View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13380_low_18 (Length: 221)
Name: NF13380_low_18
Description: NF13380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13380_low_18 |
 | |
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| [»] scaffold0090 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 5501893 - 5501709
Alignment:
| Q |
19 |
attgctaaattggaataagcgcctggaaattattgatggaattgctcgagggctgttgtatcttcatcaagattctacactaagaatcatacatagagat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5501893 |
attgctaaattggaataagcgcctggaaattattgatggaattgctcgagggctgttgtatcttcatcaagattctacactaagaatcatacatagagat |
5501794 |
T |
|
| Q |
119 |
atgaaaacaagcaatattcttcttgatattgatatgattccaaagatagcagattttggtttagccagatcatttatgggagacg |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5501793 |
atgaaaacaagcaatattcttcttgatattgatatgattccaaagatagcagattttggtttagccagatcatttatgggagacg |
5501709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 5489046 - 5488862
Alignment:
| Q |
19 |
attgctaaattggaataagcgcctggaaattattgatggaattgctcgagggctgttgtatcttcatcaagattctacactaagaatcatacatagagat |
118 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5489046 |
attgctaaattggattaagcgtctggaaattattgatggaattgctcgagggctgttgtatcttcatcaagattctacactaagaatcatacatagagat |
5488947 |
T |
|
| Q |
119 |
atgaaaacaagcaatattcttcttgatattgatatgattccaaagatagcagattttggtttagccagatcatttatgggagacg |
203 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
5488946 |
atgaaaacaagcaatattcttcttgatgttgatatgatcccaaagatagcagactttggtttagccagatcatttatgggagacg |
5488862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 23 - 203
Target Start/End: Complemental strand, 5524753 - 5524573
Alignment:
| Q |
23 |
ctaaattggaataagcgcctggaaattattgatggaattgctcgagggctgttgtatcttcatcaagattctacactaagaatcatacatagagatatga |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||| | | |
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|
| T |
5524753 |
ctaaattggaataagcgcctggaaattattaatggaattgctcgagggctgctatatcttcatcaagattctacacaaagaatcatacatagagatctca |
5524654 |
T |
|
| Q |
123 |
aaacaagcaatattcttcttgatattgatatgattccaaagatagcagattttggtttagccagatcatttatgggagacg |
203 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
5524653 |
agacaagcaatattcttcttgatattgatatgatcccaaagatatcagattttggtttagccagatcatttatgggagacg |
5524573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 35 - 202
Target Start/End: Original strand, 5855258 - 5855425
Alignment:
| Q |
35 |
aagcgcctggaaattattgatggaattgctcgagggctgttgtatcttcatcaagattctacactaagaatcatacatagagatatgaaaacaagcaata |
134 |
Q |
| |
|
|||||| |||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||| | || |||||||||| |
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|
| T |
5855258 |
aagcgcttggaaattattgatgggattgctcgtgggctgttgtatctgcatcaagattctacactaagaataatacatagagatctcaagacaagcaata |
5855357 |
T |
|
| Q |
135 |
ttcttcttgatattgatatgattccaaagatagcagattttggtttagccagatcatttatgggagac |
202 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5855358 |
ttcttcttgatattgatatgatcccaaagatatcagattttggtttagccagatcatttatgggagac |
5855425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 27 - 203
