View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13380_low_16 (Length: 289)
Name: NF13380_low_16
Description: NF13380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13380_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 55573306 - 55573581
Alignment:
| Q |
1 |
agacaacatggaaagaaaaagatttgatagtttagaatcatggtccatgatattggactctgagaatgtcgaaacgtgggaagcttcaaaggaagatcag |
100 |
Q |
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| T |
55573306 |
agacaacatggaaagaaaaagatttgatagtttagaatcatggtccatgatattggactctgagaatgtcgaaacgtgggaagcttcaaaggaagatcag |
55573405 |
T |
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| Q |
101 |
gaagaatggactgctgatctttctcaacttttcataggtaacaagtttgcgtccggtgctcacagtcgaatttaccgtggaatttacaagcagagagctg |
200 |
Q |
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| T |
55573406 |
gaagaatggactgctgatctttctcaacttttcataggtaacaagtttgcgtccggtgctcacagtcgaatttaccgtggaatttacaagcagagagctg |
55573505 |
T |
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| Q |
201 |
ttgctgttaaaatggtgaggattcctactcagaatgaggagagaagaacattgctagaacagcaattcaagtctga |
276 |
Q |
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| T |
55573506 |
ttgctgttaaaatggtgaggattcctactcagaatgaggagagaagaacattgctagaacagcaattcaagtctga |
55573581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 1359825 - 1360092
Alignment:
| Q |
1 |
agacaacatggaaagaaaaagatttgatagtttagaatcatggtccatgatattggactctgagaatgtcgaaacgtgggaagcttcaaaggaagatcag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||| | |||| |
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| T |
1359825 |
agacaacatggaaagaaaaagatttgatagtttagaatcatggtccatgatattggattttgagaatgtcgaaatgtgggaagcttcaaaggagggtcag |
1359924 |
T |
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| Q |
101 |
gaagaatggactgctgatctttctcaacttttcataggtaacaagtttgcgtccggtgctcacagtcgaatttaccgtggaatttacaagcagagagctg |
200 |
Q |
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| T |
1359925 |
gaagaatggactgctgatctttctcagcttttcatcggtaacaagtttgcgtccggtgctcacagtcggatttaccgtggaatttacaagcagagagctg |
1360024 |
T |
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| Q |
201 |
ttgctgttaaaatggtgaggattcctactcagaatgaggagagaagaacattgctagaacagcaattc |
268 |
Q |
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| T |
1360025 |
ttgctgttaaaatggtgaggattccaactcagaatgaggagagaagaacattgctagaacaacaattc |
1360092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 33035684 - 33035733
Alignment:
| Q |
18 |
aaagatttgatagtttagaatcatggtccatgatattggactctgagaat |
67 |
Q |
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| T |
33035684 |
aaagatttgatagtttagaattatggtccatgatattggactctgagaat |
33035733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 30845148 - 30845084
Alignment:
| Q |
1 |
agacaacatggaaagaaaaagatttgatagtttagaatcatggtccatgatattggactctgagaat |
67 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||| ||||| |
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| T |
30845148 |
agacaacatggaaagaaaaagatttgatagcttagaatcatggtctatg--attggactctaagaat |
30845084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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