342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 306
Target Start/End: Original strand, 12717578 - 12717607
Alignment:
Q  277 tatgaacggtcaacaatgaccatgacacca 306  Q
    ||||||||||||||||||||||||||||||    
T  12717578 tatgaacggtcaacaatgaccatgacacca 12717607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 33843423 - 33843468
Alignment:
Q  261 gcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||||||||||| |  |||||||| |||||||||||||||||||||    
T  33843423 gcaattgcaggggttatatgaacgatcaacaatgaccatgacacca 33843468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 317
Target Start/End: Original strand, 6936375 - 6936434
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||| |||||||||||||||| ||||||| ||   |||||||||||||||||  |||||||||    
T  6936375 tgcaatgcaattgcagggttcatatgaacagt---caatgaccatgacaccactgacacccct 6936434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 303
Target Start/End: Complemental strand, 44207821 - 44207773
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgaca 303  Q
    |||| ||||||||||||| || ||||| |||||||||||||| ||||||    
T  44207821 tgcaatgcaattgcaggggtcgtatgagcggtcaacaatgactatgaca 44207773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 306
Target Start/End: Original strand, 48062086 - 48062130
Alignment:
Q  262 caattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    ||||||||| | || ||||| ||||||||||||||||||||||||    
T  48062086 caattgcagaggtcgtatgagcggtcaacaatgaccatgacacca 48062130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 231 - 316
Target Start/End: Original strand, 33801242 - 33801327
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccc 316  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33801242 atatgaaccccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccc 33801327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 231 - 316
Target Start/End: Complemental strand, 44757789 - 44757704
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccc 316  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44757789 atatgaaccccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccc 44757704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 22858638 - 22858724
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22858638 atatgaaccccacacaagctgcaatgcattgcaattacagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 22858724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 29961277 - 29961363
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29961277 atatgaaccccacacaagctgcaatgcattgcaattgcagggttcctattaacggtcaacaatgaccatgacaccatcgacacccct 29961363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 41723408 - 41723494
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723408 atatgaaccccacacaagctacaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 41723494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 241 - 317
Target Start/End: Original strand, 44496375 - 44496451
Alignment:
Q  241 cacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44496375 cacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 44496451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 3517833 - 3517747
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    ||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3517833 atatgaacctcacacaagctgcaatgcattgcaattgcagggttcatatgaacggtcaacaatgaccatgacaccatcgacacccct 3517747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 37952180 - 37952266
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||    
T  37952180 atatgaaccccacacaagctgcaatgcattgcaattgcagggttcttatgaacggtcaacaatgaccatgacaacatcaacacccct 37952266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 42882847 - 42882762
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||    
T  42882847 atatgaaccccacacaagctgcaatgcattgcaattgcagggtt-ctatgaacggtcatcaatgaccataacaccatcgacacccct 42882762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 14587601 - 14587515
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| |||||||||||||||||||||||||||| |||||| |||||||||| ||||||||| |||||||||||| ||||||||    
T  14587601 atatgaaccccacacaagctgcaatgcattgcaattgtagggtttctatgaacggccaacaatgatcatgacaccatcaacacccct 14587515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 231 - 305
Target Start/End: Complemental strand, 48965149 - 48965075
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacc 305  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  48965149 atatgaaccccacacaagctgcaatgcattgcaattgcagggttcctatgaatggtcaacaatgacaatgacacc 48965075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 12700801 - 12700711
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaac----aatgaccatgacaccatcgacacccct 317  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    |||||||||||||||| ||||||||||    
T  12700801 atatgaaccccacacaagctgcaatgcattgcaattgcatggttcctatgaacggtcaacaattaatgaccatgacaccaccgacacccct 12700711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 41900540 - 41900459
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| ||||||||||||||||||      |||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  41900540 atatgaaccccacacaagctgcaatgct-----attgcagggttcatatgaacggtcaacaatgaccatgacaccaccgacacccct 41900459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 27216684 - 27216765
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| |||||||||||||||||||     |||||||||||| ||||||||||||||||| |||| ||||||| ||||||||||    
T  27216684 atatgaacgccacacaagctgcaatgca-----attgcagggttcatatgaacggtcaacaatcaccaagacaccaccgacacccct 27216765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 255 - 317
Target Start/End: Original strand, 41086304 - 41086366
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||| ||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  41086304 tgcaatgctattgcagggttcatatgaacggtcaacaatgaccatgacaccaccgacacccct 41086366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 255 - 317
Target Start/End: Original strand, 41091072 - 41091134
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||| ||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  41091072 tgcaatgctattgcagggttcatatgaacggtcaacaatgaccatgacaccaccgacacccct 41091134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 260 - 317
