View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13379_high_2 (Length: 406)
Name: NF13379_high_2
Description: NF13379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13379_high_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 29 - 406
Target Start/End: Original strand, 41623038 - 41623420
Alignment:
| Q |
29 |
tttaataattagcgataaagttagagacagtttcttttttccaattgtaaccgcacgttaaaactatcggaaaaaagttgtgttgtttgatgtcatcata |
128 |
Q |
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| T |
41623038 |
tttaataattagcgataaagttagagacagtttcttttttccgattgtaactgcgcgttaaaactatcggaaaaaagttgtgttgtttggtgtcatcata |
41623137 |
T |
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| Q |
129 |
tccaatttgagggattaatatttacaattgcgcgttcggatgttactgaattttctcgcgnnnnnnnttgaaccaaagggtggtccctagtgattcatc- |
227 |
Q |
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| T |
41623138 |
tccaatttgaggaattaatatttacaattgcgcgttcggatgttactgaattttctcgcgaaaaaaattgaaccaaagggtggtccctagtgattcatct |
41623237 |
T |
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| Q |
228 |
-tccttaggatgcaaaagcattaatgtctcattgttgtcattatgtctgtcataatatacttgacttggaagccaaaaacaagcatctgatgatgaatgc |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41623238 |
ttccttaggatgcaaaagcattaatgtctcattgttgtcattatgtctgtcataatatacttgacttggaagccaaaaacaagcatctgatgatgaatgc |
41623337 |
T |
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| Q |
327 |
aagatttaaatgt---agctatgttgagtcnnnnnnnggagctaactaagtctcacaaacagaaatttttcatgtttctaagc |
406 |
Q |
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|||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41623338 |
aagatttaaaggtagcagctatgttgagtctttttctggagctaactaagtctcacaaacagaaatttttcatgtttctaagc |
41623420 |
T |
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