View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13381_high_12 (Length: 416)

Name: NF13381_high_12
Description: NF13381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13381_high_12
NF13381_high_12
[»] chr4 (29 HSPs)
chr4 (163-404)||(50196675-50196923)
chr4 (162-404)||(8111180-8111429)
chr4 (163-404)||(72279-72518)
chr4 (289-396)||(50020312-50020419)
chr4 (160-404)||(46439355-46439604)
chr4 (142-269)||(50020129-50020257)
chr4 (292-404)||(50278484-50278594)
chr4 (315-404)||(44674461-44674549)
chr4 (298-404)||(51492378-51492483)
chr4 (292-404)||(37016200-37016310)
chr4 (315-404)||(49168875-49168964)
chr4 (292-404)||(1305724-1305835)
chr4 (292-404)||(40355009-40355121)
chr4 (315-404)||(30723353-30723442)
chr4 (315-404)||(31425096-31425185)
chr4 (292-404)||(21018193-21018304)
chr4 (109-202)||(44680074-44680171)
chr4 (102-197)||(8111420-8111519)
chr4 (154-207)||(9013864-9013917)
chr4 (154-202)||(31421731-31421779)
chr4 (111-185)||(34530786-34530864)
chr4 (111-197)||(50196915-50197005)
chr4 (319-385)||(21534865-21534929)
chr4 (151-202)||(44561330-44561381)
chr4 (162-199)||(955825-955862)
chr4 (153-202)||(13173258-13173307)
chr4 (162-199)||(19073658-19073695)
chr4 (154-202)||(6181791-6181839)
chr4 (162-198)||(16983556-16983592)
[»] chr3 (38 HSPs)
chr3 (164-404)||(16861216-16861466)
chr3 (106-404)||(49265761-49266080)
chr3 (176-404)||(50759153-50759390)
chr3 (166-404)||(48891862-48892109)
chr3 (164-404)||(41615600-41615859)
chr3 (166-401)||(44233045-44233303)
chr3 (162-404)||(6928467-6928715)
chr3 (162-404)||(48566162-48566412)
chr3 (292-404)||(16646834-16646945)
chr3 (1-98)||(258233-258330)
chr3 (292-404)||(600205-600315)
chr3 (292-404)||(47070770-47070880)
chr3 (292-404)||(50213759-50213869)
chr3 (162-269)||(17561818-17561925)
chr3 (316-404)||(17561965-17562054)
chr3 (315-404)||(9473618-9473706)
chr3 (152-269)||(30252589-30252708)
chr3 (292-404)||(52388101-52388211)
chr3 (292-404)||(2648154-2648265)
chr3 (292-404)||(36133942-36134054)
chr3 (188-269)||(42804488-42804569)
chr3 (315-404)||(46697917-46698006)
chr3 (292-404)||(2271657-2271764)
chr3 (315-404)||(50477386-50477474)
chr3 (104-197)||(16861100-16861197)
chr3 (104-202)||(41612339-41612441)
chr3 (104-197)||(17561730-17561827)
chr3 (153-198)||(6928731-6928776)
chr3 (109-190)||(31951229-31951315)
chr3 (154-202)||(50481383-50481431)
chr3 (338-404)||(4005061-4005127)
chr3 (149-187)||(48892140-48892178)
chr3 (162-199)||(6489362-6489399)
chr3 (151-180)||(7839521-7839550)
chr3 (109-176)||(16611076-16611147)
chr3 (109-176)||(22048106-22048177)
chr3 (153-202)||(30947653-30947702)
chr3 (153-202)||(52391393-52391441)
[»] chr7 (31 HSPs)
chr7 (104-404)||(47521388-47521697)
chr7 (162-404)||(16680810-16681060)
chr7 (162-404)||(17655046-17655296)
chr7 (166-404)||(27450176-27450411)
chr7 (291-404)||(19801851-19801964)
chr7 (163-269)||(9491468-9491574)
chr7 (316-404)||(36980891-36980979)
chr7 (166-269)||(47669671-47669774)
chr7 (292-404)||(5538146-5538257)
chr7 (315-404)||(34742057-34742145)
chr7 (292-404)||(10522175-10522286)
chr7 (292-404)||(13323378-13323486)
chr7 (292-401)||(17838298-17838406)
chr7 (162-256)||(19804409-19804503)
chr7 (315-404)||(35606995-35607084)
chr7 (315-404)||(41883904-41883993)
chr7 (166-243)||(11100413-11100490)
chr7 (313-374)||(11100351-11100409)
chr7 (104-202)||(5541543-5541645)
chr7 (153-200)||(16674793-16674840)
chr7 (153-200)||(17649161-17649208)
chr7 (109-202)||(45256963-45257060)