Target Start/End: Original strand, 49851618 - 49851675
Alignment:
Q  260 tgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||    
T  49851618 tgcaattgcagggttcatatgaacggacaacaatgaccatgacaccaccgacacccct 49851675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 231 - 315
Target Start/End: Complemental strand, 11952673 - 11952594
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacaccc 315  Q
    |||||||| ||||||||||||||||||      |||||||||||| ||||||||||||||||||||||| |||||| ||||||||    
T  11952673 atatgaaccccacacaagctgcaatgct-----attgcagggttcatatgaacggtcaacaatgaccataacaccaccgacaccc 11952594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 38860581 - 38860640
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacc 314  Q
    |||| |||||||||||| ||| |||||||||||||||||||| ||||||||| |||||||    
T  38860581 tgcaatgcaattgcaggattcatatgaacggtcaacaatgacgatgacaccaccgacacc 38860640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 255 - 317
Target Start/End: Complemental strand, 23984269 - 23984207
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||| ||| |||||| ||||  |||||||||||||||||||||||||||||| ||||||||||    
T  23984269 tgcaatgctattgcaaggtttatatgaacggtcaacaatgaccatgacaccaccgacacccct 23984207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 305
Target Start/End: Original strand, 12528359 - 12528400
Alignment:
Q  264 attgcagggttcctatgaacggtcaacaatgaccatgacacc 305  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  12528359 attgcagggttcatatgaacggtcaacaatgaccatgacacc 12528400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 10223400 - 10223349
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||||| || ||||| ||||||||||||||||||||||||    
T  10223400 tgcaatgcaattgcaggggtcgtatgagcggtcaacaatgaccatgacacca 10223349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 12525138 - 12525087
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||||| || ||||| ||||||||||||||||||||||||    
T  12525138 tgcaatgcaattgcaggggtcgtatgagcggtcaacaatgaccatgacacca 12525087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 18272171 - 18272222
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||||| || ||||| ||||||||||||||||||||||||    
T  18272171 tgcaatgcaattgcaggggtcgtatgagcggtcaacaatgaccatgacacca 18272222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 18276825 - 18276876
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||||| || ||||| ||||||||||||||||||||||||    
T  18276825 tgcaatgcaattgcaggggtcgtatgagcggtcaacaatgaccatgacacca 18276876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 22335134 - 22335083
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||||| || ||||| ||||||||||||||||||||||||    
T  22335134 tgcaatgcaattgcaggggtcgtatgagcggtcaacaatgaccatgacacca 22335083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 39598115 - 39598166
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||||| || ||||| ||||||||||||||||||||||||    
T  39598115 tgcaatgcaattgcaggggtcgtatgagcggtcaacaatgaccatgacacca 39598166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 3475498 - 3475447
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||||| || ||||| |||||||||||||| |||||||||    
T  3475498 tgcaatgcaattgcaggggtcgtatgagcggtcaacaatgacaatgacacca 3475447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 5750026 - 5749975
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||||| || ||||| | ||||||||||||||||||||||    
T  5750026 tgcaatgcaattgcaggggtcgtatgagcagtcaacaatgaccatgacacca 5749975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 22817707 - 22817656
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||||| || ||||| ||| ||||||||||||||||||||    
T  22817707 tgcaatgcaattgcaggggtcgtatgagcggacaacaatgaccatgacacca 22817656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 304
Target Start/End: Original strand, 21187398 - 21187447
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacac 304  Q
    |||| |||| |||||||| || ||||| ||||||||||||||||||||||    
T  21187398 tgcaatgcagttgcaggggtcgtatgagcggtcaacaatgaccatgacac 21187447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 307
Target Start/End: Complemental strand, 41933698 - 41933653
Alignment:
Q  262 caattgcagggttcctatgaacggtcaacaatgaccatgacaccat 307  Q
    |||||||| || | ||||||||||||| ||||||||||||||||||    
T  41933698 caattgcaaggattctatgaacggtcatcaatgaccatgacaccat 41933653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 317
Target Start/End: Complemental strand, 52632582 - 52632529
Alignment:
Q  264 attgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||||||| ||||||| | ||||||||||||| |||||  ||||||||||    
T  52632582 attgcagggttcatatgaacagacaacaatgaccataacacctccgacacccct 52632529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 8e-37; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 39260550 - 39260464
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39260550 atatgaaccccacacaagctgcaatgcattgcaattgcagggttactatgaacggtcaacaatgaccatgacaccatcgacacccct 39260464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 40105506 - 40105420
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40105506 atatgaaccccacacaaactgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 40105420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 8240245 - 8240159
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  8240245 atatgaaccccacacaagctgcaatgcattgcaattgcagggttcatatgaacggtcaacaatgatcatgacaccatcgacacccct 8240159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 32946959 - 32947045
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  32946959 atatgaaccccacacaagctgcaatgcattgcaattggagagttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 32947045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 35684273 - 35684187
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  35684273 atatgaaccccacacaagctgcaatgcattgcaattgcagagttcctatgaacggtcaacaatgaccatgacaccatcgatacccct 35684187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 42132125 - 42132039
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42132125 atatgaacccgacacaagctgcaatgcattgcaattgcagggttcatatgaacggtcaacaatgaccatgacaccatcgacacccct 42132039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 39318853 - 39318767
