View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13378_low_12 (Length: 224)
Name: NF13378_low_12
Description: NF13378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13378_low_12 |
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| [»] scaffold0289 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 31184362 - 31184553
Alignment:
| Q |
14 |
acatcatcaaccttcaaggatattgccaacattctaagttctcatttttggtttacaagttcatggaaggtggaagcttagatcaaatactaaacaatga |
113 |
Q |
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| T |
31184362 |
acatcatcaaccttcaaggatattgccaacattctaagttctcatttttggtttacaagttcatggaaggtggaagcttagatcaaataataaacaatga |
31184461 |
T |
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| Q |
114 |
aaaacaagccattgcatttgattgggaaaagagggtgaatgttgttaaaggtgttgccaatgctttgtcctacttgcatcacgattgctcac |
205 |
Q |
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| T |
31184462 |
aaaacaagccattgcatttgattgggaaaagagggtgaatgttgttaaaggtgtcgccaatgctttgtcctacttgcatcacgattgctcac |
31184553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 31103284 - 31103473
Alignment:
| Q |
16 |
atcatcaaccttcaaggatattgccaacattctaagttctcatttttggtttacaagttcatggaaggtggaagcttagatcaaatactaaacaatgaaa |
115 |
Q |
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| T |
31103284 |
atcataaagcttcatggattttgctcacattctaagttctcatttttagtttacaagttcatggaaggtggaagcttagatcaaatactaaacaatgaaa |
31103383 |
T |
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| Q |
116 |
aacaagccattgcatttgattgggaaaagagggtgaatgttgttaaaggtgttgccaatgctttgtcctacttgcatcacgattgctcac |
205 |
Q |
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| T |
31103384 |
aacaagccattgcatttgattgggaaaagagggtgaatgttgttaaaggtgtcgccaatgctttgtcctacttgcatcatgattgctcac |
31103473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 31058838 - 31059027
Alignment:
| Q |
14 |
acatcatcaaccttcaaggatattgccaacattctaagttctcatttttggtttacaagttcatggaaggtggaagcttagatcaaatactaaacaatga |
113 |
Q |
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| T |
31058838 |
acatcataaaacttcatggattttgctcacattctaaattctcgtttttggtttacaagttcttggaaggtggaagcttagatcaaatactaaacaatga |
31058937 |
T |
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| Q |
114 |
aaaacaagccattgcatttgattgggaaaagagggtgaatgttgttaaaggtgttgccaatgctttgtcctacttgcatcacgattgctc |
203 |
Q |
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| T |
31058938 |
cacacaagccgttgcatttgattgggaaaagagggtgaatgttgttaaaggtgtggccaatgctttgtcctacttgcatcatgattgctc |
31059027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 14 - 200
Target Start/End: Original strand, 31140641 - 31140827
Alignment:
| Q |
14 |
acatcatcaaccttcaaggatattgccaacattctaagttctcatttttggtttacaagttcatggaaggtggaagcttagatcaaatactaaacaatga |
113 |
Q |
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| T |
31140641 |
acatcataaagcttcatggattttgctcacattctaaattctcatttttggtttacaagttcttggaaggaggaagcttaggtcaaatgctaaacagtga |
31140740 |
T |
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| Q |
114 |
aaaacaagccattgcatttgattgggaaaagagggtgaatgttgttaaaggtgttgccaatgctttgtcctacttgcatcacgattg |
200 |
Q |
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| T |
31140741 |
tacacaagccactgcatttgattgggaaaagagggtgaatgttgttaaaggtgtggccaatgctttgtcctacttgcatcatgattg |
31140827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 86 - 200
Target Start/End: Original strand, 31159545 - 31159659
Alignment:
| Q |
86 |
gaagcttagatcaaatactaaacaatgaaaaacaagccattgcatttgattgggaaaagagggtgaatgttgttaaaggtgttgccaatgctttgtccta |
185 |
Q |
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| T |
31159545 |
gaagcttaggtcaaatgctaaacagtgatacacaagccactgcatttgattgggaaaagagggtgaatgttgttaaaggtgtggccaatgctttgtccta |
