View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13378_low_13 (Length: 207)
Name: NF13378_low_13
Description: NF13378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13378_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 44343628 - 44343807
Alignment:
| Q |
19 |
atactttcaaacatgttcctaatcctcgatcttaggcctactctgattcttgtag---attggggacagacatccgaatatatattaggaatctgcctgc |
115 |
Q |
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| T |
44343628 |
atactttcaaacatgttcctaatcctc----ttaggcctactcggattcttgtagtagattggggacagacatccgaatatatattaggaatctgcgtgc |
44343723 |
T |
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| Q |
116 |
tgtcggtgtataagttggtctcatcaacgatctaactatccttaacactccctctctcacactatcttcatcactgtttcttct |
199 |
Q |
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| T |
44343724 |
tgtctgtgtataagttggtctcatcaacgatctaactatccttaacactccctctctcacactatcttcatcactgtttcttct |
44343807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 25865345 - 25865387
Alignment:
| Q |
159 |
aacactcc-ctctctcacactatcttcatcactgtttcttctc |
200 |
Q |
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|||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
25865345 |
aacactcctctctctcacacaatcttcatcactgtttcttctc |
25865387 |
T |
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