View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13379_high_3 (Length: 217)

Name: NF13379_high_3
Description: NF13379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13379_high_3
NF13379_high_3
[»] chr6 (13 HSPs)
chr6 (19-200)||(16838335-16838516)
chr6 (19-200)||(17070160-17070341)
chr6 (19-200)||(16797823-16798004)
chr6 (19-169)||(16867362-16867512)
chr6 (19-200)||(16658663-16658844)
chr6 (19-200)||(16781756-16781937)
chr6 (19-200)||(16988111-16988283)
chr6 (19-192)||(18872518-18872691)
chr6 (19-200)||(18793947-18794128)
chr6 (19-200)||(18587028-18587209)
chr6 (19-152)||(16788619-16788752)
chr6 (19-200)||(18870033-18870214)
chr6 (19-127)||(18805589-18805697)
[»] chr3 (2 HSPs)
chr3 (19-200)||(38938682-38938863)
chr3 (19-201)||(7052585-7052767)
[»] scaffold0256 (1 HSPs)
scaffold0256 (19-200)||(9801-9982)
[»] scaffold0133 (2 HSPs)
scaffold0133 (19-200)||(9158-9339)
scaffold0133 (19-200)||(13506-13687)
[»] scaffold0144 (1 HSPs)
scaffold0144 (19-199)||(38141-38321)
[»] scaffold0511 (1 HSPs)
scaffold0511 (19-200)||(10013-10194)
[»] scaffold0230 (1 HSPs)
scaffold0230 (19-200)||(5333-5514)
[»] chr8 (1 HSPs)
chr8 (19-136)||(13378748-13378868)


Alignment Details
Target: chr6 (Bit Score: 174; Significance: 9e-94; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 16838335 - 16838516
Alignment:
Q  19 tcatcctctttccaatgttgcgacgagccaaaatcttcattggatggaaacgggtgatgcacttgttggcttcatgtgcttttgaagttattgaacattc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  16838335 tcatcctctttccaatgttgcgacgagccaaaatcttcattggatggaaacgggtgatgcacttgttgccttcatgtgcttttgaagttattgaacattc 16838434  T
Q  119 atccaatatatcatcaagtacataagcagcatcacccaatttctgcagccattgtttcacaacatcgcttgttatctgcttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16838435 atccaatatatcatcaagtacataagcagcatcacccaatttctgcagccattgtttcacaacattgcttgttatctgcttc 16838516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 17070160 - 17070341
Alignment:
Q  19 tcatcctctttccaatgttgcgacgagccaaaatcttcattggatggaaacgggtgatgcacttgttggcttcatgtgcttttgaagttattgaacattc 118  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  17070160 tcatcctctttccaatgttgcgatgagccaaaatcttcattggatggaaacgggtgatgcacttgttgccttcatgtgcttttgaagttattgaacattc 17070259  T
Q  119 atccaatatatcatcaagtacataagcagcatcacccaatttctgcagccattgtttcacaacatcgcttgttatctgcttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17070260 atccaatatatcatcaagtacataagcagcatcacccaatttctgcagccattgtttcacaacatcgcttgttatctgcttc 17070341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 16797823 - 16798004
Alignment:
Q  19 tcatcctctttccaatgttgcgacgagccaaaatcttcattggatggaaacgggtgatgcacttgttggcttcatgtgcttttgaagttattgaacattc 118  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  16797823 tcatcctctttccaatgttgcgacgagccaaaattttcattggatgaaaacgggtgatgcacttgttgccttcatgtgcttttgaagttattgaacattc 16797922  T
Q  119 atccaatatatcatcaagtacataagcagcatcacccaatttctgcagccattgtttcacaacatcgcttgttatctgcttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  16797923 atccaatatatcatcaagtacataagcagcatcacccaatttctgcagccatttttgcacaacatcgcttgttatctgcttc 16798004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 19 - 169
Target Start/End: Complemental strand, 16867512 - 16867362
Alignment:
