View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13380_low_10 (Length: 368)
Name: NF13380_low_10
Description: NF13380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13380_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 12 - 350
Target Start/End: Complemental strand, 34730916 - 34730578
Alignment:
| Q |
12 |
aagaaaagaagctgcagagaacaactttcacgtcacaatgcaaggcgatgtaagcatcagcctgaagcactccaatcaagtcaatcagttttgtcttcac |
111 |
Q |
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| T |
34730916 |
aagaaaagaagctgcagagaacaactttcacgtcacaatgcaaggcgacgtaagcatcagcctgaagcactccaatcaagtcaatcagttttgtcttcac |
34730817 |
T |
|
| Q |
112 |
gctgtggtaatacttatttttcaatagttttgcagtttatctcagtttctgcttgttatctatgtttgggtgttaaagctgaaaaaatgaactgtggaaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34730816 |
gctgtggtaatacttatttttcaatagttttgcagtttatctcagtttctgcttgttatctatgtttgggtgttaaagctgaaaaaatgaactgtggaaa |
34730717 |
T |
|
| Q |
212 |
tataagaccatgttatgcataccttagttgacaattaacattgctgaatgaaaaatgttttaaaacttgacatgcttaacgtcacatttctttgttgtcc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34730716 |
tataagaccatgttatgcataccttagttgacaattaacattgctgaatgaaaaatgttttaaaacttgacatgcttaacgtcacatttctttgctgtcc |
34730617 |
T |
|
| Q |
312 |
tgcttatttatgcaagagtttaccttgcaagttacaatg |
350 |
Q |
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|||||||||| |||||||||||||||||||||||||||| |
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| T |
34730616 |
tgcttatttacgcaagagtttaccttgcaagttacaatg |
34730578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 20 - 347
Target Start/End: Complemental strand, 34726694 - 34726364
Alignment:
| Q |
20 |
aagctgcagagaacaactttcacgtcacaatgcaaggcgatgtaagcatcagcctgaagcactccaatcaagtcaatcagttttgtctt---cacgctgt |
116 |
Q |
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|||||||||| |||||||||| ||||||||||||||| |||| |||| | | |||| |||||||||| ||||| | |||||||| ||||| || |
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| T |
34726694 |
aagctgcagacgacaactttcaaatcacaatgcaaggcgccgtaaatatcatcgtcaagctgtccaatcaagccaatcggctttgtcttattcacgcagt |
34726595 |
T |
|
| Q |
117 |
ggtaatacttatttttcaatagttttgcagtttatctcagtttctgcttgttatctatgtttgggtgttaaagctgaaaaaatgaactgtggaaatataa |
216 |
Q |
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||||||||||||||||| | |||||||||||||||||||| |||||||||||| |||| ||||||||||||||||| ||| ||| ||||| ||| |
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| T |
34726594 |
ggtaatacttatttttctctgattttgcagtttatctcagttcatgcttgttatctgattttgattgttaaagctgaaaaaacgaaatgtagaaatctaa |
34726495 |
T |
|
| Q |
217 |
gaccatgttatgcataccttagttgacaattaacattgctgaatgaaaaatgttttaaaacttgacatgcttaacgtcacatttctttgttgtcctgctt |
316 |
Q |
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||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||| |||| |||| ||||||||| ||| ||||||| | |||||||| |
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| T |
34726494 |
gaccatgttatgcatgccttagttgactattaacattgctgaatgaaaactgtttgaaaaattgaaatgcttaacaccactcttctttgctctcctgctt |
34726395 |
T |
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| Q |
317 |
atttatgcaagagtttaccttgcaagttaca |
347 |
Q |
| |
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||||| ||||||||| |||||||||||||| |
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| T |
34726394 |
atttactcaagagtttgccttgcaagttaca |
34726364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 38611395 - 38611186
Alignment:
| Q |
12 |
aagaaaagaagctgcagagaacaactttcacgtcacaatgcaaggcgatgtaagcatcagcctgaagcactccaatcaagtcaatcagttttgtcttc-- |
109 |
Q |
| |
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||||| |||||||||||| ||||||||||||||||||| |||| | |||| |||| |||||| | |||||||||||||||||| ||||||||| |
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| T |
38611395 |
aagaagagaagctgcagatgacaactttcacgtcacaatacaagacaccgtaaatatcatcctgaatctgtccaatcaagtcaatcagctttgtcttctt |
38611296 |
T |
|
| Q |
110 |
-acgctgtggtaatacttatttttcaatagttttgcagtttatctcagtttctgcttgttatctatgtttgggtgttaaagctgaaaaaatgaactgtgg |
208 |
Q |
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| |||||||||||| | ||||| || |||||||||| ||| |||||||||||| |||||||| |||| ||||||||||||||||||||| ||| | |
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| T |
38611295 |
catcctgtggtaataccttttttt---tacttttgcagttcatcacagtttctgcttcttatctattattggttgttaaagctgaaaaaatgaaatgtag |
38611199 |
T |
|
| Q |
209 |
aaatataagacca |
221 |
Q |
| |
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||||||||||||| |
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| T |
38611198 |
aaatataagacca |
38611186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 38796057 - 38795971
Alignment:
| Q |
136 |
tagttttgcagtttatctcagtttctgcttgttatctatgtttgggtgttaaagctgaaaaaatgaactgtggaaatataagaccat |
222 |
Q |
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||||||||||||| ||| ||||||||||||||||||||| |||| ||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
38796057 |
tagttttgcagttcatcacagtttctgcttgttatctattattggttgttaaagctgaaaaaatgaaatgtagaaatataagaccat |
38795971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 349
Target Start/End: Complemental strand, 34721503 - 34721236
Alignment:
| Q |
83 |
ccaatcaagtcaatcagttttgtcttc---acgctgtggtaatacttatttttcaatagttttgcagtttatctcagtttctgcttgttatctatgtttg |
179 |
Q |
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||||||||||||||||| ||||||||| || ||||||||||||||||||||| ||| ||| |||||||| | |||||||||||| | | || | |
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| T |
34721503 |
ccaatcaagtcaatcagctttgtcttcgtcaccctgtggtaatacttatttttctttagctttccagtttatacccatttctgcttgttgtttgatttag |
34721404 |
T |
|
| Q |
180 |
ggtgttaaagctgaaaaaatgaactgtggaaatataagaccatgttatgcataccttagttgacaattaacattgctgaatgaaaaatgttttaaaactt |
279 |
Q |
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| ||||||||||||||||| || | ||||| ||| |||||| |||||| | ||||||| ||||||||||||||||||||| ||||| |||| | |
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| T |
34721403 |
gttgttaaagctgaaaaaa--aaaatttgaaatctaaaaccatgctatgcaggctatagttgagtattaacattgctgaatgaaaattgtttgaaaaact |
34721306 |
T |
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| Q |
280 |
gacatgcttaacgtcacatttctttgttgtcctgcttatttatgcaagagtttaccttgcaagttacaat |
349 |
Q |
| |
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| ||||||| | |||| ||||||| | |||||||| ||| |||||| |||||| |||||||||| |
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| T |
34721305 |
taaatgcttaccatcacttttctttacttccctgcttacttacttcagagttaaccttgaaagttacaat |
34721236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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