View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13377_low_8 (Length: 359)
Name: NF13377_low_8
Description: NF13377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13377_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 13 - 340
Target Start/End: Original strand, 51008915 - 51009242
Alignment:
| Q |
13 |
tcatcatgcaaaacattactgaaagattaagacctcttgttggtttgaatggctgggattactgtgtctactggaaattaagtgaagatcaaaggttata |
112 |
Q |
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| T |
51008915 |
tcatcatgcaaaacattactgaaagattaagacctcttgttggtttgaatggctgggattactgtgtctactggaaattaagtgaagatcaaaggttata |
51009014 |
T |
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| Q |
113 |
acttatatacataacattacattaattgtgatgctaatttgtcaaattaattgtgatgctaatttgttgatttatatgtaggtatcttgaatggttggga |
212 |
Q |
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| T |
51009015 |
acttatatacattacattacattaattgtgatgctaatttgtcaaattaattgtgatgctaatttgttgatttatatgtaggtatcttgaatggttggga |
51009114 |
T |
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| Q |
213 |
tgttgttgtggtgggagtgaaagcaaccaaaatggtggagaagaacatcttttccctgtctcttcatgtagggatacaatgttttcacacccaagaacaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51009115 |
tgttgttgtggtgggagtgaaagcaaccaaaatggtggagaagaacatcttttccctgtctcttcatgtagggatacaatgttttcacacccaagaacaa |
51009214 |
T |
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| Q |
313 |
actcttgtgatcttctttcccaactttc |
340 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
51009215 |
actcttgtgatcttctttcccaactttc |
51009242 |
T |
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