View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13380_low_5 (Length: 472)
Name: NF13380_low_5
Description: NF13380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13380_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 19 - 466
Target Start/End: Complemental strand, 10760555 - 10760108
Alignment:
| Q |
19 |
ggattggacaacgtacaatttgttcgtgaagcctaatcgagtaaagttgaaccggttcttgagtgagacgaggttttgagtcatcatctgaagagtaaac |
118 |
Q |
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| T |
10760555 |
ggattggacaacgtacaatttgttcgtgaagcctaatcgagtaaagttgaaccggttcttgagtgagacgaggttttgagtcatgatctgaagagtaaac |
10760456 |
T |
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| Q |
119 |
acattgaaggtcatgtttggtgtgatagcgaaaagataaagggtagtttaagaacattaaaacatgatcaggaagcataactgtttcccgaattgtgatt |
218 |
Q |
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| T |
10760455 |
acattgaaggtcacgtttggtgtgatagcgaaaagataaagggtagtttaagaaaattaaaacatgatcaggaagcaaaactgtttcccgaattgtgatt |
10760356 |
T |
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| Q |
219 |
tggggtggcactggagttggccatttcaaagctgcaattgggatgtgaaatcgagggaggtagaaggggtggatggatgaaataattagggaggtaaaga |
318 |
Q |
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| T |
10760355 |
tggggtggcactggagttggccatttcaaagctgcaattgggatgtgaaatcgagggaggtagaaggggtggatggatgaaataattagggaggtaaaga |
10760256 |
T |
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| Q |
319 |
taatggaagataagacaaccacaatagtgaaccagaagaatgtgctccatgaaatggctctgctatgttttctatgatctttcatgagagaaacccaaaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10760255 |
taatggaagataagacaaccacaatagtgaaccaaaagaatgtgctccatgaaatggctctgctatgttttctatgatctttcatgagagaaacccaaaa |
10760156 |
T |
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| Q |
419 |
cgagaagaaaaatgtaatagtaatgttctttgggttgcttcatctcac |
466 |
Q |
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| T |
10760155 |
cgagaagaaaaatgtaatagtaatgttctttgggttgcttcatgtcac |
10760108 |
T |
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