Q  19 tcatcctctttccaatgttgcgacgagccaaaatcttcattggatggaaacgggtgatgcacttgttggcttcatgtgcttttgaagttattgaacattc 118  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||| || |||| |||||||||||||||||||||||    
T  16867512 tcatcctctttccaatgttgcgacgagccaaaatcttcataggatggaaactagtgatgcacttgttgcctccatgcgcttttgaagttattgaacattc 16867413  T
Q  119 atccaatatatcatcaagtacataagcagcatcacccaatttctgcagcca 169  Q
    |||||||||||||||||||||||||||||| ||||||| ||| ||||||||    
T  16867412 atccaatatatcatcaagtacataagcagcgtcacccagtttttgcagcca 16867362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 16658663 - 16658844
Alignment:
Q  19 tcatcctctttccaatgttgcgacgagccaaaatcttcattggatggaaacgggtgatgcacttgttggcttcatgtgcttttgaagttattgaacattc 118  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||| ||||  ||||||||||||||| || ||||||||||||||||||||||||||||    
T  16658663 tcatcctctttccaatgttacgacgagccaaaatcttcataggatgaaaactagtgatgcacttgttgcctccatgtgcttttgaagttattgaacattc 16658762  T
Q  119 atccaatatatcatcaagtacataagcagcatcacccaatttctgcagccattgtttcacaacatcgcttgttatctgcttc 200  Q
    |||||||||||||||||||||||||||||| ||||||| ||| |||||||| |   |||||| |||| ||||||| ||||||    
T  16658763 atccaatatatcatcaagtacataagcagcgtcacccagtttttgcagccagttcctcacaagatcgtttgttatttgcttc 16658844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 16781756 - 16781937
Alignment:
Q  19 tcatcctctttccaatgttgcgacgagccaaaatcttcattggatggaaacgggtgatgcacttgttggcttcatgtgcttttgaagttattgaacattc 118  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| | ||||||| |  ||||||||||| | ||||||||||||||    
T  16781756 tcatcctctttccaatgttgcgacgagccaaaatcttcataggatggaaacgagtgatccgcttgttgtcgccatgtgcttttaaggttattgaacattc 16781855  T
Q  119 atccaatatatcatcaagtacataagcagcatcacccaatttctgcagccattgtttcacaacatcgcttgttatctgcttc 200  Q
     ||||||||||||||||| |||||||||||||||| || || ||| | ||| | ||||||| ||||  ||||||| ||||||    
T  16781856 gtccaatatatcatcaagcacataagcagcatcacgcagttgctgtaaccactctttcacagcatcatttgttatttgcttc 16781937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 16988111 - 16988283
Alignment:
Q  19 tcatcctctttccaatgttgcgacgagccaaaatcttcattggatggaaacgggtgatgcacttgttggcttcatgtgcttttgaagttattgaacattc 118  Q
    |||||||||| |||||||||||| |||||||||||||||| ||||||||||  |||         ||| || ||||||||||||| |||||||| |||||    
T  16988111 tcatcctcttcccaatgttgcgatgagccaaaatcttcataggatggaaactagtg---------ttgtctccatgtgcttttgaggttattgagcattc 16988201  T
Q  119 atccaatatatcatcaagtacataagcagcatcacccaatttctgcagccattgtttcacaacatcgcttgttatctgcttc 200  Q
    ||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||||||| ||||||||| ||||||    
T  16988202 atccaatatatcatcaagtacataagcagcatcagacagtttctgcagccattgtttcacaacattgcttgttatttgcttc 16988283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 18872691 - 18872518
Alignment:
Q  19 tcatcctctttccaatgttgcgacgagccaaaatcttcattggatggaaacgggtgatgcacttgttggcttcatgtgcttttgaagttattgaacattc 118  Q
    |||||||||||||||| |  |||||||||||||||||| | ||||||||||||||||| ||||||||| || ||||||||||||| ||||||| ||| ||    
T  18872691 tcatcctctttccaatatcccgacgagccaaaatcttcttaggatggaaacgggtgatccacttgttgtctccatgtgcttttgatgttattgtacaatc 18872592  T
Q  119 atccaatatatcatcaagtacataagcagcatcacccaatttctgcagccattgtttcacaacatcgcttgtta 192  Q
