View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13380_low_4 (Length: 483)
Name: NF13380_low_4
Description: NF13380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13380_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 26 - 399
Target Start/End: Complemental strand, 22719405 - 22719033
Alignment:
| Q |
26 |
catatggtccaatctccaggggtgaagcagagacaattgtatgtctaggaatggtctggaaaaatccagacttttgcaacatgcactctaaataataccc |
125 |
Q |
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| T |
22719405 |
catatggtccaatctccaggggttaagcagagacaattgtatgtctaggaatggcatg-aaaaatccagacttttgcaacatgcactctaaataataccc |
22719307 |
T |
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| Q |
126 |
caccatgcgaggttaatatctgatcctaccagagtagacgctgatgttctagaatgaatgtgcgttttagcgagcgacatatggttaaaagacgcaatca |
225 |
Q |
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| T |
22719306 |
caccatgcgaggttaatatctgatcctaccagagtagacgctgatgttctagaatgaatgtgcgttttagcgagcgacatatggttaaaagacgcaatca |
22719207 |
T |
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| Q |
226 |
ttcactaacaaccggtccaggtcctctcggtaaaggtttgtgacaatgagacccttaagagatgtaaacatgttagcacgcgggtgtcgattctccatgt |
325 |
Q |
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| T |
22719206 |
ttcactaacaaccggtccaagtcctctcggtaaaggtttgtgacaatgagacccttaagagatgtaaacatgttagcacgcgggtgtcgattctccatgt |
22719107 |
T |
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| Q |
326 |
atccttcctcaaaatccttggctccaacaccccaaaagtgttgaaatgtttatgccataatcaatatataataa |
399 |
Q |
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| T |
22719106 |
atccttcctcaaaatccttggctccaacaccccaaaagtgttgaaatgtttatgccataatcaatatataataa |
22719033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 425 - 469
Target Start/End: Complemental strand, 22719025 - 22718981
Alignment:
| Q |
425 |
acaacatagtctatttcatctttgaagttatataaagaaccatgt |
469 |
Q |
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| T |
22719025 |
acaacatagtctatttcatctttaaagttatataaagaaccatgt |
22718981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 425
Target Start/End: Complemental strand, 22718906 - 22718877
Alignment:
| Q |
396 |
ataaaccatctccaaatcacgaaaatacta |
425 |
Q |
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| T |
22718906 |
ataaaccatctccaaatcacgaaaatacta |
22718877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 277 - 352
Target Start/End: Original strand, 36659396 - 36659469
Alignment:
| Q |
277 |
cccttaagagatgtaaacatgttagcacgcgggtgtcgattctccatgtatccttcctcaaaatccttggctccaa |
352 |
Q |
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|||||||| ||||||||||| | |||| |||||||||| ||||||||| |||||||||||||||||||| |||| |
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| T |
36659396 |
cccttaagcgatgtaaacatc--accacgtgggtgtcgatcctccatgtacccttcctcaaaatccttggccccaa |
36659469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 346
Target Start/End: Original strand, 32079271 - 32079363
Alignment:
| Q |
254 |
ggtaaaggtttgtgacaatgagacccttaagagatgtaaacatgttagcacgcgggtgtcgattctccatgtatccttcctcaaaatccttgg |
346 |
Q |
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||||| |||||||||| ||| || ||||||| | ||||||||| || |||| | |||||||| ||||||||| |||| |||||||||||||| |
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| T |
32079271 |
ggtaagggtttgtgaccatgtgatccttaagcggtgtaaacatcctaacacgtgagtgtcgatcctccatgtacccttactcaaaatccttgg |
32079363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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