View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13380_high_2 (Length: 538)
Name: NF13380_high_2
Description: NF13380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13380_high_2 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 5 - 523
Target Start/End: Original strand, 17588539 - 17589058
Alignment:
| Q |
5 |
gagagagaagaaacatgagagcgagtgacagagagggaaagggcggagactgccaccggttctatcgtgtgcagccacgccggctttccttctcgccaga |
104 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| || ||||||||||||| ||||||||||||||| |
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| T |
17588539 |
gagagaaaagaaacatgagagcgagtgacagagaggaaaagggtggagactgccaccggttctatcatgcgcagccacgccggtgttccttctcgccaga |
17588638 |
T |
|
| Q |
105 |
tgtgaggtccttttgaggg-taaggggttcaaacagggtgccagaaacgggggaatgagaatgattggcttgatgtgaagtctatcataatgttatttca |
203 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
17588639 |
tgtgaggtcctttcgaggggtaaggggttcaaacagggtgccagaaacgggggaatgaggatgattggcttgatgtgaagtctatcataatgttatttca |
17588738 |
T |
|
| Q |
204 |
atttttattttataccggtgatactttagaaagagcaataaaagtaataataataattaaacaaataccttaatctggtccctctctgcttcaaattcat |
303 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17588739 |
atttttattttataacggtgatactttagaaagagcaataaaagtaataataataattaaacaaataccttaatctggtccctctctgcttcaaattcat |
17588838 |
T |
|
| Q |
304 |
gtgttggaagttgttcatcctcacccaaaggagagnnnnnnntcttaggacaccttgacttaacaccatatttcttacaaaaaggaacccaaactttagc |
403 |
Q |
| |
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||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17588839 |
gtgttggaagttgttcatcctcacccaaaggtgagaaaaaaatcttaggacaccttgacttaacaccatatttcttacaaaaaggaacccaaactttagc |
17588938 |
T |
|
| Q |
404 |
aaattgaaaagcctctttaatcccaaatagagtaatggtagaacctccatcatcagaaagataaatagaaagtttatcaggagggtagtccatagcaata |
503 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
17588939 |
aaattgaaaagcctctttaatcccaaatagagtaatggtagaacctccatcatcagaaagataaatagaaagtttatcaggagggtaatccatagcaata |
17589038 |
T |
|
| Q |
504 |
gcagaaacaacagtgttcat |
523 |
Q |
| |
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|||||||||||||||||||| |
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| T |
17589039 |
gcagaaacaacagtgttcat |
17589058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 266 - 523
Target Start/End: Complemental strand, 270578 - 270318
Alignment:
| Q |
266 |
aaataccttaatctggtccctctctgcttcaaattcatgtgttggaagt---tgttcatcctcacccaaaggagagnnnnnnntcttaggacaccttgac |
362 |
Q |
| |
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|||||||||||||||||| ||||| || || ||||| |||||| ||| |||||||||||| ||| ||||||| |||||||||||||||| |
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| T |
270578 |
aaataccttaatctggtctctctcagcctcgaattcttgtgttctaagaacatgttcatcctcagccataggagagaaaaaaaccttaggacaccttgac |
270479 |
T |
|
| Q |
363 |
ttaacaccatatttcttacaaaaaggaacccaaactttagcaaattgaaaagcctctttaatcccaaatagagtaatggtagaacctccatcatcagaaa |
462 |
Q |
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|| ||||||||||| |||||||| |||||||| ||||||||||||||| |||||||||||||||||| |||||||| | |||| | ||||||||||||| |
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| T |
270478 |
tttacaccatattttttacaaaagggaacccatactttagcaaattgagtagcctctttaatcccaaaaagagtaatagcagaagcaccatcatcagaaa |
270379 |
T |
|
| Q |
463 |
gataaatagaaagtttatcaggagggtagtccatagcaatagcagaaacaacagtgttcat |
523 |
Q |
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||||||||||||| |||| || |||||| ||||| |||||||||||||||||||||||||| |
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| T |
270378 |
gataaatagaaagcttattagaagggtaatccattgcaatagcagaaacaacagtgttcat |
270318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 151; Significance: 1e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 261 - 523
Target Start/End: Original strand, 16385641 - 16385906
Alignment:
| Q |
261 |
taaacaaataccttaatctggtccctctctgcttcaaattcatgtgttggaagt---tgttcatcctcacccaaaggagagnnnnnnntcttaggacacc |
