View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13377_low_9 (Length: 358)

Name: NF13377_low_9
Description: NF13377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13377_low_9
NF13377_low_9
[»] chr7 (1 HSPs)
chr7 (205-343)||(32059048-32059186)
[»] chr4 (2 HSPs)
chr4 (188-239)||(29236552-29236603)
chr4 (131-197)||(39079068-39079138)
[»] chr8 (1 HSPs)
chr8 (188-310)||(9779847-9779974)
[»] chr2 (3 HSPs)
chr2 (200-280)||(11116364-11116445)
chr2 (185-248)||(32188351-32188414)
chr2 (188-281)||(15954280-15954375)
[»] chr5 (2 HSPs)
chr5 (198-239)||(3745072-3745113)
chr5 (209-249)||(15521092-15521132)
[»] chr1 (1 HSPs)
chr1 (188-249)||(27232343-27232404)
[»] chr6 (1 HSPs)
chr6 (207-239)||(10121242-10121274)
[»] chr3 (1 HSPs)
chr3 (243-306)||(33634121-33634185)


Alignment Details
Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 205 - 343
Target Start/End: Complemental strand, 32059186 - 32059048
Alignment:
Q  205 tcatatttagtgacggattttatccgtaggtacaataattttttctcaaactttgagacccctttaagtttgaggcttgtgcaaaggacattgttgcact 304  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||    
T  32059186 tcatatatagtgacggattttatccgtaggtacaataattttttctcaaattttgagacccctttaagtttcaggcctgtgcaaaggacattgttgcact 32059087  T
Q  305 tgcacagggctggcgactttatgcaattggagtgcatat 343  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  32059086 tgcacagggctggcaactttatgcaattggagtgcatat 32059048  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 29236603 - 29236552
Alignment:
Q  188 ttttacctatggaaaaatcatatttagtgacggattttatccgtaggtacaa 239  Q
    ||||||||| |||||||| | ||||||||||||||||| |||||||||||||    
T  29236603 ttttacctacggaaaaatgacatttagtgacggattttgtccgtaggtacaa 29236552  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 39079068 - 39079138
Alignment:
Q  131 cacttatagtgactgacaactaagttgta----aatatatgaacaatggttccaatataatttttacctat 197  Q
    ||||||| |||||  ||||||||||||||    ||||||||||||||||||| ||||| ||||||||||||    
T  39079068 cacttatggtgacacacaactaagttgtagttaaatatatgaacaatggttcaaatatgatttttacctat 39079138  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 310
Target Start/End: Original strand, 9779847 - 9779974
Alignment:
Q  188 ttttacctatggaaaaatcatatttagtgacggattttatccgtaggtacaataatttttt----ctcaaactttgagacccctttaagtttgagg-ctt 282  Q
    |||||| ||||| ||||| ||||||| ||||||||||| ||||||||| ||||  ||||||    ||| || ||||||  ||||||||| |||||| |||    
T  9779847 ttttacttatgggaaaatgatatttaatgacggattttgtccgtaggttcaattttttttttttcctccaaatttgagggccctttaagcttgaggtctt 9779946  T
Q  283 gtgcaaaggacattgttgcacttgcaca 310  Q
    |||| |||||  ||| ||||||||||||    
T  9779947 gtgccaaggaacttgatgcacttgcaca 9779974  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 280
Target Start/End: Complemental strand, 11116445 - 11116364
Alignment:
Q  200 aaaaatcatatttagtgacggattttatccgtaggtacaataattttttctcaa-actttgagacccctttaagtttgaggc 280  Q
    |||||| | |||||||||||||||||||||||||||||| |  |||||||| || | |||||||| ||| ||||| ||||||    
T  11116445 aaaaatgacatttagtgacggattttatccgtaggtacattttttttttctaaacattttgagactcctctaagtgtgaggc 11116364  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 248
Target Start/End: Complemental strand, 32188414 - 32188351
Alignment:
Q  185 aatttttacctatggaaaaatcatatttagtgacggattttatccgtaggtacaataatttttt 248  Q
    |||||||||||| ||||| || |||||||||| | |||||| ||| ||||||||||| ||||||    
T  32188414 aatttttacctacggaaacatgatatttagtggcagattttgtccttaggtacaatattttttt 32188351  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 281
Target Start/End: Complemental strand, 15954375 - 15954280
Alignment:
Q  188 ttttacctatggaaaaatcatatttagtgacggattttatccgtaggtacaa--taattttttctcaaactttgagacccctttaagtttgaggct 281  Q
    |||||||||  ||||||||  ||||||||||  ||| | |||||||||||||  |  |||||| ||||| ||||||  ||||||||||||||||||    
T  15954375 ttttacctacagaaaaatcgcatttagtgacatattatgtccgtaggtacaaacttcttttttttcaaattttgagggccctttaagtttgaggct 15954280  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 3745072 - 3745113
Alignment:
Q  198 ggaaaaatcatatttagtgacggattttatccgtaggtacaa 239  Q
    |||||||| |||||||||||| |||||||||||||| |||||    
T  3745072 ggaaaaatgatatttagtgacagattttatccgtagttacaa 3745113  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 15521132 - 15521092
Alignment:
Q  209 atttagtgacggattttatccgtaggtacaataattttttc 249  Q
    ||||||||||||||||| |||||||||||||  ||||||||    
T  15521132 atttagtgacggattttgtccgtaggtacaagtattttttc 15521092  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 27232343 - 27232404
Alignment:
Q  188 ttttacctatggaaaaatcatatttagtgacggattttatccgtaggtacaataattttttc 249  Q
    ||||||||| |||||||  | ||||||||||||| |||  |||||||||||||| |||||||    
T  27232343 ttttacctacggaaaaaatacatttagtgacggaatttggccgtaggtacaatatttttttc 27232404  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 10121242 - 10121274
Alignment:
Q  207 atatttagtgacggattttatccgtaggtacaa 239  Q
    |||||||| ||||||||||||||||||||||||    
T  10121242 atatttagcgacggattttatccgtaggtacaa 10121274  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 33634121 - 33634185
Alignment:
Q  243 ttttttctcaaactttgagacccctttaagtttgagg-cttgtgcaaaggacattgttgcacttg 306  Q
    |||||| ||||| |||||||||||| | ||||||||| ||||| | |||||| ||||||||||||    
T  33634121 ttttttttcaaattttgagacccctcttagtttgaggccttgtaccaaggaccttgttgcacttg 33634185  T

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