View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13380_high_1 (Length: 569)
Name: NF13380_high_1
Description: NF13380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13380_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 409; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 20 - 559
Target Start/End: Complemental strand, 50554960 - 50554379
Alignment:
| Q |
20 |
attataatagtatatgttagttaatttcttcaatcattgatatttattttcgtatgcataatta-------agctcactgtataccttagctctcaaagc |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
50554960 |
attataatagtatatgttagttaatttcttcaatcagtgatatttattttcgtatgaataattatataataagctcactgtataccttagctctcaaagc |
50554861 |
T |
|
| Q |
113 |
ttctacatctgattttagcactcggttatttgtatcagcctcatgaaattgttgactggtatccgtaaactgtttatatagtgttgcattttccagtttc |
212 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
50554860 |
ttcaacatctgattttagcactcggttatttgtatcagcctcatgaaattgttgactggtatcagtaaactgtttatatagtgttgcattttccagtttc |
50554761 |
T |
|
| Q |
213 |
agtttttcaacctgagatatcaaaattcaaatgtgaagaaagtgatgactacttatg-------------------ctcacaaaagattatgctccaaaa |
293 |
Q |
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||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
50554760 |
agtttttcaacctgagagatcaaaattcaaatgggaagaaaatgatgactacttatgctgtttagctgttatacatctcacaaaagattatgctccaaaa |
50554661 |
T |
|
| Q |
294 |
cattgactagttacctgagcctcaagttcagacaaatgcgcttgttttctccaccttgacctcctggctgactcgcaattagaatccttcctgaaaccat |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50554660 |
cattgactagttacctgagcctcaagttcagacaaatgcgcttgttttctccaccttgacctcctggctgactcgcaattagaatccttcctgaaaccat |
50554561 |
T |
|
| Q |
394 |
gtcatgaatcattattatatcataatttgaaaaccacatataataag----------------aagttagacggaaataccttctttggcgtttcatatc |
477 |
Q |
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| T |
50554560 |
gtcatgaatcattattatatcataatttgaaaaccaaatataataagaaaagtgttgtatttaaagttagacggaaataccttctttggcgtttcatatc |
50554461 |
T |
|
| Q |
478 |
aactggatttgtaatttgttcacaaggacctgattcattatcttcatcggatggatccgatgaaccacttgctgtccctttg |
559 |
Q |
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| T |
50554460 |
aactggatttgtaatttgttcacaaggacctgattcattatcttcatcggatggatccgatgaaccacttgctgtccctttg |
50554379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 82 - 269
Target Start/End: Complemental strand, 50817513 - 50817326
Alignment:
| Q |
82 |
taagctcactgtataccttagctctcaaagcttctacatctgattttagcactcggttatttgtatcagcctcatgaaattgttgactggtatccgtaaa |
181 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| | ||||||||| |
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| T |
50817513 |
taagctctccgtataccttagctctcaaagcttctacatctgattttagcacttggttatttgtatcagcctcgtgaaattgttgactagcatccgtaaa |
50817414 |
T |
|
| Q |
182 |
ctgtttatatagtgttgcattttccagtttcagtttttcaacctgagatatcaaaattcaaatgtgaagaaagtgatgactacttatg |
269 |
Q |
| |
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|||||| ||||| |||||||||||||||||||||||| |||||| ||| ||||||||||||||| ||||||| |||| |||||||||| |
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| T |
50817413 |
ctgtttgtatagggttgcattttccagtttcagttttccaacctaagaaatcaaaattcaaatgggaagaaaatgatcactacttatg |
50817326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 82 - 269
Target Start/End: Original strand, 50858351 - 50858538
Alignment:
| Q |
82 |
taagctcactgtataccttagctctcaaagcttctacatctgattttagcactcggttatttgtatcagcctcatgaaattgttgactggtatccgtaaa |
181 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| | ||||||||| |
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| T |
50858351 |
taagctctccgtataccttagctctcaaagcttctacatctgattttagcacttggttatttgtatcagcctcgtgaaattgttgactagcatccgtaaa |
50858450 |
T |
|
| Q |
182 |
ctgtttatatagtgttgcattttccagtttcagtttttcaacctgagatatcaaaattcaaatgtgaagaaagtgatgactacttatg |
269 |
Q |
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|||||| ||||| |||||||||||||||||||||||| |||||| ||| ||||||||||||||| ||||||| |||| |||||||||| |
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| T |
50858451 |
ctgtttgtatagggttgcattttccagtttcagttttccaacctaagaaatcaaaattcaaatgggaagaaaatgatcactacttatg |
50858538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 287 - 408
Target Start/End: Complemental strand, 50817093 - 50816972
Alignment:
| Q |
287 |
tccaaaacattgactagttacctgagcctcaagttcagacaaatgcgcttgttttctccaccttgacctcctggctgactcgcaattagaatccttcctg |
386 |
Q |
| |
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||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||| |||||| ||||||||||||| | ||| ||| |||||||| |
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| T |
50817093 |
tccaaaacattgattagttacctgagactcaagttcaaacaaatgcgcttgttttctccgccttgatctcctggctgacttgggatttgaaaccttcctg |
50816994 |
T |
|
| Q |
387 |
aaaccatgtcatgaatcattat |
408 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
50816993 |
aaaccatgtcatgaatcattat |
50816972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 287 - 408
Target Start/End: Original strand, 50858771 - 50858892
Alignment:
| Q |
287 |
tccaaaacattgactagttacctgagcctcaagttcagacaaatgcgcttgttttctccaccttgacctcctggctgactcgcaattagaatccttcctg |
386 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||| |||||| ||||||||||||| | ||| ||| |||||||| |
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|
| T |
50858771 |
tccaaaacattgattagttacctgagactcaagttcaaacaaatgcgcttgttttctccgccttgatctcctggctgacttgggatttgaaaccttcctg |
50858870 |
T |
|
| Q |
387 |
aaaccatgtcatgaatcattat |
408 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
50858871 |
aaaccatgtcatgaatcattat |
50858892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 93 - 225
Target Start/End: Original strand, 1130524 - 1130656
Alignment:
| Q |
93 |
tataccttagctctcaaagcttctacatctgattttagcactcggttatttgtatcagcctcatgaaattgttgactggtatccgtaaactgtttatata |
192 |
Q |
| |
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||||||||||||||||||||||| ||||| |||||||| |||||||| || || | ||| || |||||||||| |||| ||| |||| ||| ||| ||| |
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| T |
1130524 |
tataccttagctctcaaagcttcaacatcggattttagtactcggttgttagtgttagcatcgcgaaattgttggctggcatctgtaagctgcttaaata |
1130623 |
T |
|
| Q |
193 |
gtgttgcattttccagtttcagtttttcaacct |
225 |
Q |
| |
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| ||||||||||||| ||| || |||||||| |
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| T |
1130624 |
ggcttgcattttccagcctcaattgttcaacct |
1130656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 470 - 534
Target Start/End: Original strand, 1131520 - 1131584
Alignment:
| Q |
470 |
ttcatatcaactggatttgtaatttgttcacaaggacctgattcattatcttcatcggatggatc |
534 |
Q |
| |
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||||||||||| || |||||| |||||||||||||||||| ||||| ||||||||| |||||||| |
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|
| T |
1131520 |
ttcatatcaacagggtttgtactttgttcacaaggacctgcttcatcatcttcatcagatggatc |
1131584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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