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||  ||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  39318853 atatgaatcccacaaaagttgcaatgcattgcaattgcatggttcctatgaacggtcaacaatgactatgacaccatcgacacccct 39318767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 32337693 - 32337777
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    ||||||||  |||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  32337693 atatgaacctcacacaagctgcaatgc--tgcaattgcagggttcatatgaacggtcaacaatgaccatgacaccaccgacacccct 32337777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 231 - 315
Target Start/End: Complemental strand, 586663 - 586584
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacaccc 315  Q
    |||||||| |||||||||||||||||||     |||||||||||| |||||||||||||||||||||||| ||||| ||||||||    
T  586663 atatgaaccccacacaagctgcaatgca-----attgcagggttcatatgaacggtcaacaatgaccatggcaccaccgacaccc 586584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 29544284 - 29544365
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||||||||||||||||||||||      |||||||||||| ||||||||||||||||||||||||| |||| | ||||||||    
T  29544284 atatgaactccacacaagctgcaatgct-----attgcagggttcatatgaacggtcaacaatgaccatgataccaccaacacccct 29544365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 37098221 - 37098302
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| |||||||||||||||||  ||   |||| ||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  37098221 atatgaaccccacacaagctgcaatg--tt---attgtagggttcatatgaacggtcaacaatgaccatgacaccaccgacacccct 37098302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 231 - 315
Target Start/End: Original strand, 627260 - 627339
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacaccc 315  Q
    |||||||| ||||||||||| |||||||     |||||||||||| |||||||||||||||||||||||| ||||| ||||||||    
T  627260 atatgaaccccacacaagcttcaatgca-----attgcagggttcatatgaacggtcaacaatgaccatggcaccaccgacaccc 627339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 231 - 306
Target Start/End: Complemental strand, 31701307 - 31701237
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||||||| ||||||||||||||||||      |||||||||||| ||||||||||||||||||||||||||||||    
T  31701307 atatgaaccccacacaagctgcaatgct-----attgcagggttcatatgaacggtcaacaatgaccatgacacca 31701237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 255 - 317
Target Start/End: Complemental strand, 13546422 - 13546360
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||| ||| |||| ||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  13546422 tgcaatgctattgaagggttcatatgaacggtcaacaatgaccatgacaccaccgacacccct 13546360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 255 - 317
Target Start/End: Original strand, 13678051 - 13678113
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||| ||| |||| ||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  13678051 tgcaatgctattgaagggttcatatgaacggtcaacaatgaccatgacaccaccgacacccct 13678113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 43098797 - 43098716
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| |||||||||||||||| |      |||||||||||| |||||||||| ||||||||||||||||||| ||||||||||    
T  43098797 atatgaaccccacacaagctgcaatact-----attgcagggttcatatgaacggtaaacaatgaccatgacaccaccgacacccct 43098716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 11076150 - 11076194
Alignment:
Q  273 ttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  11076150 ttcctatgaacggtcaacaatgatcatgacaccatcgacacccct 11076194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 306
Target Start/End: Original strand, 20091447 - 20091517
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||||||| ||||||||||| ||||||      |||||||||||| ||||||||||||||||||||||||||||||    
T  20091447 atatgaaccccacacaagctacaatgct-----attgcagggttcatatgaacggtcaacaatgaccatgacacca 20091517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 23144360 - 23144279
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| |||||||||||||||| |      |||||||||||| ||||||| |||||||||||||||||||| | ||||||||||    
T  23144360 atatgaaccccacacaagctgcaattct-----attgcagggttcatatgaacagtcaacaatgaccatgacacaaccgacacccct 23144279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 42190450 - 42190501
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||||| || ||||| ||||||||||||||||||||||||    
T  42190450 tgcaatgcaattgcaggggtcgtatgagcggtcaacaatgaccatgacacca 42190501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 304
Target Start/End: Complemental strand, 23421181 - 23421132
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacac 304  Q
    |||| ||||||||||||| || ||||| ||||||||||||||||||||||    
T  23421181 tgcaatgcaattgcaggggtcgtatgagcggtcaacaatgaccatgacac 23421132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 306
Target Start/End: Complemental strand, 21269216 - 21269172
Alignment:
Q  262 caattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    ||||||||||| |  ||||||||||||||||||||||||||||||    
T  21269216 caattgcaggggttatatgaacggtcaacaatgaccatgacacca 21269172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 11959 - 11908
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||||| || ||||| | ||||||||||||||||||||||    
T  11959 tgcaatgcaattgcaggggtcatatgagcagtcaacaatgaccatgacacca 11908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 4258938 - 4258893
Alignment:
Q  261 gcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    ||||||||| || || ||||||| ||||||||||||||||||||||    
T  4258938 gcaattgcatgggtcatatgaacagtcaacaatgaccatgacacca 4258893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 8e-37; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 34848132 - 34848046
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34848132 atatgaaccccacacaagctgcaatgcattgcaattgtagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 34848046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 35794357 - 35794443
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35794357 atatgaaccccacacaagctgcaatgcattgcaatcgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 35794443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 36312339 - 36312253
