View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13380_low_13 (Length: 328)
Name: NF13380_low_13
Description: NF13380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13380_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 39568482 - 39568184
Alignment:
| Q |
18 |
acatcactaattagcttatcattttaatggatattcaattgatattttttgacaaaattataagggttgattctatatgactagagttttcttcggtgtc |
117 |
Q |
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| T |
39568482 |
acatcactaattagcttatcattttaatggatattcaattgatattttttgacaaaattataagggttcattctatatgactagagttttcttcggtgtc |
39568383 |
T |
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| Q |
118 |
cctcaataagaaatttaatgattaccaaacatcggcttaataagaaatttaaatcacatcttccgtatatcttatttcgtaagaactgattaagccattc |
217 |
Q |
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| T |
39568382 |
actcaataagaaatttaatgattaccaaacatcggcttaataagaaatttaaatcacatcttccgtatatcttatttcgtaagaactgattaagccattc |
39568283 |
T |
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| Q |
218 |
aataattcagaaaagtacatgaaaacaacataatctttaagcctctaagaacaactttgtttgttatgaggaaaaaatttagaaacaaatttctgatga |
316 |
Q |
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| T |
39568282 |
aataattcagaaaagtacatgaaaacgacataatctttaagcctctaagaacaactttgtttgttatgaggaaaaaatttagaaacaaatttctgatga |
39568184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 129 - 249
Target Start/End: Complemental strand, 39565640 - 39565514
Alignment:
| Q |
129 |
aatttaatgattaccaaacatcggcttaataagaaatttaaatcacatcttccgtatatcttatttcg-------taagaactgattaagccattcaata |
221 |
Q |
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| T |
39565640 |
aatttaatgattaccaaa-atcagcttaataagaaatttaagtcacatcttctgtatgtcttattttgtaagaactaagaactgattaagccattcaata |
39565542 |
T |
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| Q |
222 |
attcagaaaagtacatgaaaacaacata |
249 |
Q |
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| T |
39565541 |
attcagaaaaatacttgaaaacaacata |
39565514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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