chr7 (153-202)||(9491432-9491481)
chr7 (153-202)||(17465713-17465762)
chr7 (153-202)||(17587452-17587501)
chr7 (151-203)||(48590338-48590390)
chr7 (104-197)||(19804494-19804591)
chr7 (162-199)||(37340335-37340372)
chr7 (153-202)||(43032998-43033047)
chr7 (154-202)||(10168258-10168306)
chr7 (154-202)||(10175783-10175831)
[»] chr8 (28 HSPs)
chr8 (162-404)||(20859364-20859618)
chr8 (195-404)||(39831240-39831460)
chr8 (161-385)||(40075164-40075396)
chr8 (174-404)||(35554930-35555174)
chr8 (184-404)||(52424-52652)
chr8 (318-404)||(41239175-41239260)
chr8 (315-404)||(34367234-34367322)
chr8 (291-403)||(34819213-34819324)
chr8 (315-404)||(22088-22177)
chr8 (315-404)||(1055890-1055979)
chr8 (315-404)||(23018891-23018980)
chr8 (315-404)||(26662811-26662900)
chr8 (315-390)||(15033365-15033440)
chr8 (104-202)||(20854588-20854690)
chr8 (213-269)||(34819110-34819166)
chr8 (153-198)||(35555436-35555481)
chr8 (154-202)||(26659479-26659527)
chr8 (162-201)||(17924286-17924325)
chr8 (112-197)||(20859609-20859698)
chr8 (156-214)||(5680405-5680463)
chr8 (109-185)||(22547445-22547525)
chr8 (315-352)||(21999-22036)
chr8 (315-352)||(1056031-1056068)
chr8 (162-199)||(1114776-1114813)
chr8 (153-202)||(7340091-7340140)
chr8 (104-179)||(22550888-22550967)
chr8 (142-179)||(44727528-44727565)
chr8 (154-202)||(2712427-2712475)
[»] chr1 (32 HSPs)
chr1 (171-404)||(35255891-35256135)
chr1 (166-403)||(51337249-51337497)
chr1 (157-404)||(45828917-45829175)
chr1 (109-271)||(47505816-47505982)
chr1 (162-404)||(47661206-47661456)
chr1 (315-404)||(16282019-16282107)
chr1 (315-404)||(19521920-19522008)
chr1 (315-404)||(52805221-52805309)
chr1 (292-404)||(31780269-31780379)
chr1 (292-401)||(21144295-21144402)
chr1 (315-404)||(50617515-50617603)
chr1 (320-404)||(47505692-47505778)
chr1 (315-404)||(94721-94810)
chr1 (315-404)||(470731-470819)
chr1 (292-404)||(19159381-19159492)
chr1 (315-404)||(8548447-8548536)
chr1 (315-404)||(26879073-26879162)
chr1 (292-404)||(13636589-13636700)
chr1 (315-396)||(3728941-3729022)
chr1 (292-401)||(22527358-22527466)
chr1 (104-202)||(21140996-21141098)
chr1 (155-201)||(38119607-38119653)
chr1 (109-202)||(50343968-50344065)
chr1 (153-202)||(3983111-3983160)
chr1 (162-199)||(6562164-6562201)
chr1 (162-199)||(22345293-22345330)
chr1 (153-202)||(31945861-31945910)
chr1 (153-202)||(45330878-45330927)
chr1 (151-179)||(29424402-29424430)
chr1 (151-179)||(29438043-29438071)
chr1 (155-207)||(38127485-38127537)
chr1 (153-197)||(47661473-47661517)
[»] chr2 (32 HSPs)
chr2 (289-404)||(36653096-36653211)
chr2 (104-269)||(36652877-36653046)
chr2 (300-404)||(6637690-6637794)
chr2 (292-404)||(10825520-10825630)
chr2 (166-269)||(40539001-40539104)
chr2 (162-264)||(6637593-6637695)
chr2 (292-404)||(29398207-29398317)
chr2 (292-378)||(32953032-32953116)
chr2 (292-404)||(39950831-39950942)
chr2 (315-404)||(5355335-5355424)
chr2 (315-404)||(30493565-30493654)
chr2 (315-404)||(43536308-43536397)
chr2 (292-404)||(28471883-28471995)
chr2 (325-385)||(16327621-16327679)
chr2 (104-202)||(29401605-29401707)
chr2 (153-269)||(16327439-16327559)
chr2 (162-201)||(17420599-17420638)
chr2 (104-197)||(6637505-6637602)
chr2 (104-202)||(20937868-20937971)
chr2 (153-202)||(213452-213501)
chr2 (162-199)||(3943195-3943232)
chr2 (153-202)||(10624465-10624514)
chr2 (153-202)||(18003272-18003321)
chr2 (157-202)||(31974247-31974292)
chr2 (153-202)||(39793987-39794036)
chr2 (153-202)||(39800652-39800701)