Target Start/End: Complemental strand, 5483588 - 5483412
Alignment:
| Q |
27 |
attggaataagcgcctggaaattattgatggaattgctcgagggctgttgtatcttcatcaagattctacactaagaatcatacatagagatatgaaaac |
126 |
Q |
| |
|
|||||| ||||||| ||||||||||||| || |||||||| |||||| ||||||| ||||| ||||||||| |||||||||||||||||||| | || || |
|
|
| T |
5483588 |
attggactaagcgcttggaaattattgacgggattgctcgggggctgctgtatctccatcaggattctacattaagaatcatacatagagatctcaagac |
5483489 |
T |
|
| Q |
127 |
aagcaatattcttcttgatattgatatgattccaaagatagcagattttggtttagccagatcatttatgggagacg |
203 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5483488 |
aagcaatattcttcttgatgttgatatgatcccaaagatatcagattttggtttagccagatcatttatgggagacg |
5483412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 42 - 202
Target Start/End: Complemental strand, 20342563 - 20342403
Alignment:
| Q |
42 |
tggaaattattgatggaattgctcgagggctgttgtatcttcatcaagattctacactaagaatcatacatagagatatgaaaacaagcaatattcttct |
141 |
Q |
| |
|
||||||||||| |||| |||||||| ||||| ||||||| |||||||||||||||||| ||||||||||||||||| | || |||||||| |||||||| |
|
|
| T |
20342563 |
tggaaattattaatggtattgctcgggggcttctgtatctccatcaagattctacactacgaatcatacatagagatctcaagacaagcaacattcttct |
20342464 |
T |
|
| Q |
142 |
tgatattgatatgattccaaagatagcagattttggtttagccagatcatttatgggagac |
202 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
20342463 |
tgatattgatatgatcccaaagatatcagattttggtttagccagatcatttatgggagac |
20342403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 27 - 202
Target Start/End: Complemental strand, 5453842 - 5453667
Alignment:
| Q |
27 |
attggaataagcgcctggaaattattgatggaattgctcgagggctgttgtatcttcatcaagattctacactaagaatcatacatagagatatgaaaac |
126 |
Q |
| |
|
|||||| |||||| ||||||||||||| || |||||||| |||||||||||||| ||||| ||||||||| |||||||||| ||||||||| | || || |
|
|
| T |
5453842 |
attggactaagcgtttggaaattattgacggtattgctcgggggctgttgtatctccatcaggattctacattaagaatcattcatagagatctcaagac |
5453743 |
T |
|
| Q |
127 |
aagcaatattcttcttgatattgatatgattccaaagatagcagattttggtttagccagatcatttatgggagac |
202 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
5453742 |
aagcaatattcttcttgatattcatatgatcccaaagatatccgattttggtttagccagatcatttatgggagac |
5453667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 35 - 202
Target Start/End: Original strand, 5803679 - 5803846
Alignment:
| Q |
35 |
aagcgcctggaaattattgatggaattgctcgagggctgttgtatcttcatcaagattctacactaagaatcatacatagagatatgaaaacaagcaata |
134 |
Q |
| |
|
|||||| |||||||||||||||| ||| |||| |||||| | ||||| ||||| |||||||||||||||||||||||||||||| | || |||||||||| |
|
|
| T |
5803679 |
aagcgcttggaaattattgatgggatttctcgggggctgctatatctgcatcaggattctacactaagaatcatacatagagatctcaagacaagcaata |
5803778 |
T |
|
| Q |
135 |
ttcttcttgatattgatatgattccaaagatagcagattttggtttagccagatcatttatgggagac |
202 |
Q |
| |
|
| |||||||||||||||||||| ||||||||| | |||||||| |||||||||||||||||||||||| |
|
|
| T |
5803779 |
tacttcttgatattgatatgatcccaaagatatccgattttggattagccagatcatttatgggagac |
5803846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 27 - 202
Target Start/End: Original strand, 5829354 - 5829529
Alignment:
| Q |
27 |
attggaataagcgcctggaaattattgatggaattgctcgagggctgttgtatcttcatcaagattctacactaagaatcatacatagagatatgaaaac |
