View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13379_high_1 (Length: 621)
Name: NF13379_high_1
Description: NF13379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13379_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 546; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 19 - 615
Target Start/End: Original strand, 46666695 - 46667300
Alignment:
| Q |
19 |
tgtgttccattcaatagcttgacatctttgtcataggagttggctagtacagataccattctacggagtaaatttcttctgaacaagaatattgtagaaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46666695 |
tgtgttccattcaatagcttgacatctttgtcataggagttggctagtacagataccattctacggagtaaatttcttctgaacaagaatattgtagaaa |
46666794 |
T |
|
| Q |
119 |
ctcgtttttgctccaaatattcaactatttctttatgatgatccatcaaacccttaatttattgaaaaatatgacaatagttagataaattttatcgtta |
218 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
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| T |
46666795 |
cttgtttttgctccaaatattcaactatttctttatgatgatccatcaaacccttaatttattgaaaaatatgacaatagttagagaaattttatcgtaa |
46666894 |
T |
|
| Q |
219 |
agtgatgcaattcaattaaccatatgtttggtgatagcacaactcaattcaataaaatcaaatactacttaaaaaataaacacaccctt---------ct |
309 |
Q |
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| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
46666895 |
aatgatgcaattcaattaaccatatgtttggtaatagcacaactcaattcaataaaatcaaatactacttaaaaaataaacacacccttacttaagaact |
46666994 |
T |
|
| Q |
310 |
tctacgatacattcgtaaattgaggtgttaggatactctacctacctgattaagcatccacttgaagccaatagcagcagagcactcattcttggaagca |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
46666995 |
tctacgatacattcgtaaattgaggtgttaggatactctacctacctgattaagcatccacttgtagccaatagcagcagagcactcattcttggaagca |
46667094 |
T |
|
| Q |
410 |
ctagtaaaccaatcaagattatacacttcatttatagtcttcaaaattaaagaaacattttcccttcttttctcaactgaaaatatttctccatttgagc |
509 |
Q |
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| T |
46667095 |
ctagtgaaccaatcaagattatacacttcatttatagtcttcaaaattaaagaaacattttcccttcttttctcaactgaaaatatttctccatttgagc |
46667194 |
T |
|
| Q |
510 |
ttacgttaatatgactattcaaaaatgtttcaaaccaaccactcccagatctttgcattgacacaatgcaaaaatatcgtacaggattgcaactacactc |
609 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46667195 |
ttacgttaatatgactattcaaaaatgtttcaaaccaaccactcccagatctttgcattgacacaatgcaaaaatatcgtacaggattgcaactacactc |
46667294 |
T |
|
| Q |
610 |
ctctct |
615 |
Q |
| |
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|||||| |
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| T |
46667295 |
ctctct |
46667300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 488 - 572
Target Start/End: Original strand, 44195436 - 44195520
Alignment:
| Q |
488 |
gaaaatatttctccatttgagcttacgttaatatgactattcaaaaatgtttcaaaccaaccactcccagatctttgcattgaca |
572 |
Q |
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| T |
44195436 |
gaaaagatttctccatttgagcttatgttaggatgactatttaaaaacgtctcatgccatccactcccaaatctctgcatcgaca |
44195520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 353 - 570
Target Start/End: Complemental strand, 6117178 - 6116961
Alignment:
| Q |
353 |
acctgattaagcatccacttgaagccaatagcagcagagcactcattcttggaagcactagtaaaccaatcaagattatacacttcatttatagtcttca |
452 |
Q |
| |
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||||||||||||||||||||||| || | ||| | |||||||||||| |||||||||||||||||||||||||| ||||| | || | ||||||| |
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| T |
6117178 |
acctgattaagcatccacttgaaacccacagctgagttgcactcattcttagaagcactagtaaaccaatcaagattgtacaccttatcaagtgtcttca |
6117079 |
T |
|
| Q |
453 |
aaattaaagaaacattttcccttcttttctcaactgaaaatatttctccatttgagcttacgttaatatgactattcaaaaatgtttcaaaccaaccact |
552 |
Q |
| |
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||||| | |||| ||||||||||||||| || |||||||| || ||||| || |||| ||||| ||||||||||||| ||| |||||||| ||||| |
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| T |
6117078 |
aaattgatgaaatattttcccttcttttgggtacagaaaatatctccccattggaacttatattaatgtgactattcaaaagtgtctcaaaccacccact |
6116979 |
T |
|
| Q |
553 |
cccagatctttgcattga |
570 |
Q |
| |
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|||||||||||||||||| |
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| T |
6116978 |
cccagatctttgcattga |
6116961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 8e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 352 - 561
Target Start/End: Complemental strand, 6522001 - 6521792
Alignment:
| Q |
352 |
tacctgattaagcatccacttgaagccaatagcagcagagcactcattcttggaagcactagtaaaccaatcaagattatacacttcatttatagtcttc |
451 |
Q |
| |
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|||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||| | | ||| || | ||| || ||| || || ||||| | |
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| T |
6522001 |
tacctgattaagcatccacttgaagccaattgcggcagaacactcattcttggaagcactactgagccagtccaaattgtatactctatctaaagtctgc |
6521902 |
T |
|
| Q |
452 |
aaaattaaagaaacattttcccttcttt-tctcaactgaaaatatttctccatttgagcttacgttaatatgactattcaaaaatgtttcaaaccaacca |
550 |
Q |
| |
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|||||| ||||| |||||| |||||||| ||| ||| |||||||| || || || |||||||| ||||| ||||||||||||| || |||||||| ||| |
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| T |
6521901 |
aaaattgaagaagcattttgccttctttctct-aacagaaaatatctcgccgttcgagcttacattaatgtgactattcaaaagggtctcaaaccaccca |
6521803 |
T |
|
| Q |
551 |
ctcccagatct |
561 |
Q |
| |
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|| |||||||| |
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|
| T |
6521802 |
ctgccagatct |
6521792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 352 - 432
Target Start/End: Complemental strand, 33930366 - 33930286
Alignment:
| Q |
352 |
tacctgattaagcatccacttgaagccaatagcagcagagcactcattcttggaagcactagtaaaccaatcaagattata |
432 |
Q |
| |
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||||||||||||||||||||| ||||||| |||||| | ||||||||| || ||||||||| ||||||| || |||||||| |
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| T |
33930366 |
tacctgattaagcatccacttcaagccaacagcagccgtgcactcatttttagaagcactattaaaccagtctagattata |
33930286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 488 - 572
Target Start/End: Complemental strand, 33930230 - 33930146
Alignment:
| Q |
488 |
gaaaatatttctccatttgagcttacgttaatatgactattcaaaaatgtttcaaaccaaccactcccagatctttgcattgaca |
572 |
Q |
| |
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||||| ||||| ||||||||||||| |||| ||||||||| ||||| || |||||||| |||||||||||||| ||||| |||| |
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| T |
33930230 |
gaaaagatttccccatttgagcttatgttaggatgactatttaaaaacgtctcaaaccatccactcccagatctctgcatcgaca |
33930146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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