View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13378_low_4 (Length: 378)
Name: NF13378_low_4
Description: NF13378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13378_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 10 - 342
Target Start/End: Original strand, 18640118 - 18640450
Alignment:
| Q |
10 |
aaaagaacttacaccagtgatgacgcaaacgggcttattaggaaaagtggaaggtgaagaccttgggtaggatacgattttgtgagaaaagagcgaatcc |
109 |
Q |
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| T |
18640118 |
aaaagaacttacaccggtgatgacgcaaatgggcttattaggaaaagtggaaggtgaagaccttgggtaggatacgattttgtgagaaaagagcgaatcc |
18640217 |
T |
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| Q |
110 |
ttaaacaattggtaatgagaaaatgcaacagaaaaggtccaaagcaacgccattctcaagaattgaatcgagcagaggaaatagatagaacgtaataaat |
209 |
Q |
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| T |
18640218 |
ttaaacaattggtaatgagaaaatgcaacagaaaaggtccaaagcaacgccattctcaagaattgaatcgagcagaggaaatagatagaacgtaataaat |
18640317 |
T |
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| Q |
210 |
cctttatcaaattaatcattcccactgtgtgagaaagatagaatcagttggttgttaatactcgggttgggttcatgatggcaagttagttaagggaaaa |
309 |
Q |
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| T |
18640318 |
cctttatcaaattaatcattcccactgtgtgagaaagatagaatcagttggttgttaatactcaggttgggttcatgatggcaagttagttaagggaaaa |
18640417 |
T |
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| Q |
310 |
agaagaaggtaaatatgacactttgaatgcttc |
342 |
Q |
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| T |
18640418 |
agaagaaggtaaatatgacactttgaatgcttc |
18640450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 10 - 342
Target Start/End: Complemental strand, 1837311 - 1836979
Alignment:
| Q |
10 |
aaaagaacttacaccagtgatgacgcaaacgggcttattaggaaaagtggaaggtgaagaccttgggtaggatacgattttgtgagaaaagagcgaatcc |
109 |
Q |
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| T |
1837311 |
aaaagaacttacaccggtgatgacgcaaacgggcttattaggaaaagtggaaggtgaagaccttgggtaggatacgattttgtgagaaaagagcgaatcc |
1837212 |
T |
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| Q |
110 |
ttaaacaattggtaatgagaaaatgcaacagaaaaggtccaaagcaacgccattctcaagaattgaatcgagcagaggaaatagatagaacgtaataaat |
209 |
Q |
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| T |
1837211 |
ttaaacaattggtaatgagaaaatgcaacagaaaaggtccaaagcaacgccattctcaagaattgaatcgagcataggaaatagatagaccgtaataaat |
1837112 |
T |
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| Q |
210 |
cctttatcaaattaatcattcccactgtgtgagaaagatagaatcagttggttgttaatactcgggttgggttcatgatggcaagttagttaagggaaaa |
309 |
Q |
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| T |
1837111 |
cctttatcaaattaatcattcccactgtgtgagaaagatagaatcagttggttgttaatactcaggttgggttcatgatggcaagttagttaagggaaaa |
1837012 |
T |
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| Q |
310 |
agaagaaggtaaatatgacactttgaatgcttc |
342 |
Q |
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| T |
1837011 |
agaagaaggtaaatatgacactttgaatgcttc |
1836979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 10 - 342
Target Start/End: Original strand, 41384627 - 41384959
Alignment:
| Q |
10 |
aaaagaacttacaccagtgatgacgcaaacgggcttattaggaaaagtggaaggtgaagaccttgggtaggatacgattttgtgagaaaagagcgaatcc |
109 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41384627 |
aaaagaacttacaccggtgatgacgcaaacgggcttattaggataagtggaaggtgaagaccttgggtaggatacgattttgtgagaaaagagcgaatcc |
41384726 |
T |
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| Q |
110 |
ttaaacaattggtaatgagaaaatgcaacagaaaaggtccaaagcaacgccattctcaagaattgaatcgagcagaggaaatagatagaacgtaataaat |
209 |
Q |
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| T |
41384727 |
ttaaacaattggtaattagaaaatgcaaccgaaaaagtccatagcaacgtcatt--------ttgaatcgagcataggaaatagagagactgtaataaat |
41384818 |
T |
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| Q |
210 |
cctttatcaaattaatcattccca----------ctgtgtgagaaagatagaatca--gttggttgttaatactcgggttgggttcatgatggcaagtta |
297 |
Q |
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|||||||||||||||||||||||| ||||||||| ||| | ||| | |||||| |||||| || ||||||||||||||||| |||| | |
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| T |
41384819 |
cctttatcaaattaatcattcccattttgtttgtgtgtgtgagagagaaataatgaattttggttcttaatattcaggttgggttcatgatgg-aagtca |
41384917 |
T |
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| Q |
298 |
gttaagggaaaaagaagaaggtaaatatgacactttgaatgcttc |
342 |
Q |
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| T |
41384918 |
gttaaggg---aagaagaaggaaaatatgacactttgaatgcttc |
41384959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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