    |||||||||||||||||| ||||| ||| |||||  ||  ||||||||||| | ||||||||||  ||||||||    
T  18872591 atccaatatatcatcaagaacataggcaacatcagtcagcttctgcagccaatctttcacaacacggcttgtta 18872518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 18794128 - 18793947
Alignment:
Q  19 tcatcctctttccaatgttgcgacgagccaaaatcttcattggatggaaacgggtgatgcacttgttggcttcatgtgcttttgaagttattgaacattc 118  Q
    |||||||||||||||| || | |||||||||||||||| | ||||| ||||||||||| ||||||||| || ||||||||||||| ||||||| ||| ||    
T  18794128 tcatcctctttccaatattcctacgagccaaaatcttcttaggatgtaaacgggtgatccacttgttgtctccatgtgcttttgatgttattgtacaatc 18794029  T
Q  119 atccaatatatcatcaagtacataagcagcatcacccaatttctgcagccattgtttcacaacatcgcttgttatctgcttc 200  Q
    |||||||||||||||||| ||||| ||| |||||   |  ||||||||||| | ||||||||||  ||||||||| ||||||    
T  18794028 atccaatatatcatcaagaacataggcaacatcagttagcttctgcagccaatctttcacaacacggcttgttatttgcttc 18793947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 18587209 - 18587028
Alignment:
Q  19 tcatcctctttccaatgttgcgacgagccaaaatcttcattggatggaaacgggtgatgcacttgttggcttcatgtgcttttgaagttattgaacattc 118  Q
    |||||||||||||||| |  | ||||||||||||| || | ||||||||||||||||| ||||||||| || |||||||||||||  |||||| ||| ||    
T  18587209 tcatcctctttccaatatccctacgagccaaaatcatcttaggatggaaacgggtgatccacttgttgtctccatgtgcttttgattttattgtacaatc 18587110  T
Q  119 atccaatatatcatcaagtacataagcagcatcacccaatttctgcagccattgtttcacaacatcgcttgttatctgcttc 200  Q
    |||||||||||| ||||| ||||||||| |||||  ||  ||||||||||| | ||||||||||  ||||||||| ||||||    
T  18587109 atccaatatatcgtcaagaacataagcaacatcagtcagcttctgcagccaatctttcacaacacggcttgttatttgcttc 18587028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 16788619 - 16788752
Alignment:
Q  19 tcatcctctttccaatgttgcgacgagccaaaatcttcattggatggaaacgggtgatgcacttgttggcttcatgtgcttttgaagttattgaacattc 118  Q
    ||||||||||||||| ||  ||  |||||||||||||| | ||| ||||||||||||||||||||||| || ||||||||||||| ||||||||||||||    
T  16788619 tcatcctctttccaacgtcacgctgagccaaaatcttcttaggaaggaaacgggtgatgcacttgttgtctccatgtgcttttgatgttattgaacattc 16788718  T
Q  119 atccaatatatcatcaagtacataagcagcatca 152  Q
     ||||||| ||||||||| |||| ||||||||||    
T  16788719 gtccaataaatcatcaagaacatgagcagcatca 16788752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 18870214 - 18870033
Alignment:
Q  19 tcatcctctttccaatgttgcgacgagccaaaatcttcattggatggaaacgggtgatgcacttgttggcttcatgtgcttttgaagttattgaacattc 118  Q
    |||||||||||||||| |  | ||||||||||||| || | |||||||||| |||||| ||||||||| || |||||||||||||  |||||| ||| ||    
T  18870214 tcatcctctttccaatatccctacgagccaaaatcatcttaggatggaaactggtgatccacttgttgtctccatgtgcttttgattttattgtacaatc 18870115  T
Q  119 atccaatatatcatcaagtacataagcagcatcacccaatttctgcagccattgtttcacaacatcgcttgttatctgcttc 200  Q
    |||||||||||||||||| ||||||||| |||||  ||  ||||||||||| | ||||||||||  ||| ||||| ||||||    
T  18870114 atccaatatatcatcaagaacataagcaacatcagtcagcttctgcagccaatctttcacaacacggctcgttatttgcttc 18870033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 18805697 - 18805589
Alignment:
Q  19 tcatcctctttccaatgttgcgacgagccaaaatcttcattggatggaaacgggtgatgcacttgttggcttcatgtgcttttgaagttattgaacattc 118  Q
    |||||||||||||||| |  |||||||||||||||||| | ||||||||||||||||| ||||||||| || ||||||||||||| ||||||| ||| ||    