126 |
Q |
| |
|
|||||| ||||||| |||||||||||||||| |||||||| |||||| | ||||| ||||||||||| ||| | || ||||||||||||||| | || || |
|
|
| T |
5829354 |
attggactaagcgcttggaaattattgatggtattgctcgtgggctgctttatctccatcaagattcaacattgaggatcatacatagagatctcaagac |
5829453 |
T |
|
| Q |
127 |
aagcaatattcttcttgatattgatatgattccaaagatagcagattttggtttagccagatcatttatgggagac |
202 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||| | |||||||| |||||||||||||||||||||||| |
|
|
| T |
5829454 |
aagcaatatacttcttgatattgatatgatcccaaagatatcggattttggcttagccagatcatttatgggagac |
5829529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 35 - 202
Target Start/End: Original strand, 5850107 - 5850274
Alignment:
| Q |
35 |
aagcgcctggaaattattgatggaattgctcgagggctgttgtatcttcatcaagattctacactaagaatcatacatagagatatgaaaacaagcaata |
134 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||| ||||||| ||||| ||||||||| |||||||||||||||||||| | || || ||||||| |
|
|
| T |
5850107 |
aagcgcttggaaattattgatgggattgctcgagggctgctgtatctccatcaggattctacattaagaatcatacatagagatctcaagaccagcaata |
5850206 |
T |
|
| Q |
135 |
ttcttcttgatattgatatgattccaaagatagcagattttggtttagccagatcatttatgggagac |
202 |
Q |
| |
|
| |||||||||||||||||||| || |||||| | |||||||| |||||||||||||||| ||||||| |
|
|
| T |
5850207 |
tacttcttgatattgatatgatccctaagatatccgattttggattagccagatcatttacgggagac |
5850274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 27 - 201
Target Start/End: Complemental strand, 5445259 - 5445085
Alignment:
| Q |
27 |
attggaataagcgcctggaaattattgatggaattgctcgagggctgttgtatcttcatcaagattctacactaagaatcatacatagagatatgaaaac |
126 |
Q |
| |
|
|||||| |||||| |||||||||||||||| |||||||| |||||| ||||||| ||||| ||||||||| |||||||||| ||||||||| | || || |
|
|
| T |
5445259 |
attggactaagcgtttggaaattattgatggtattgctcgggggctgctgtatctccatcaggattctacattaagaatcattcatagagatctcaagac |
5445160 |
T |
|
| Q |
127 |
aagcaatattcttcttgatattgatatgattccaaagatagcagattttggtttagccagatcatttatgggaga |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| | ||||| ||||||| ||||||||| || ||||| |
|
|
| T |
5445159 |
aagcaatattcttcttgatattgatatgatcccaaagatatccgatttcggtttagtcagatcattcattggaga |
5445085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 177
Target Start/End: Original strand, 1077294 - 1077416
Alignment:
| Q |
55 |
tggaattgctcgagggctgttgtatcttcatcaagattctacactaagaatcatacatagagatatgaaaacaagcaatattcttcttgatattgatatg |
154 |
Q |
| |
|
||||||||| || || ||| | ||||||||||||||||||| | | || ||||||||| ||||| | ||| |||| |||||| | | || | ||||||| |
|
|
| T |
1077294 |
tggaattgcccgtggactgatttatcttcatcaagattctagattgaggatcatacatcgagatctaaaaccaagtaatattttattagacaatgatatg |
1077393 |
T |
|
| Q |
155 |
attccaaagatagcagattttgg |
177 |
Q |
| |
|
| |||||| ||| |||||||||| |
|
|
| T |
1077394 |
aatccaaaaatatcagattttgg |
1077416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 1107547 - 1107647
Alignment:
| Q |
77 |
tatcttcatcaagattctacactaagaatcatacatagagatatgaaaacaagcaatattcttcttgatattgatatgattccaaagatagcagattttg |
176 |
Q |
| |
|
||||||||||||||||||| | | || ||||||||||||||| | ||| |||| || ||| | || |||| |||||||| || || ||| ||||||||| |
|
|
| T |
1107547 |
