View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13380_high_9 (Length: 341)
Name: NF13380_high_9
Description: NF13380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13380_high_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 21 - 307
Target Start/End: Complemental strand, 41921766 - 41921480
Alignment:
| Q |
21 |
gccatacaaccagaagataaggggatggatcatcatgttctcgtggaggatactataaacaaaagttagaaatatgaacatatataactttcatgtgtat |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41921766 |
gccatacaaccagaagataaggggatggatcatcatgttctcgtgaaggatactataaacaaaagttagaaatatgaactaatataactttcatgtgtat |
41921667 |
T |
|
| Q |
121 |
aaaaaagcttactttgtgattattttgacacctacctcagctagaagagggtgattatccgtgaggacataactgaacagataaaggaaaaatgcataag |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41921666 |
aaaaaagcttactttgtgattattttgacacctacctcagctagaagagggtgattatccgtgaggacataactgaacagattaaggaaaaatgcataag |
41921567 |
T |
|
| Q |
221 |
tcttggcatataaagtagtaagtaatttctttaaatttgaaatatctatttgttgttaaaatgttttctcaaaaattaaacaaaact |
307 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41921566 |
tcttggcatataaagtagcaagtaatttctttaaatttgaaatatctatttgttgttaaaatgttttctcaaaaattaaacaaaact |
41921480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 21 - 281
Target Start/End: Complemental strand, 1699099 - 1698822
Alignment:
| Q |
21 |
gccatacaaccagaagataaggggatggatcatcatgttctcgtggaggatactataaacaaaagtt-agaaatatgaac----------------atat |
103 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||| |||| ||||||||||| |||| |
|
|
| T |
1699099 |
gccatataaccagaagataaggggaaggatcatcatgttctcgtggaggatactgtaaaaaaaaaacgagaaatatgaatgtatatatatatatatatat |
1699000 |
T |
|
| Q |
104 |
ataactttcatgtgtataaaaaagcttactttgtgattattttgacacctacctcagctagaagagggtgattatccgtgaggacataactgaacagata |
203 |
Q |
| |
|
||||||||||||||| || || | |||||| ||||||||||||| ||||||||||| ||| ||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
1698999 |
ataactttcatgtgtgtataacaatttacttcgtgattattttgatacctacctcagttaggagaggatgattatccgtgaggacataactgaatagata |
1698900 |
T |
|
| Q |
204 |
aagga--aaaatgcataagtcttggcatataaagtagtaagtaatttctttaaatttgaaatatctatttgttgttaaaa |
281 |
Q |
| |
|
||||| ||||||||| ||||| |||||| |||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
1698899 |
aaggaaaaaaatgcat--gtcttagcatatgaagtagtaagtaatttatttaaatttgaaatatctacatgttgttaaaa |
1698822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 100 - 207
Target Start/End: Complemental strand, 36000744 - 36000637
Alignment:
| Q |
100 |
atatataactttcatgtgtataaaaaagcttactttgtgattattttgacacctacctcagctagaagagggtgattatccgtgaggacataactgaaca |
199 |
Q |
| |
|
|||||||| ||| |||||| || |||| |||||||||||||||||| || ||||||| |||| ||||||||||||||| | || ||||||||||||| |
|
|
| T |
36000744 |
atatataattttgatgtgtgtattaaagtgtactttgtgattattttgggacttacctcaactaggagagggtgattatccttaagaacataactgaaca |
36000645 |
T |
|
| Q |
200 |
gataaagg |
207 |
Q |
| |
|
||||||| |
|
|
| T |
36000644 |
aataaagg |
36000637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 136 - 270
Target Start/End: Complemental strand, 1310097 - 1309963
Alignment:
| Q |
136 |
gtgattattttgacacctacctcagctagaagagggtgattatccgtgaggacataactgaacagataaaggaaaaatgcataagtcttggcatataaag |
235 |
Q |
| |
|
|||||||||||| |||||||| |||| |||||||||| |||||| |||||||||||||| ||||||| |||| | | |||| || |||| |||| |
|
|
| T |
1310097 |
gtgattattttgctacctaccttgactaggagagggtgatcatccgttaggacataactgaatagataaaacaaaattacgtaaggattagcatgcaaag |
1309998 |
T |
|
| Q |
236 |
tagtaagtaatttctttaaatttgaaatatctatt |
270 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
1309997 |
tagtaagtaacttctttaaatttgaaatatctatt |
1309963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 1207710 - 1207759
Alignment:
| Q |
21 |
gccatacaaccagaagataaggggatggatcatcatgttctcgtggagga |
70 |
Q |
| |
|
||||||||| ||||||||||||||| |||||| ||| |||||||||||| |
|
|
| T |
1207710 |
gccatacaagcagaagataaggggaaggatcaacatcatctcgtggagga |
1207759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University