T  18805697 tcatcctctttccaatatcccgacgagccaaaatcttcttaggatggaaacgggtgatccacttgttgtctccatgtgcttttgatgttattgtacaatc 18805598  T
Q  119 atccaatat 127  Q
    |||||||||    
T  18805597 atccaatat 18805589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 38938863 - 38938682
Alignment:
Q  19 tcatcctctttccaatgttgcgacgagccaaaatcttcattggatggaaacgggtgatgcacttgttggcttcatgtgcttttgaagttattgaacattc 118  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||| ||||||||| |  ||||||||||| | ||||||||||||||    
T  38938863 tcatcctctttccaatgttgcgacgagccaaaatcttcagaggatggaaacgagtgatccacttgttgtcgccatgtgcttttaaggttattgaacattc 38938764  T
Q  119 atccaatatatcatcaagtacataagcagcatcacccaatttctgcagccattgtttcacaacatcgcttgttatctgcttc 200  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||| | ||||||||||| |||||| || ||||||    
T  38938763 atccaatatatcatcaagtacataagcaacatcacgcaatttctgcagccagtctttcacaacatggcttgtaatttgcttc 38938682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 7052767 - 7052585
Alignment:
Q  19 tcatcctctttccaatgttgcgacgagccaaaatcttcattggatggaaacgggtgatgcacttgttggcttcatgtgcttttgaagttattgaacattc 118  Q
    ||||||||||||||||||  || ||||||||||||||| | ||||||||||||||||| ||||||||| || ||   | |||||| ||||||||||||||    
T  7052767 tcatcctctttccaatgtcacgccgagccaaaatcttcttaggatggaaacgggtgatccacttgttgtctccacagggttttgatgttattgaacattc 7052668  T
Q  119 atccaatatatcatcaagtacataagcagcatcacccaatttctgcagccattgtttcacaacatcgcttgttatctgcttca 201  Q
     ||||||||||||||||| |||| |||||||||| |||  ||||||||||| | ||| ||| ||| |||||| || |||||||    
T  7052667 gtccaatatatcatcaagaacatgagcagcatcagccagcttctgcagccaatcttttacagcatggcttgtaatttgcttca 7052585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 9801 - 9982
Alignment:
Q  19 tcatcctctttccaatgttgcgacgagccaaaatcttcattggatggaaacgggtgatgcacttgttggcttcatgtgcttttgaagttattgaacattc 118  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| | ||||||| |  ||||||||||| | ||||||||||||||    
T  9801 tcatcctctttccaatgttgcgacgagccaaaatcttcataggatggaaacgagtgatccgcttgttgtcgccatgtgcttttaaggttattgaacattc 9900  T
Q  119 atccaatatatcatcaagtacataagcagcatcacccaatttctgcagccattgtttcacaacatcgcttgttatctgcttc 200  Q
    |||||||||||||||||| |||||||||||||||| || || ||| ||||| | ||| ||| ||||| ||||||| ||||||    
T  9901 atccaatatatcatcaagcacataagcagcatcacgcagttgctgtagccactctttgacagcatcgtttgttatttgcttc 9982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 9158 - 9339
Alignment:
Q  19 tcatcctctttccaatgttgcgacgagccaaaatcttcattggatggaaacgggtgatgcacttgttggcttcatgtgcttttgaagttattgaacattc 118  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||| | |||||||    ||||||||||| | ||||||||||||||    
T  9158 tcatcctctttccaatgttgcgacgaaccaaaatcttcataggatggaaacgagtgatccgcttgttgttaccatgtgcttttaaggttattgaacattc 9257  T
Q  119 atccaatatatcatcaagtacataagcagcatcacccaatttctgcagccattgtttcacaacatcgcttgttatctgcttc 200  Q
    |||||||||||||||||| |||||||||||||||| || || ||| ||||| | ||| ||| ||||| ||||||| ||||||    
T  9258 atccaatatatcatcaagcacataagcagcatcacgcagttgctgtagccactctttgacagcatcgtttgttatttgcttc 9339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 13506 - 13687
Alignment:
Q  19 tcatcctctttccaatgttgcgacgagccaaaatcttcattggatggaaacgggtgatgcacttgttggcttcatgtgcttttgaagttattgaacattc 118  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| | ||||||| |  |||||||| || | ||||||||||||||    