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36312339 atatgaaccccacataagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccattgacacccct 36312253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 25529363 - 25529278
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  25529363 atatgaac-ccacacaagctgcaatacattgcaattgcagggttcttatgaacggtcaacaatgaccatgacaccatcgacacccct 25529278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 235 - 317
Target Start/End: Original strand, 46254750 - 46254832
Alignment:
Q  235 gaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  46254750 gaaccccacacaagctgcaatgcattgcaattgcagggttcctatgaacgttcaacaatgaccatgacaccatcgacatccct 46254832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 33950810 - 33950896
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| ||||||||| |  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33950810 atatgaaccccacacaagttaaaatgcattgcaattgcagggttcatatgaacggtcaacaatgaccatgacaccatcgacacccct 33950896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 43458067 - 43458153
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  43458067 atatgaaccccacacaaactgcaatgcattgctattgcagggttcctatgaacggtcaacaatgaccataacaccatcaacacccct 43458153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 44862897 - 44862982
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| |||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44862897 atatgaaccccacacaaactgcaatgcattgaaattgcagggttc-tatgaacggtcaacaatgaccatgacaccatcgacacccct 44862982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 231 - 314
Target Start/End: Complemental strand, 14816904 - 14816826
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacc 314  Q
    |||||||| ||||||||||||||||||      |||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  14816904 atatgaaccccacacaagctgcaatgct-----attgcagggttcatatgaacggtcaacaatgaccatgacaccaccgacacc 14816826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 231 - 314
Target Start/End: Complemental strand, 15263900 - 15263822
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacc 314  Q
    |||||||| ||||||||||||||||||      |||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  15263900 atatgaaccccacacaagctgcaatgct-----attgcagggttcatatgaacggtcaacaatgaccatgacaccaccgacacc 15263822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 231 - 314
Target Start/End: Complemental strand, 42321384 - 42321306
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacc 314  Q
    ||||||||  ||||||||||||||     |||||||||||||||| ||||||||||||||||||||||||| |||| |||||||    
T  42321384 atatgaaccacacacaagctgcaa-----tgcaattgcagggttcatatgaacggtcaacaatgaccatgaaaccaccgacacc 42321306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 15032774 - 15032723
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||||| || ||||| ||||||||||||||||||||||||    
T  15032774 tgcaatgcaattgcaggggtcgtatgagcggtcaacaatgaccatgacacca 15032723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 38257665 - 38257614
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||||| || ||||| ||||||||||||||||||||||||    
T  38257665 tgcaatgcaattgcaggggtcgtatgagcggtcaacaatgaccatgacacca 38257614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 43749424 - 43749373
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||||| || ||||| ||||||||||||||||||||||||    
T  43749424 tgcaatgcaattgcaggggtcgtatgagcggtcaacaatgaccatgacacca 43749373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 306
Target Start/End: Original strand, 108610 - 108656
Alignment:
Q  260 tgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    ||||||||||||| || ||||| ||||||||||||||||||||||||    
T  108610 tgcaattgcaggggtcgtatgagcggtcaacaatgaccatgacacca 108656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 1852055 - 1852100
Alignment:
Q  261 gcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||||||||||| |  ||||||||||||||||||||||||||||||    
T  1852055 gcaattgcaggggttatatgaacggtcaacaatgaccatgacacca 1852100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 305
Target Start/End: Complemental strand, 29739432 - 29739382
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacc 305  Q
    |||| |||||||| |||| || ||||| |||||||||||||||||||||||    
T  29739432 tgcaatgcaattgtaggggtcgtatgagcggtcaacaatgaccatgacacc 29739382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 304
Target Start/End: Original strand, 37998579 - 37998621
Alignment:
Q  262 caattgcagggttcctatgaacggtcaacaatgaccatgacac 304  Q
    ||||||||||| || ||||| ||||||||||||||||||||||    
T  37998579 caattgcaggggtcgtatgagcggtcaacaatgaccatgacac 37998621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 1869306 - 1869351
Alignment:
Q  261 gcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||||||||||  |  ||||||||||||||||||||||||||||||    
T  1869306 gcaattgcaggagttatatgaacggtcaacaatgaccatgacacca 1869351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 35585293 - 35585241
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatga-ccatgacacca 306  Q
    |||| ||||||||||||| || ||||| ||||||||||||| |||||||||||    
T  35585293 tgcaatgcaattgcaggggtcgtatgagcggtcaacaatgacccatgacacca 35585241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 8e-37; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 31092986 - 31093072
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  31092986 atatgaaccccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcaacacccct 31093072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 40727905 - 40727991
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  40727905 atatgaaccccacacaagctgcaatgcattgcaattgcagggttcttatgaacggtcaacaatgaccatgacaccatcgacacccct 40727991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 45461376 - 45461462
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45461376 atatgaaccccacacaagctacaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 45461462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 231 - 312
Target Start/End: Complemental strand, 43842135 - 43842054