31159644 |
T |
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| Q |
186 |
cttgcatcacgattg |
200 |
Q |
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| T |
31159645 |
cttgcatcatgattg |
31159659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 31 - 194
Target Start/End: Original strand, 31216089 - 31216252
Alignment:
| Q |
31 |
ggatattgccaacattctaagttctcatttttggtttacaagttcatggaaggtggaagcttaga-tcaaatactaaacaatgaaaaacaagccattgca |
129 |
Q |
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| T |
31216089 |
ggatattgccgacattcaagattctcatttttggtttataagttcttggaaggtggaa-ctttgactcaaatgttaaacaatgacacacaagccattgca |
31216187 |
T |
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| Q |
130 |
tttgattgggaaaagagggtgaatgttgttaaaggtgttgccaatgctttgtcctacttgcatca |
194 |
Q |
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| T |
31216188 |
tttgattgggaaaagagggtgaatattgttagaggtgtggctgatgctttgtcctacatgcatca |
31216252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 103 - 200
Target Start/End: Original strand, 31241665 - 31241762
Alignment:
| Q |
103 |
ctaaacaatgaaaaacaagccattgcatttgattgggaaaagagggtgaatgttgttaaaggtgttgccaatgctttgtcctacttgcatcacgattg |
200 |
Q |
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| T |
31241665 |
ctaaacagtgatacacaagccactgcatttgattgggaaaagagggtgaatgttgttaaaggtgtggccaatgctttgtcctacttgcatcatgattg |
31241762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 203
Target Start/End: Original strand, 14606660 - 14606744
Alignment:
| Q |
119 |
aagccattgcatttgattgggaaaagagggtgaatgttgttaaaggtgttgccaatgctttgtcctacttgcatcacgattgctc |
203 |
Q |
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|||| ||||||||||||||| | |||||||||||||| |||||| ||| ||||||||||| | |||| ||||||| |||||||| |
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| T |
14606660 |
aagcaattgcatttgattggaataagagggtgaatgtcattaaagatgtagccaatgctttatgctacatgcatcatgattgctc |
14606744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 203
Target Start/End: Original strand, 16025837 - 16025921
Alignment:
| Q |
119 |
aagccattgcatttgattgggaaaagagggtgaatgttgttaaaggtgttgccaatgctttgtcctacttgcatcacgattgctc |
203 |
Q |
| |
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|||| ||||||||||||||| | |||||||||||||| |||||| ||| ||||||||||| | |||| ||||||| |||||||| |
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| T |
16025837 |
aagcaattgcatttgattggaataagagggtgaatgtcattaaagatgtagccaatgctttatgctacatgcatcatgattgctc |
16025921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 15664598 - 15664554
Alignment:
| Q |
119 |
aagccattgcatttgattgggaaaagagggtgaatgttgttaaag |
163 |
Q |
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| T |
15664598 |
aagcaattgcatttggttggaaaaagagggtgaatgttattaaag |
15664554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0289
Description:
Target: scaffold0289; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 4924 - 4880
Alignment:
| Q |
119 |
aagccattgcatttgattgggaaaagagggtgaatgttgttaaag |
163 |
Q |
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|||| |||||||||| |||| ||||||||||||||||| |||||| |
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| T |
4924 |
aagcaattgcatttggttggaaaaagagggtgaatgttattaaag |
4880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 13757 - 13713
Alignment:
| Q |
119 |
aagccattgcatttgattgggaaaagagggtgaatgttgttaaag |
163 |
Q |
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|||| |||||||||| |||| ||||||||||||||||| |||||| |
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| T |
13757 |
aagcaattgcatttggttggaaaaagagggtgaatgttattaaag |
13713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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