tatcttcatcaagattctagattgaggatcatacatagagatctaaaaccaagtaacattttgctagataatgatatgaacccgaaaatatcagattttg |
1107646 |
T |
|
| Q |
177 |
g |
177 |
Q |
| |
|
| |
|
|
| T |
1107647 |
g |
1107647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 27 - 202
Target Start/End: Original strand, 25810553 - 25810728
Alignment:
| Q |
27 |
attggaataagcgcctggaaattattgatggaattgctcgagggctgttgtatcttcatcaagattctacactaagaatcatacatagagatatgaaaac |
126 |
Q |
| |
|
|||||| |||||| ||||||||||||| || |||||||| |||||||||||||| ||||| ||||||||| |||||||||| ||||||||| | || || |
|
|
| T |
25810553 |
attggactaagcgtttggaaattattgacggtattgctcgggggctgttgtatctccatcaggattctacattaagaatcattcatagagatctcaagac |
25810652 |
T |
|
| Q |
127 |
aagcaatattcttcttgatattgatatgattccaaagatagcagattttggtttagccagatcatttatgggagac |
202 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
25810653 |
aagcaatattcttcttgatattcatatgatcccaaagatatccgattttggtttagccagatcatttatgggagac |
25810728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 58 - 177
Target Start/End: Complemental strand, 22689472 - 22689353
Alignment:
| Q |
58 |
aattgctcgagggctgttgtatcttcatcaagattctacactaagaatcatacatagagatatgaaaacaagcaatattcttcttgatattgatatgatt |
157 |
Q |
| |
|
|||||||||||| || | ||||||||||||||||||| | |||||||||||||||| ||| | || ||||||||||| | | || | |||||||| | |
|
|
| T |
22689472 |
aattgctcgaggacttctttatcttcatcaagattctatattaagaatcatacatagggatctaaaggcaagcaatattttagtagacaatgatatgaat |
22689373 |
T |
|
| Q |
158 |
ccaaagatagcagattttgg |
177 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
22689372 |
ccaaagatttcagattttgg |
22689353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 183
Target Start/End: Complemental strand, 4151018 - 4150885
Alignment:
| Q |
50 |
attgatggaattgctcgagggctgttgtatcttcatcaagattctacactaagaatcatacatagagatatgaaaacaagcaatattcttcttgatattg |
149 |
Q |
| |
|
||||| ||||| |||||||| | ||||||||||| ||| || | |||||| ||||||||||||||| | ||| ||||||| || | ||||||| || |
|
|
| T |
4151018 |
attgaaggaatagctcgaggtataatgtatcttcatagagactcgagactaaggatcatacatagagatctaaaagcaagcaacatcttacttgatagtg |
4150919 |
T |
|
| Q |
150 |
atatgattccaaagatagcagattttggtttagc |
183 |
Q |
| |
|
| ||||||||||| ||| |||| || |||||||| |
|
|
| T |
4150918 |
acatgattccaaaaatatcagacttcggtttagc |
4150885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 135
Target Start/End: Original strand, 20303598 - 20303686
Alignment:
| Q |
47 |
attattgatggaattgctcgagggctgttgtatcttcatcaagattctacactaagaatcatacatagagatatgaaaacaagcaatat |
135 |
Q |
| |
|
||||| || |||||||||||||| ||||||||||||| |||||| | ||||||||| ||||| |||||| |||| ||||| ||||| |
|
|
| T |
20303598 |
attatagaaggaattgctcgaggattgttgtatcttcacagagattcgagactaagaattatacacagagatttgaagacaagtaatat |
20303686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 124
Target Start/End: Complemental strand, 8418 - 8349
Alignment:
| Q |
55 |
tggaattgctcgagggctgttgtatcttcatcaagattctacactaagaatcatacatagagatatgaaa |
124 |
Q |
| |
|
|||||||||||| ||||| | ||||||||||||||||| | | || |||||||||| |||||| ||||| |
|
|
| T |
8418 |
tggaattgctcgggggcttctttatcttcatcaagattcaagattacgaatcatacacagagatctgaaa |
8349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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