View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13378_low_3 (Length: 473)
Name: NF13378_low_3
Description: NF13378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13378_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 15724026 - 15724254
Alignment:
| Q |
1 |
cccaacaagggaggcaagtccattacagaccacctacgttggcaaagagttgtggttcagacttcagacaataaggcgctcagagccaagtcgggccatc |
100 |
Q |
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| T |
15724026 |
cccaacaagggaggcaagtccattacagaccacctacgttggcaaagagttgtggttcagacttcagacaataaggcgctcagagccaagatgggccatc |
15724125 |
T |
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| Q |
101 |
aaaacgatcgaacaatcgtttggcctttgcgctgagaggggcacaaccagttttgcttacatgacatgctcaacaatctatagtagagtaccctcacggc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15724126 |
aaaacgatcgaacaatcgtttggcctttgcgctgagaggggcacaaccagtttttcttacatgacatgctcaacaatctatagtagagtaccctcacgga |
15724225 |
T |
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| Q |
201 |
aaaaacaggtacacattcttatttcgaga |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
15724226 |
aaaaacaggtacacattcttatttcgaga |
15724254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 227 - 456
Target Start/End: Original strand, 15724431 - 15724663
Alignment:
| Q |
227 |
agatcactatttattcatagttttctacaatctaaaccttaaaaggaatccaaattaacaagtcaaatatgaaatattacctggatttggcacaggagaa |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
15724431 |
agatcactatttattcatagttttctacaatctaaaccttgaaaggaatccaaattaccaagtcaaatatgaaatattacctggatttggcacaggagaa |
15724530 |
T |
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| Q |
327 |
---gatcctgtattctcagctaactgatagaacatttgatcatcaaatctaatcccacaacttggagctacaagagcccatgttaccttagtcccacaac |
423 |
Q |
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| T |
15724531 |
gaagatcctgtattctcagttaactgatagaacaattgatcatcaaatctaatcccacaacttggagctacaagagcccatgttaccttagtcccacaac |
15724630 |
T |
|
| Q |
424 |
acagacgaattttgtcgaacaatgtctccaaac |
456 |
Q |
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| T |
15724631 |
acagatgaattttgtcgaacaatgtctccaaac |
15724663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 425
Target Start/End: Original strand, 15705669 - 15705750
Alignment:
| Q |
344 |
taactgatagaacatttgatcatcaaatctaatcccacaacttggagctacaagagcccatgttaccttagtcccacaacac |
425 |
Q |
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||||||| |||| ||||||||||||| | ||||||||||||||| |||||| |||||| ||||| |||||||||||| |
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| T |
15705669 |
taactgaaggaacttttgatcatcaaacttgatcccacaacttggaactacaacttcccatgcaacctttgtcccacaacac |
15705750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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