View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13378_high_2 (Length: 710)

Name: NF13378_high_2
Description: NF13378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13378_high_2
NF13378_high_2
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-700)||(442010-442710)


Alignment Details
Target: scaffold0002 (Bit Score: 601; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 1 - 700
Target Start/End: Original strand, 442010 - 442710
Alignment:
Q  1 tacacatggcctcatcgtgcccatggtcttgtgtggcggacaatcagattgttccgttgaagcctccacaataatcacaattgttttcacaggttttctc 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  442010 tacacatggcctcattgtgcccatggtcttgtgtggcggacaatcagattgttccgttgaagcctccacaataatcacaattgttttcacagattctctc 442109  T
Q  101 ttttacatcaattgctatttctgatcccctaccactaccagcaatcaaatctgattgttatcttcactcacatttcattaaggtttcactgatttttgct 200  Q
    ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  442110 ttcaacatcaattgctatttctgatcccctaccactaccagcaatcaaatctgattgttatcttcactcacatttcattaaggtttcactgatttttgct 442209  T
Q  201 t-attggtttgttcattttttgctcatatttcacctatctgctatctccttccctatttctttaccactgcaaaagcatcgtgaatcctcatcatcgctc 299  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||    
T  442210 ttattggtttgttcattttttgctcatatttcacctatctgctatctccttccctatttctttaccactgcaaaagcatcgtgaatcctcatcgtgcctc 442309  T
Q  300 gcgtttgttgataattcctttttgaagtttgtatatcaattttatacaaaatcgatgttaaccgtcttagaggttgttataacacataagtcttattagc 399  Q
    ||  ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||     
T  442310 gctgttgttgataattcctttttgaagtttgtatatcaattttatacgaaattgatgttaaccgtctcagaggttgttataacacataagtcttattagg 442409  T
Q  400 gtttcagtggttcttaacttgtatttgttgattttaatgagtatctagggtttctaatagtagttactctttattgaatttctataacctttcaattctt 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  442410 gtttcagtggttcttaacttgtatttgttgattttaatgagtatctagggtttctaatagtagttactctttattgaatttctataacctttcaattctt 442509  T
Q  500 catcccaaccatagtgattctaattctatccatttagcatgaactttgtatattttgataataacttcctacctattactttttgttaaaatgaaactgt 599  Q
    |||| ||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  442510 catcacaaccatagcgattctaattctatccatttagcattaactgtgtatattttgataataactttctacctattactttttattaaaatgaaactgt 442609  T
Q  600 tgacattagattgatatttaaatggaccttgacattgaaattgttgagtttgtatagattttcatcagggtgattggtttgtacctgatcacaggttctg 699  Q
    | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  442610 tcacattagattgatatttaaatggactttgacattgaaattgttgagtttgtatagattttcatcagggtgattggtttgtacctgatcacagggtctg 442709  T
Q  700 c 700  Q
    |    
T  442710 c 442710  T

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