T  13506 tcatcctctttccaatgttgcgacgagccaaaatcttcataggatggaaacgagtgatccgcttgttgtcgccatgtgctcttaaggttattgaacattc 13605  T
Q  119 atccaatatatcatcaagtacataagcagcatcacccaatttctgcagccattgtttcacaacatcgcttgttatctgcttc 200  Q
    |||||||||||||||||  |||||||||||||||  || || ||| ||||| | ||| ||| ||||| ||||||| ||||||    
T  13606 atccaatatatcatcaatcacataagcagcatcaatcagttgctgtagccactctttgacagcatcgtttgttatttgcttc 13687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 38141 - 38321
Alignment:
Q  19 tcatcctctttccaatgttgcgacgagccaaaatcttcattggatggaaacgggtgatgcacttgttggcttcatgtgcttttgaagttattgaacattc 118  Q
    |||||||||||||||||||||||| ||||||||||||||  ||||||||||  ||||||||||||| | || | |||| |||| | ||||||||||||||    
T  38141 tcatcctctttccaatgttgcgacaagccaaaatcttcacaggatggaaactagtgatgcacttgtcgtctccgtgtggttttaaggttattgaacattc 38240  T
Q  119 atccaatatatcatcaagtacataagcagcatcacccaatttctgcagccattgtttcacaacatcgcttgttatctgctt 199  Q
    ||||||||||||||||||||||||||||| |||||| | || ||| ||||| | ||||||  ||||| ||||||| |||||    
T  38241 atccaatatatcatcaagtacataagcagaatcaccgagttgctgtagccactctttcacggcatcgtttgttatttgctt 38321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 10013 - 10194
Alignment:
Q  19 tcatcctctttccaatgttgcgacgagccaaaatcttcattggatggaaacgggtgatgcacttgttggcttcatgtgcttttgaagttattgaacattc 118  Q
    |||||||||||||||| |  | |||||||||||||||| | ||||| ||||||||||| ||||||||| || ||||||||||||| ||||||| ||| ||    
T  10013 tcatcctctttccaatatgccaacgagccaaaatcttcttaggatgaaaacgggtgatccacttgttgtctccatgtgcttttgatgttattgtacaatc 10112  T
Q  119 atccaatatatcatcaagtacataagcagcatcacccaatttctgcagccattgtttcacaacatcgcttgttatctgcttc 200  Q
    |||||||||||||||||| ||||| ||| |||||   |  ||||||||||| | ||||||||||  ||||||||| ||||||    
T  10113 atccaatatatcatcaagaacataggcaacatcagttagcttctgcagccaatctttcacaacacggcttgttatttgcttc 10194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 5333 - 5514
Alignment:
Q  19 tcatcctctttccaatgttgcgacgagccaaaatcttcattggatggaaacgggtgatgcacttgttggcttcatgtgcttttgaagttattgaacattc 118  Q
    |||||||||||||||| |  | ||||||||||||| || | ||||||||||||||||| ||||||||| || |||||||||||||  |||||| ||| ||    
T  5333 tcatcctctttccaatatccctacgagccaaaatcatcttaggatggaaacgggtgatccacttgttgtctccatgtgcttttgattttattgtacaatc 5432  T
Q  119 atccaatatatcatcaagtacataagcagcatcacccaatttctgcagccattgtttcacaacatcgcttgttatctgcttc 200  Q
    |||||||||||| ||||| ||||||||| |||||  ||  ||||||||||| | ||||||||||  ||||||||| ||||||    
T  5433 atccaatatatcgtcaagaacataagcaacatcagtcagcttctgcagccaatctttcacaacacggcttgttatttgcttc 5514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 13378748 - 13378868
Alignment:
Q  19 tcatcctctttccaatgttgcgacgagccaaaatcttcattggatggaaacgggtgatgcacttgttggcttc---atgtgcttttgaagttattgaaca 115  Q
    ||||||||||||||||    || ||||||||||||||| | ||||||||||| ||||| ||||||| | | ||   ||||||||| ||  |||| ||| |    
T  13378748 tcatcctctttccaatacctcggcgagccaaaatcttcttaggatggaaacgagtgatccacttgtcgtcgtctccatgtgctttggatcttatcgaata 13378847  T
Q  116 ttcatccaatatatcatcaag 136  Q
    ||| || ||||||||||||||    
T  13378848 ttcgtctaatatatcatcaag 13378868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University