View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13380_low_3 (Length: 509)
Name: NF13380_low_3
Description: NF13380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13380_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 147 - 494
Target Start/End: Complemental strand, 55175053 - 55174706
Alignment:
| Q |
147 |
ttcactctagatgtcagcttttattgaatataaacaagtcaacacttatttaagcaaagtacaaataaaaaagataatgttacttgagtttcggtgtttc |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55175053 |
ttcactctagatgtcagcttttattgaatataaacaagtcaacacttatttaagcaaagtacaaataaaaaagataatgttacttgagtttcggtgtttc |
55174954 |
T |
|
| Q |
247 |
tttcccttacctgagcttcgagcatagatattttttccatgagctccgcattcttcttcctttccctttccaactcggctgaaatctgagcaacattgtt |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
55174953 |
tttcccttacctgagcttcgagcatagatattttttccatgagctccgcattcttcttcctttccctttccaactcggctgaaatctgagaaacatcgtt |
55174854 |
T |
|
| Q |
347 |
gacattatctccattcacttcttgttctatatcacaaaatgtagaggcattgaccaaggtagcacaggattgatgttctaccattgaggactaagcaatt |
446 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55174853 |
gacattatctccattcacttcttgttctatatcacaaaatgtagaggcattgaccaaggtagcacaggattgatgttctaccattgaggactaagcaatt |
55174754 |
T |
|
| Q |
447 |
aattttatctgaaaatctctggttttggactggaaattaagtcaaatg |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55174753 |
aattttatctgaaaatctctggttttggactggaaattaagtcaaatg |
55174706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 214 - 341
Target Start/End: Complemental strand, 55178669 - 55178544
Alignment:
| Q |
214 |
aaaaagataatgttacttgagtttcggtgtttctttcccttacctgagcttcgagcatagatattttttccatgagctccgcattcttcttcctttccct |
313 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||| ||| ||||||||| |
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| T |
55178669 |
aaaaagataatgttac--gagtttcggtgtttctttcccttatctgagcttcgtgcattgatattttttccatgagctccgcatttttcagcctttccct |
55178572 |
T |
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| Q |
314 |
ttccaactcggctgaaatctgagcaaca |
341 |
Q |
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||||||||| |||||||| ||||||| |
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| T |
55178571 |
ttccaactccaatgaaatctcagcaaca |
55178544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 263 - 385
Target Start/End: Complemental strand, 50906856 - 50906734
Alignment:
| Q |
263 |
ttcgagcatagatattttttccatgagctccgcattcttcttcctttccctttccaactcggctgaaatctgagcaacattgttgac-attatctccatt |
361 |
Q |
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||||||||| ||||||||| |||||| |||| ||||||||| ||||||||||||||||||||||||||| |||||||| |||||| |||||||||||| |
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| T |
50906856 |
ttcgagcatcgatattttt-ccatgatctccacattcttctgcctttccctttccaactcggctgaaatacgagcaacaacgttgacaattatctccatt |
50906758 |
T |
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| Q |
362 |
cacttcttgttctatatcacaaaa |
385 |
Q |
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| |||||| |||||| |||||||| |
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| T |
50906757 |
cgcttcttattctatgtcacaaaa |
50906734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 384 - 440
Target Start/End: Complemental strand, 50952849 - 50952792
Alignment:
| Q |
384 |
aatgtagaggcattgaccaa-ggtagcacaggattgatgttctaccattgaggactaa |
440 |
Q |
| |
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|||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
50952849 |
aatgcagaggcattgaccaaaggtagcacatgattgatgttctaccattgaggactaa |
50952792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 50906950 - 50906872
Alignment:
| Q |
147 |
ttcactctagatgtcagcttttattgaatataaaca-agtcaacacttatttaagcaaagtacaaataaaaaagataat |
224 |
Q |
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|||||||||||||| ||||||| |||| |||||| |||||||||||||||||| ||||||| ||||| ||||||||| |
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| T |
50906950 |
ttcactctagatgttagcttttgttgattataaaatgagtcaacacttatttaagtaaagtacgaataagaaagataat |
50906872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 4111539 - 4111657
Alignment:
| Q |
18 |
ctttgttaattgtttgcaggaatcatctagtacatacgagcttacagaggtaagcacatgaggcaaacttggaaggcacaatcttcatcttcatatcaaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4111539 |
ctttgttaattgtttgcaggaatcatctagtacatacgagcttacagaggtaagctcgggaggcaaacttggaaggcacaatcttcatcttcatatcaaa |
4111638 |
T |
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| Q |
118 |
caactaggttcggacacag |
136 |
Q |
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||||||||||||||||||| |
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| T |
4111639 |
caactaggttcggacacag |
4111657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 4768439 - 4768327
Alignment:
| Q |
18 |
ctttgttaattgtttgcaggaatcatctagtacatacgagcttacagaggtaagcacatgaggcaaacttggaaggcacaatcttcatcttcatatcaaa |
117 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||| |
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| T |
4768439 |
ctttggtaattgtttgcaggaatcatctagtacatacgagcttacagaggtaagcacaggaggcaaacttggaagacacaatct------tcatatcaaa |
4768346 |
T |
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| Q |
118 |
caactaggttcggacacag |
136 |
Q |
| |
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||||||||| ||||||||| |
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| T |
4768345 |
caactaggtccggacacag |
4768327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 4383264 - 4383186
Alignment:
| Q |
18 |
ctttgttaattgtttgcaggaatcatctagtacatacgagcttacagaggtaagcacatgaggcaaacttggaaggcac |
96 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
4383264 |
ctttgttaattgtttgcaggaatcatctagtacatacgagcttacagaggtaagctcgggaggcaaacttggaaggcac |
4383186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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