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgaca 312  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43842135 atatgaaccccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgaca 43842054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 231 - 315
Target Start/End: Original strand, 51538525 - 51538609
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacaccc 315  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  51538525 atatgaaccccacacaagctgcaatgcattgcaattgcagggttcctatgaatggtcaacaatgaccatgacaccatcgacaccc 51538609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 16023753 - 16023839
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  16023753 atatgaaccccacacaagctacaatgcattgcaattgcaaggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 16023839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 35158599 - 35158685
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  35158599 atatgaaccccacacaagctgcaatgcattgcaattgcagggttcttatgaacggtcaacaatgaccatgacaccatcgacgcccct 35158685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 38218525 - 38218439
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    ||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38218525 atatgaaccacacacaagctgcaatgcattgcaattgtagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 38218439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 240 - 317
Target Start/End: Original strand, 55136554 - 55136631
Alignment:
Q  240 ccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  55136554 ccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaataatgaccatgacaccatcgacacccct 55136631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 30003491 - 30003577
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| |||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||    
T  30003491 atatgaaccccacacaagctgcaatgcattgcaattgtagtgttcttatgaacggtcaacaatgaccatgacaccatcgacacccct 30003577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 45029278 - 45029192
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||    
T  45029278 atatgaaccccacacaagctgcaatgcattgcaattgcagggttcctataaacggtcaacaactaccatgacaccatcgacacccct 45029192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 52417191 - 52417105
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||    
T  52417191 atatgaaccccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacgataatcatgacaccatcgacacccct 52417105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 240 - 317
Target Start/End: Original strand, 45228959 - 45229035
Alignment:
Q  240 ccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  45228959 ccacacaagctgcaatg-attgcaattgcagggttcctataaacggtcaacaatgaccatgacaccatcgacacccct 45229035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 231 - 315
Target Start/End: Original strand, 33280967 - 33281051
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacaccc 315  Q
    |||| ||| |||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  33280967 atattaaccccacacaagccgcaatgcattgcaattgaagggttcctatgaacggttaacaatgaccatgacaccatcgacaccc 33281051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 231 - 311
Target Start/End: Complemental strand, 56463899 - 56463819
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgac 311  Q
    |||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  56463899 atatgaaccccacacaaactgcaatgcattgcaattgcatggttcctatgaacggtcaacaatgagcatgacaccatcgac 56463819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 9036357 - 9036271
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| |||||||||||||||||| ||||||||  ||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  9036357 atatgaaccccacacaagctgcaatgcgttgcaattttaggattcctatgaacggtcaacaatgaccatgacaccattgacacccct 9036271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 1602666 - 1602750
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| | ||||||||  ||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  1602666 atatgaaccctacacaagc--caatgcattgcaactgcagggttcctatgaacggtcagcaatgaccatgacactatcgacacccct 1602750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 45924484 - 45924565
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| ||||||||||||||||||      |||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  45924484 atatgaaccccacacaagctgcaatgct-----attgcagggttcatatgaacggtcaacaatgaccatgacaccaccgacacccct 45924565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 49374204 - 49374285
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| ||||||||||||||||||      |||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  49374204 atatgaaccccacacaagctgcaatgct-----attgcagggttcatatgaacggtcaacaatgaccatgacaccaccgacacccct 49374285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 317
Target Start/End: Complemental strand, 28781000 - 28780947
Alignment:
Q  264 attgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28781000 attgcagggttcctctgaacggtcaacaatgaccatgacaccatcgacacccct 28780947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 255 - 317
Target Start/End: Complemental strand, 4190107 - 4190045
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||| ||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  4190107 tgcaatgctattgcagggttcatatgaacggtcaacaatgaccatgacaccaccgacacccct 4190045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 6963340 - 6963421
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| ||||||||||||||||||      |||||||||||| |||||||||| |||||||||||||||||||  |||||||||    
T  6963340 atatgaaccccacacaagctgcaatgct-----attgcagggttcatatgaacggttaacaatgaccatgacaccactgacacccct 6963421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 28311143 - 28311062
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| |||||||||||||||||  ||   ||||||||| ||  ||||||||||||||||||||||||||||| ||||||||||    
T  28311143 atatgaaccccacacaagctgcaatg--tt---attgcagggctcacatgaacggtcaacaatgaccatgacaccaccgacacccct 28311062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 38551520 - 38551439
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||| |||||||||||||||||  ||   |||||||||||| ||||||||||| | |||||||||||||||| ||||||||||    
T  38551520 atatgaaccccacacaagctgcaatg--tt---attgcagggttcatatgaacggtcgagaatgaccatgacaccaccgacacccct 38551439  T

