View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13381_high_11 (Length: 437)

Name: NF13381_high_11
Description: NF13381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13381_high_11
NF13381_high_11
[»] chr7 (8 HSPs)
chr7 (17-437)||(33674954-33675374)
chr7 (19-106)||(33674839-33674926)
chr7 (18-138)||(33674523-33674640)
chr7 (17-106)||(33674609-33674695)
chr7 (17-106)||(33674723-33674809)
chr7 (89-138)||(33674939-33674988)
chr7 (90-138)||(33674823-33674871)
chr7 (70-151)||(33674488-33674569)


Alignment Details
Target: chr7 (Bit Score: 409; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 17 - 437
Target Start/End: Original strand, 33674954 - 33675374
Alignment:
Q  17 acttctgggtgtccttccgcttcaattggaaattctactgtaagcttgcaaactcattcgcatgctcaggattatattaaagctaatactactggatgtc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33674954 acttctgggtgtccttccgcttcaattggaaattctactgtaagcttgcaaactcattcgcatgctcaggattatattaaagctaatactactggatgtc 33675053  T
Q  117 cttctgcttcaattggaaattcagttataagattgaaagctccatcctcggctgcattttatcctcagaataacttatcacgcagtaaagcttctcatag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33675054 cttctgcttcaattggaaattcagttataagattgaaagctccatcctcggctgcattttatcctcagaataacttatcacgcagtaaagcttctcatag 33675153  T
Q  217 ttctattcatattcctgcttcattgccagtaagtaaaatcggcccaatacaattgtgaaaattgtttatcttgcactgttgctgcagagcctgtttggtt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33675154 ttctattcatattcctgcttcattgccagtaagtaaaatcggcccaatacaattgtgaaaattgtttatcttgcactgttgctgcagagcctgtttggtt 33675253  T
Q  317 taggtcttagatgggttctgaatattcaaaaccgcattggaggaaaaattaatagcttgaatttttccattaacagtctttgggttatatgcctcatgga 416  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33675254 taggtcttagatgtgttctggatattcaaaaccgcattggaggaaaaattaatagcttgaatttttacattaacagtctttgggttatatgcctcatgga 33675353  T
Q  417 aaataattgtccaagaatatc 437  Q
    |||||||||||||||||||||    
T  33675354 aaataattgtccaagaatatc 33675374  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 33674839 - 33674926
Alignment:
Q  19 ttctgggtgtccttccgcttcaattggaaattctactgtaagcttgcaaactcattcgcatgctcaggattatattaaagctaatact 106  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33674839 ttctgggtgtccttctgcttcaattggaaattctactgtaagattgcaaactcattcgcatgctcaggattatattaaagctaatact 33674926  T

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Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 33674523 - 33674640
Alignment:
Q  18 cttctgggtgtccttccgcttcaattggaaattctactgtaagcttgcaaactcattcgcatgctcaggattatattaaagctaatactactggatgtcc 117  Q
    ||||||||||| ||||  |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||| |||| ||||     
T  33674523 cttctgggtgtacttctacttcaattggaaattctactataagattgcaaactcattcgcatgctcaggattatatcaaagctaatacttctgggtgtc- 33674621  T
Q  118 ttctgcttcaattggaaattc 138  Q
      |||||||||||||||||||    
T  33674622 --ctgcttcaattggaaattc 33674640  T

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Target: chr7; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 33674609 - 33674695
Alignment:
Q  17 acttctgggtgtccttccgcttcaattggaaattctactgtaagcttgcaaactcattcgcatgctcaggattatattaaagctaatact 106  Q
    |||||||||||||||   |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  33674609 acttctgggtgtcct---gcttcaattggaaattctactgtaaaattgcaaactcattcgcatgctcaggattatattaaagctaatact 33674695  T

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Target: chr7; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 33674723 - 33674809
Alignment:
Q  17 acttctgggtgtccttccgcttcaattggaaattctactgtaagcttgcaaactcattcgcatgctcaggattatattaaagctaatact 106  Q
    |||||||||||||||   |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  33674723 acttctgggtgtcct---gcttcaattggaaattctactgtaaaattgcaaactcattcgcatgctcaggattatattaaagctaatact 33674809  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 33674939 - 33674988
Alignment:
Q  89 tatattaaagctaatactactggatgtccttctgcttcaattggaaattc 138  Q
    ||||| |||||||||||| |||| |||||||| |||||||||||||||||    
T  33674939 tatatcaaagctaatacttctgggtgtccttccgcttcaattggaaattc 33674988  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 33674823 - 33674871
Alignment:
Q  90 atattaaagctaatactactggatgtccttctgcttcaattggaaattc 138  Q
    |||| |||||||||| | |||| ||||||||||||||||||||||||||    
T  33674823 atatcaaagctaatagttctgggtgtccttctgcttcaattggaaattc 33674871  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 151
Target Start/End: Original strand, 33674488 - 33674569
Alignment:
Q  70 tcattcgcatgctcaggattatattaaagctaatactactggatgtccttctgcttcaattggaaattcagttataagattg 151  Q
    |||||| || ||||| |||| ||| ||||||||| || |||| ||| ||||| ||||||||||||||||   ||||||||||    
T  33674488 tcattctcaagctcatgattctatcaaagctaatgcttctgggtgtacttctacttcaattggaaattctactataagattg 33674569  T

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