chr2 (162-199)||(41500237-41500274)
chr2 (151-179)||(2648820-2648848)
chr2 (154-202)||(9088737-9088785)
chr2 (154-202)||(15831152-15831200)
chr2 (121-179)||(29407910-29407972)
chr2 (155-203)||(40221129-40221177)
[»] chr6 (19 HSPs)
chr6 (166-404)||(18001276-18001520)
chr6 (163-404)||(24085289-24085536)
chr6 (1-98)||(27224106-27224203)
chr6 (292-404)||(3502325-3502435)
chr6 (292-404)||(31771401-31771511)
chr6 (292-404)||(22304603-22304714)
chr6 (315-404)||(30826230-30826319)
chr6 (162-385)||(3384788-3385016)
chr6 (190-269)||(32643358-32643437)
chr6 (166-243)||(17996635-17996712)
chr6 (313-374)||(17996716-17996774)
chr6 (190-269)||(32641366-32641444)
chr6 (104-202)||(3501122-3501224)
chr6 (147-179)||(7361209-7361241)
chr6 (151-179)||(9048097-9048125)
chr6 (151-179)||(9049107-9049135)
chr6 (153-197)||(24085253-24085297)
chr6 (163-207)||(24721962-24722006)
chr6 (154-202)||(30829651-30829699)
[»] chr5 (20 HSPs)
chr5 (162-404)||(5200110-5200370)
chr5 (166-404)||(19227002-19227247)
chr5 (292-404)||(38407448-38407558)
chr5 (292-404)||(7761902-7762014)
chr5 (221-404)||(40622530-40622720)
chr5 (291-385)||(511225-511317)
chr5 (162-280)||(511081-511199)
chr5 (292-404)||(8577132-8577243)
chr5 (292-404)||(41799432-41799540)
chr5 (166-269)||(8698938-8699041)
chr5 (292-404)||(8256-8367)
chr5 (292-404)||(27662371-27662482)
chr5 (292-404)||(30708411-30708522)
chr5 (315-404)||(28238345-28238434)
chr5 (104-192)||(5200366-5200458)
chr5 (104-204)||(38408465-38408569)
chr5 (158-201)||(36503102-36503145)
chr5 (153-202)||(30705161-30705210)
chr5 (153-203)||(13838423-13838473)
chr5 (147-201)||(42937223-42937277)
[»] scaffold0199 (1 HSPs)
scaffold0199 (315-401)||(12727-12812)
[»] scaffold0341 (1 HSPs)
scaffold0341 (162-199)||(17354-17391)


Alignment Details
Target: chr4 (Bit Score: 158; Significance: 6e-84; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 163 - 404
Target Start/End: Complemental strand, 50196923 - 50196675
Alignment:
Q  163 cagttaactaccgaggattttctcggcagtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttca 262  Q
    |||||||||| ||||||||| ||||| | ||||||| ||||||||| ||||||||||||||||| || || |||||||||||||||||||||||||||||    
T  50196923 cagttaactatcgaggatttcctcggtaataaactgtcgaagcgtcctgaagccaagacagaggtaggagcttcatttcctgaacctgcaatgtgtttca 50196824  T
Q  263 aacacaa-------catatgtacctgnnnnnnnatgcataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacattt 355  Q
    |||||||       |||||||||||        ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  50196823 aacacaaaatacaacatatgtacctttttttttatgcataacggttcaaatggcaacacaaatattggcgcaaatgcataacttaattaaaccaacattt 50196724  T
Q  356 ttataccattaaacaaagtaaaatatcccatgaaattaaaagtaatgtc 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  50196723 ttataccattaaacaaagtaaaatatcccatgaaattaaaagtaatgtc 50196675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 162 - 404
Target Start/End: Complemental strand, 8111429 - 8111180
Alignment:
Q  162 gcagttaactaccgaggattttctcggcagtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttc 261  Q
    ||||||||||| |||||||||  || | ||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||| ||||||||||    
T  8111429 gcagttaactatcgaggatttcttcagtagtaaactgccgaagcgtcctgaagccaagtcagaggcagtagcttcatttcctgaacctgtaatgtgtttc 8111330  T
Q  262 aaacacaa-------catatgtacctgnnnnnnnatgcataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatt 354  Q