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Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 255 - 317
Target Start/End: Original strand, 16451835 - 16451897
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||| ||| |||| ||||||| ||||||||||||||||||||||||| |||| ||||||||||    
T  16451835 tgcaatgctattgtagggttcatatgaacggtcaacaatgaccatgataccaccgacacccct 16451897  T

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Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 317
Target Start/End: Complemental strand, 168764 - 168711
Alignment:
Q  264 attgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||||||| |||||||||||||||||||||||||| ||| | ||||||||    
T  168764 attgcagggttcatatgaacggtcaacaatgaccatgaccccaccaacacccct 168711  T

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Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 317
Target Start/End: Complemental strand, 2013957 - 2013904
Alignment:
Q  264 attgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    ||||||| |||| |||||| ||||||||||||||||||||||| ||||||||||    
T  2013957 attgcagagttcatatgaatggtcaacaatgaccatgacaccaccgacacccct 2013904  T

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Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 255 - 315
Target Start/End: Complemental strand, 15543073 - 15543013
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacaccc 315  Q
    |||| |||||||  ||||||| |||||||||||||||||||||||||||| | ||||||||    
T  15543073 tgcaatgcaattctagggttcatatgaacggtcaacaatgaccatgacacaaccgacaccc 15543013  T

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Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 313
Target Start/End: Original strand, 4048018 - 4048096
Alignment:
Q  231 atatgaactccacacaagctgcaatgcattgcaattgcagggttcctatgaa-cggtcaacaatgaccatgacaccatcgacac 313  Q
    |||||||| |||||||||||||||||||     |||||||||||| ||| || | |||||||||||||||||||||| ||||||    
T  4048018 atatgaaccccacacaagctgcaatgca-----attgcagggttcatataaaacagtcaacaatgaccatgacaccaccgacac 4048096  T

