View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13380_high_6 (Length: 402)
Name: NF13380_high_6
Description: NF13380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13380_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 10 - 383
Target Start/End: Original strand, 20026627 - 20027021
Alignment:
| Q |
10 |
acatcatcatcaacatcttcattagaaactcttgaaagcgaatcaacattaggaagaagaacagcgagattagaacgaagactttcaacaaggttgagtt |
109 |
Q |
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| T |
20026627 |
acatgatcatcaacatcttcattagaaacccttgaaagcgaatcaacattaggaagaagaacagcgagattagaacgaagactttcaacaaggttgagtt |
20026726 |
T |
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| Q |
110 |
tacatgaatgatgtaaagaagagtaaccgcgaaccaaagagtaaacacggtcgaatacgtcttggtcttggatgcagaggatttctctgtcggagagatc |
209 |
Q |
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| T |
20026727 |
tacatgaatgatgtaaagaagagtaaccgcgaaccaaagagtaaacacggtcgaatacgtcttggtcttggatgcagaggatttctctgtcggagagatc |
20026826 |
T |
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| Q |
210 |
gaatgagacgcctttgacgaattcttcgagttgggaggaagagagggaggagatgtttgtagggttttggacgaagagattgttgtt------------- |
296 |
Q |
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| T |
20026827 |
gaatgagacgcctttgacgaattcttcgagttgggaggaagagagggaggagatgtttgtagggttttggactgagagattgttgttgttgttgttgttg |
20026926 |
T |
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| Q |
297 |
--------gttgtcttcggaggatgaatcttgttcgaggtgttggagagtgcgagggaagacgaaggttggagccatggaagagagagaggtttt |
383 |
Q |
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| T |
20026927 |
ttgttgtcgttgtcttcggaggatgaatcttgttcgaggtgttggagagtgcgagggaagacgaaggttggagccatggaagagagagaggtttt |
20027021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 28 - 165
Target Start/End: Complemental strand, 28128908 - 28128771
Alignment:
| Q |
28 |
tcattagaaactcttgaaagcgaatcaacattaggaagaagaacagcgagattagaacgaagactttcaacaaggttgagtttacatgaatgatgtaaag |
127 |
Q |
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||||||||||| |||||||||||| |||||| | |||||||||| ||||| |||| |||||||||||||| | ||||||||| |||||| |||| |
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| T |
28128908 |
tcattagaaacctttgaaagcgaatagacattatggagaagaacagaaagattggaaccgagactttcaacaagatggagtttacaagaatgaggtaagc |
28128809 |
T |
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| Q |
128 |
aagagtaaccgcgaaccaaagagtaaacacggtcgaat |
165 |
Q |
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||| ||| |||||||||||| ||||||| ||||||| |
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| T |
28128808 |
aagcttaaacgcgaaccaaaggttaaacactgtcgaat |
28128771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 28153874 - 28153796
Alignment:
| Q |
31 |
ttagaaactcttgaaagcgaatcaacattaggaagaagaacagcgagattagaacgaagactttcaacaaggttgagtt |
109 |
Q |
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|||||||| |||||||| |||| || |||| ||||||||| | |||||||| | |||||||||||||||||||||| |
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| T |
28153874 |
ttagaaacctttgaaagcaaatcgactttagagagaagaacaacatgattagaatggagactttcaacaaggttgagtt |
28153796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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