    ||||||||       |||||||||||        |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8111329 aaacacaaaacacaacatatgtacctttttttttatgcataacgcttcaaatggcaaaacaaatattggcgcaaatgcacaacttaattaaaccaacatt 8111230  T
Q  355 tttataccattaaacaaagtaaaatatcccatgaaattaaaagtaatgtc 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8111229 tttataccattaaacaaagtaaaatatcccatgaaattaaaagtaatgtc 8111180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 163 - 404
Target Start/End: Complemental strand, 72518 - 72279
Alignment:
Q  163 cagttaactaccgaggattttctcggcagtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttca 262  Q
    |||||||||||||||| ||| ||  ||| ||||||| ||||||||| |||||||||  |||||||||||| ||||||| || ||| || |||||||||||    
T  72518 cagttaactaccgaggttttcctgagcaataaactgtcgaagcgtcctgaagccaaagcagaggcagtagcttcatttactaaacttgtaatgtgtttca 72419  T
Q  263 aacacaacatatgtacctgnnnnnnnatgcataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttatacc 362  Q
    ||||||||| ||||||||        | |||||| ||| |||||  ||| ||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  72418 aacacaacaaatgtacct-tttttttacgcataatggtccaaatcacaaaacaaatattggcgcaaatgcacaacttaattaaaccaacatttt--tacc 72322  T
Q  363 attaaacaaagtaaaat-atcccatgaaattaaaagtaatgtc 404  Q
    ||||||||||||||||| |||| ||||||| |||| |||||||    
T  72321 attaaacaaagtaaaataatccaatgaaatgaaaactaatgtc 72279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 289 - 396
Target Start/End: Original strand, 50020312 - 50020419
Alignment:
Q  289 atgcataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatcccatga 388  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  50020312 atgcataacggttcaaatggcaaaacaaatatgggcgcaaatgcacaacttaattaagccaacatttttataccattaaacaaagtaaaatatcccatga 50020411  T
Q  389 aattaaaa 396  Q
    ||||||||    
T  50020412 aattaaaa 50020419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 160 - 404
Target Start/End: Complemental strand, 46439604 - 46439355
Alignment:
Q  160 ctgcagttaactaccgaggattttctcggcagtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtt 259  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||  |||||||||||| |||||||||| |||||  ||||||||    
T  46439604 ctgcagttaactaccgaggtttttctcggcagtaaacagccgaagcgtcctgaagccaaagcagaggcagtagcttcatttcctaaacctataatgtgtt 46439505  T
Q  260 tcaaac-------acaacatatgtacctg-nnnnnnnatgcataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaac 351  Q
    ||||||       ||||||||||||||||        | |||||| |||||||||  ||  ||||||||||| ||||||||| ||||||||||||||||     
T  46439504 tcaaacacaaaacacaacatatgtacctgttttttttacgcataatggttcaaat--cacaacaaatattggtgcaaatgcaaaacttaattaaaccaat 46439407  T
Q  352 atttttataccattaaacaaagtaaaatatccc-atgaaattaaaagtaatgtc 404  Q
    |||||  |||||||||| ||||||||||||||| ||||||| |||| |||||||    
T  46439406 atttt--taccattaaataaagtaaaatatcccaatgaaatgaaaattaatgtc 46439355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 142 - 269
Target Start/End: Original strand, 50020129 - 50020257
Alignment:
Q  142 cgaagtttta-aaaaccggctgcagttaactaccgaggattttctcggcagtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcattt 240  Q
    |||||||||| |||| ||| |||||||||||| ||||||||| |||||||||||||||| |||||||| |||| ||||||||||||| |||| |||||||    
T  50020129 cgaagttttagaaaatcggttgcagttaactatcgaggatttcctcggcagtaaactgctgaagcgtcctgaaaccaagacagaggcggtagcttcattt 50020228  T
Q  241 cctgaacctgcaatgtgtttcaaacacaa 269  Q
    |||||||||| ||||||||||||||||||    
T  50020229 cctgaacctgtaatgtgtttcaaacacaa 50020257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 292 - 404