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Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 47985912 - 47985861
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||||| || ||||| ||||||||||||||||||||||||    
T  47985912 tgcaatgcaattgcaggggtcgtatgagcggtcaacaatgaccatgacacca 47985861  T

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Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 53511427 - 53511478
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||||| || ||||| ||||||||||||||||||||||||    
T  53511427 tgcaatgcaattgcaggggtcgtatgagcggtcaacaatgaccatgacacca 53511478  T

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Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 34953790 - 34953746
Alignment:
Q  261 gcaattgcagggttcctatgaacggtcaacaatgaccatgacacc 305  Q
    |||||||||||| |  |||||||||||||||||||||||||||||    
T  34953790 gcaattgcagggattatatgaacggtcaacaatgaccatgacacc 34953746  T

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Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 17647095 - 17647146
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||||| |  ||||| ||||||||||||||||||||||||    
T  17647095 tgcaatgcaattgcaggggtagtatgagcggtcaacaatgaccatgacacca 17647146  T

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Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 38990883 - 38990832
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| |||||||||| || || ||||| ||||||||||||||||||||||||    
T  38990883 tgcaatgcaattgcaagggtcgtatgagcggtcaacaatgaccatgacacca 38990832  T

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Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 40693213 - 40693162
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||| ||||||||||| | || ||||| ||||||||||||||||||||||||    
T  40693213 tgcaatgcaattgcagaggtcgtatgagcggtcaacaatgaccatgacacca 40693162  T

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Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 307
Target Start/End: Original strand, 20516592 - 20516622
Alignment:
Q  277 tatgaacggtcaacaatgaccatgacaccat 307  Q
    |||||||||||||||||||||||||||||||    
T  20516592 tatgaacggtcaacaatgaccatgacaccat 20516622  T

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Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 39807504 - 39807459
Alignment:
Q  261 gcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||||||||||| |  ||||||||||||||||||| ||||||||||    
T  39807504 gcaattgcaggggttatatgaacggtcaacaatgatcatgacacca 39807459  T

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Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 51889009 - 51889062
Alignment:
Q  253 aatgcattgcaattgcagggttcctatgaacggtcaacaatgaccatgacacca 306  Q
    |||||| ||||||||||||| || ||| | |||||||||||||| |||||||||    
T  51889009 aatgcaatgcaattgcaggggtcgtataagcggtcaacaatgactatgacacca 51889062  T

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Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 13721248 - 13721300
Alignment:
Q  255 tgcattgcaattgcagggttcctatgaacggtcaac-aatgaccatgacacca 306  Q
    |||| ||||||||||||| || ||||| |||||||| ||||||||||||||||    
T  13721248 tgcaatgcaattgcaggggtcgtatgagcggtcaacaaatgaccatgacacca 13721300  T

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Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 305
Target Start/End: Original strand, 56084024 - 56084068
Alignment:
Q  261 gcaattgcagggttcctatgaacggtcaacaatgaccatgacacc 305  Q
    |||||||||||| |  ||||||||||| |||||||||||||||||    
T  56084024 gcaattgcagggattttatgaacggtcgacaatgaccatgacacc 56084068  T

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Target: scaffold1301 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1301
Description:

Target: scaffold1301; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 317
Target Start/End: Original strand, 1569 - 1622
Alignment:
Q  264 attgcagggttcctatgaacggtcaacaatgaccatgacaccatcgacacccct 317  Q
    |||||||||||| |||||| |||||||||||||||| |||||| ||||||||||    
T  1569 attgcagggttcatatgaatggtcaacaatgaccataacaccaccgacacccct 1622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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