View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13380_low_6 (Length: 457)
Name: NF13380_low_6
Description: NF13380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13380_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 37216077 - 37216524
Alignment:
| Q |
1 |
ctctttctccacccttcatctcagataaaacaataacaataataaccttgcaacctttgtattttaccccaatagacttatcaatccttcatgcattcat |
100 |
Q |
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| T |
37216077 |
ctctttctccacccttcatcttagataaaacaataacaataataaccttgcaacctttgtattttaccccaatagacttatcaatccttcatgcat-cat |
37216175 |
T |
|
| Q |
101 |
ccattgtgacttcatgtttatcacgtaaaaccatcaaaattttcatatcacaattaaccgataaataagaactactagaagataattgaacccctgttac |
200 |
Q |
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| T |
37216176 |
ctattgtgacttcatgtttatcacgtaaaaccatcaaaattttcatatcacaattaaccgataaataagaactactagaagataattgaacccctgttac |
37216275 |
T |
|
| Q |
201 |
cttcagccttagatgaatcataaacgactttcaacattttccctctacttctctttaatgttttaaacataacttttatatccttactcgagagtcgcat |
300 |
Q |
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|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37216276 |
cttcagccttaggtgaatcataaacgactttcaacatgttccctctacttctctttaatgttttaaacataacttttatatccttactcgagagtcgcat |
37216375 |
T |
|
| Q |
301 |
tattttccgtagaccattgaatggaattttctcgtgcctaccatgatccttcttggttgtacaaacaccactggactctccttgactacctttcatcgtt |
400 |
Q |
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|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37216376 |
tattttccgtagaccattgagtggagttttctcgtgcctaccatgatccttcttggttgtacaaacaccaccggactctccttgactacctttcatcgtt |
37216475 |
T |
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| Q |
401 |
actgaaccccattaagtctcctttgcacaacagaagaaaaaacaataca |
449 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37216476 |
actgaaccccattaagtctcctttgcacagcagaagaaaaaacaataca |
37216524 |
T |
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