Target Start/End: Complemental strand, 50278594 - 50278484
Alignment:
Q  292 cataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatcccatgaaat 391  Q
    |||||||||||||||  ||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  50278594 cataacggttcaaatcacaaaa-aaatattggcgcaaatgcacaacttaattaaaccaacatttttata-cattaaacaaagtaaaaaatcccatgaaat 50278497  T
Q  392 taaaagtaatgtc 404  Q
    |||||||||||||    
T  50278496 taaaagtaatgtc 50278484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 315 - 404
Target Start/End: Original strand, 44674461 - 44674549
Alignment:
Q  315 aaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatcccatgaaattaaaagtaatgtc 404  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  44674461 aaatactggcgcaaatgcacaacttaattaaaccaacatttttata-cattaaacaaagtaaaaaatcccatgaaattaaaagtaatgtc 44674549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 298 - 404
Target Start/End: Original strand, 51492378 - 51492483
Alignment:
Q  298 ggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatcccatgaaattaaaag 397  Q
    |||||||||  ||| | ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||     
T  51492378 ggttcaaataacaaaaaaaatattggcgcaaatgcacaactttattaaaccaacatttttata-cattaaacaaagtaaaaaatcccatgaaattaaaaa 51492476  T
Q  398 taatgtc 404  Q
    |||||||    
T  51492477 taatgtc 51492483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 292 - 404
Target Start/End: Original strand, 37016200 - 37016310
Alignment:
Q  292 cataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatcccatgaaat 391  Q
    |||||||||||||||  ||| | ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||| |||| |||    
T  37016200 cataacggttcaaatcacaaaa-aaatattggcgcaaatgaacaacttaattaaaccaacatttttata-cattaaacaaagtaaaaaatctcatggaat 37016297  T
Q  392 taaaagtaatgtc 404  Q
    |||||||||||||    
T  37016298 taaaagtaatgtc 37016310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 315 - 404
Target Start/End: Complemental strand, 49168964 - 49168875
Alignment:
Q  315 aaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt-aaaatatcccatgaaattaaaagtaatgtc 404  Q
    ||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| |||| | ||||||||||||||| |||||||    
T  49168964 aaatattggtgcaaatgcacaacttaattaaaccaacatttttgta-cattaaacaaagtaaaaaaagcccatgaaattaaaaataatgtc 49168875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 292 - 404
Target Start/End: Original strand, 1305724 - 1305835
Alignment:
Q  292 cataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt-aaaatatcccatgaaa 390  Q
    |||||||||| |||| |||| | ||||||||| |||||||||||||||||||||||||||| |||| || ||||||||||||| |||| | |||||||||    
T  1305724 cataacggtttaaatagcaaaa-aaatattggtgcaaatgcacaacttaattaaaccaacaattttgta-cattaaacaaagtaaaaaaagcccatgaaa 1305821  T
Q  391 ttaaaagtaatgtc 404  Q
    |||||| |||||||    
T  1305822 ttaaaaataatgtc 1305835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 292 - 404
Target Start/End: Original strand, 40355009 - 40355121
Alignment:
Q  292 cataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaa-tatcccatgaaa 390  Q
    |||||||||||||||  ||| | ||  ||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||  | |||||||||    
T  40355009 cataacggttcaaataacaaaaaaataattggtgcaaatgcacaacttaattaaaccaacatttttgta-cattaaacaaagtaaaacaagcccatgaaa 40355107  T
Q  391 ttaaaagtaatgtc 404  Q
    |||||| |||||||    
T  40355108 ttaaaaataatgtc 40355121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 315 - 404
