View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13378_low_6 (Length: 287)
Name: NF13378_low_6
Description: NF13378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13378_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 23 - 270
Target Start/End: Complemental strand, 23798391 - 23798153
Alignment:
| Q |
23 |
tgaatgggatagggagagattagagcttgatagaagattgaaggagcaattaagtggtggagacggtggcgacgataattctgttaatcattcagatgtt |
122 |
Q |
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| T |
23798391 |
tgaatgggatagggagagattagagcttgatagaagattgaaggagcaattaagtggtggtgacg---------ataattctgttaatcattcagatgtt |
23798301 |
T |
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| Q |
123 |
ttggaagctctttcgcgagctttgaggaaaaccgaggagtcttatcttgatgtcgcggataaaatggtgatggagaatccggaacttgctttaatgggtt |
222 |
Q |
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| T |
23798300 |
ttggaagctctttcgcgagctttgaggaaaaccgaggagtcttatcttgatgtcgcggataaaatggtgatggagaatccggaacttgctttaatgggtt |
23798201 |
T |
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| Q |
223 |
cttgtgttcttgtaatgttgatgaaaggggaagatgtttatgtgatga |
270 |
Q |
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| T |
23798200 |
cttgtgttcttgtaatgttgatgaaaggggaagatgtttatgtgatga |
23798153 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 270
Target Start/End: Complemental strand, 38199127 - 38199055
Alignment:
| Q |
198 |
aatccggaacttgctttaatgggttcttgtgttcttgtaatgttgatgaaaggggaagatgtttatgtgatga |
270 |
Q |
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| T |
38199127 |
aatccagaacttgctataatggggtcatgtgttctagtgatgttgatgaaggatcaagatgtttatgtcatga |
38199055 |
T |
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