View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13380_low_14 (Length: 316)
Name: NF13380_low_14
Description: NF13380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13380_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 112 - 307
Target Start/End: Original strand, 41921273 - 41921468
Alignment:
| Q |
112 |
atgcttcacaatctttagttgcatttcatccaaatgctacaaacagtcatttatcaaaaatgaaaaatgctagtcgcttgaaaactgagcgcacagtgta |
211 |
Q |
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| T |
41921273 |
atgcttcacaatctttagttgcatttcatccaaatgctacaaacagtcatttatcaaaaatgaaaaatgctagtcgcttgaaaactgagcgcacagtgta |
41921372 |
T |
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| Q |
212 |
agtttctcactttcctatattcttatgttatattcccttgtttattgtatttatttatgcaataacgatactagaacaaattcactacttcaagtg |
307 |
Q |
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| T |
41921373 |
agtttctcactttcctatattcttatgttatattcccttgtttattgtatttatttatgcaataacgatactagaacaaattcactacttcaagtg |
41921468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 41921137 - 41921239
Alignment:
| Q |
9 |
gagagagatgaagaaggtattgagagcgatgaagaagatattgaggatattccaacatttaacctcagtagtcaagaatcatcatcatcatgcctgccaa |
108 |
Q |
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| T |
41921137 |
gagagtgacgaagaagatattgagagtgatgaagaagatattgaggatattccaacatttaacatcagtagtcaagaatca---tcatcatgtctgccaa |
41921233 |
T |
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| Q |
109 |
tgtatg |
114 |
Q |
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| T |
41921234 |
tgtatg |
41921239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 41921116 - 41921160
Alignment:
| Q |
9 |
gagagagatgaagaaggtattgagagcgatgaagaagatattgag |
53 |
Q |
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| T |
41921116 |
gagagtgatgaagaagatattgagagtgacgaagaagatattgag |
41921160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 1695370 - 1695489
Alignment:
| Q |
122 |
atctttagttgcatttcatccaaatgctacaaacagtcatttatcaaaaatgaaaaatgctagtcgcttgaaaactgagcgcacagtgtaagtttctcac |
221 |
Q |
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||||||||||||||| |||||||||||||||| || || |||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||| |
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| T |
1695370 |
atctttagttgcattacatccaaatgctacaatcaatcgtttatcaaaaatgaaaaatgctagccgcctgaaaactgagcgtttagtgtaagtttctcac |
1695469 |
T |
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| Q |
222 |
tttcctatattcttatgtta |
241 |
Q |
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| T |
1695470 |
tttcctatattcttatgtta |
1695489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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