357 |
Q |
| |
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|||| |||||||||||| |||||||||||| ||||||||||| ||||| |||| ||||||||||||||||||| |||| ||||||||||| |
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| T |
16385641 |
taaataaataccttaatttggtccctctcttcttcaaattcacgtgttcgaagaagatgttcatcctcacccaaagcagagaaaaaaaacttaggacacc |
16385740 |
T |
|
| Q |
358 |
ttgacttaacaccatatttcttacaaaaaggaacccaaactttagcaaattgaaaagcctctttaatcccaaatagagtaatggtagaacctccatcatc |
457 |
Q |
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||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| | ||||||||||||||| |
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| T |
16385741 |
ttgacttaacatcatattttttacaaaaaggaacccaaactttagcaaattgaaaagcctctttaataccaaaaagagtaacaggagaacctccatcatc |
16385840 |
T |
|
| Q |
458 |
agaaagataaatagaaagtttatcaggagggtagtccatagcaatagcagaaacaacagtgttcat |
523 |
Q |
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| T |
16385841 |
agaaagataaatagaaagtttattacaagggtaatccattgcaatagcagaaacaacagtgttcat |
16385906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 147; Significance: 3e-77; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 257 - 523
Target Start/End: Complemental strand, 12195 - 11927
Alignment:
| Q |
257 |
taattaaacaaataccttaatctggtccctctctgcttcaaattcatgtgttgga---agttgttcatcctcacccaaaggagagnnnnnnntcttagga |
353 |
Q |
| |
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|||||||| ||||||||||||||||||||||||| ||||||||||| | | | || ||| |||||| ||||||||||| |||| ||||||| |
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| T |
12195 |
taattaaa-aaataccttaatctggtccctctcttcttcaaattcacgaggtcgatgtagtcgttcattctcacccaaagcagagaagaaaaacttagga |
12097 |
T |
|
| Q |
354 |
caccttgacttaacaccatatttcttacaaaaaggaacccaaactttagcaaattgaaaagcctctttaatcccaaatagagtaatggtagaacctccat |
453 |
Q |
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||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| | |||||||||| |
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| T |
12096 |
caccttgacttaacatcatattttttacaaaaaggaacccaaactttagcaaattcaaaagcctctttaatcccaaaaagagtaataggggaacctccat |
11997 |
T |
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| Q |
454 |
catcagaaagataaatagaaagtttatcaggagggtagtccatagcaatagcagaaacaacagtgttcat |
523 |
Q |
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||||||||||||||||||||||||||| || |||||||||||| ||||||||||||| |||||||||||| |
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| T |
11996 |
catcagaaagataaatagaaagtttattagaagggtagtccattgcaatagcagaaataacagtgttcat |
11927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 31 - 181
Target Start/End: Complemental strand, 20476106 - 20475955
Alignment:
| Q |
31 |
gacagagagggaaagggcggagactgccaccggttctatcgtgtgcagccacgccggctttccttctcgccagatgtgaggtccttttgagggtaagggg |
130 |
Q |
| |
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||||||||||||||||| || |||||||| ||| ||||||| ||||||||| |||| ||||| ||||| ||||||||||||||| | |||||||||| |
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| T |
20476106 |
gacagagagggaaagggaggtgactgccaacggccttatcgtgcgcagccacgtcggcgttcctgttcgccggatgtgaggtcctttcgggggtaagggg |
20476007 |
T |
|
| Q |
131 |
ttcaaacagggtgccagaaacg-ggggaatgagaatgattggcttgatgtga |
181 |
Q |
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| ||| |||||| ||||||||| |||||||| | ||| |||||||||||||| |
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| T |
20476006 |
tccaagcagggttccagaaacggggggaatggggatggttggcttgatgtga |
20475955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 42
Target Start/End: Original strand, 12373670 - 12373700
Alignment:
| Q |
12 |
aagaaacatgagagcgagtgacagagaggga |
42 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
12373670 |
aagaaacatgagagcgagtgacagagaggga |
12373700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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