Target Start/End: Original strand, 30723353 - 30723442
Alignment:
Q  315 aaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt-aaaatatcccatgaaattaaaagtaatgtc 404  Q
    ||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||| | |||| | ||||||||||||||| |||||||    
T  30723353 aaatattggtgcaaatgcacaacttaattaaaccaacatttttgta-cattaaacaaaataaaaaaagcccatgaaattaaaaataatgtc 30723442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 315 - 404
Target Start/End: Complemental strand, 31425185 - 31425096
Alignment:
Q  315 aaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt-aaaatatcccatgaaattaaaagtaatgtc 404  Q
    ||||||| | ||||||||||||||||||||||||||||||||| || ||||||||||||| |||| | ||||||||||||||| |||||||    
T  31425185 aaatatttgtgcaaatgcacaacttaattaaaccaacatttttgta-cattaaacaaagtaaaaaaagcccatgaaattaaaaataatgtc 31425096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 292 - 404
Target Start/End: Original strand, 21018193 - 21018304
Alignment:
Q  292 cataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt-aaaatatcccatgaaa 390  Q
    |||||||||||||||  ||| | ||||||||| |||| ||||||||||||||||  |||||||||| || ||||||||||||| |||| | |||||||||    
T  21018193 cataacggttcaaataacaaaa-aaatattggtgcaagtgcacaacttaattaatgcaacatttttcta-cattaaacaaagtaaaaagagcccatgaaa 21018290  T
Q  391 ttaaaagtaatgtc 404  Q
    |||||| |||||||    
T  21018291 ttaaaaataatgtc 21018304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 109 - 202
Target Start/End: Complemental strand, 44680171 - 44680074
Alignment:
Q  109 agtaatttacctaaatgtccctcggcagt---ctatcgaagttttaa-aaaccggctgcagttaactaccgaggattttctcggcagtaaactgccga 202  Q
    |||||||||||||||||||| ||| ||||   ||  ||||||||||  |||||||| ||||||||||||||||||||| ||||||||| |||||||||    
T  44680171 agtaatttacctaaatgtccttcgacagttaactgccgaagttttagtaaaccggcggcagttaactaccgaggatttcctcggcagttaactgccga 44680074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 102 - 197
Target Start/End: Complemental strand, 8111519 - 8111420
Alignment:
Q  102 atacacaagtaatttacctaaatgtccctcggcagtctat---cgaagttt-taaaaaccggctgcagttaactaccgaggattttctcggcagtaaact 197  Q
    |||||| ||||||||| |||||||||| ||||||||  ||   |||||||| |  |||||||||||||||||||||||||||||| ||||||||| ||||    
T  8111519 atacacgagtaatttatctaaatgtccatcggcagttaattgtcgaagtttgtggaaaccggctgcagttaactaccgaggatttcctcggcagttaact 8111420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 9013917 - 9013864
Alignment:
Q  154 aaccggctgcagttaactaccgaggattttctcggcagtaaactgccgaagcgt 207  Q
    ||||||||||||||||||| ||||| ||| ||||||||| ||||||||| ||||    
T  9013917 aaccggctgcagttaactatcgaggttttcctcggcagttaactgccgatgcgt 9013864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 31421731 - 31421779
Alignment:
Q  154 aaccggctgcagttaactaccgaggattttctcggcagtaaactgccga 202  Q
    ||||||| |||| |||||||||||||||| ||||||||| |||||||||    
T  31421731 aaccggcggcagctaactaccgaggatttcctcggcagttaactgccga 31421779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 185
Target Start/End: Complemental strand, 34530864 - 34530786
Alignment:
Q  111 taatttacctaaatgtccctcggcagt---ctatcgaagtttta-aaaaccggctgcagttaactaccgaggattttct 185  Q
    |||||||||||||||||| ||||||||   || ||||||||||| ||| | |||||||||||||| |||||||| ||||    
T  34530864 taatttacctaaatgtccttcggcagttaactgtcgaagttttagaaatctggctgcagttaactgccgaggatcttct 34530786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 50197005 - 50196915
Alignment:
Q  111 taatttacctaaatgtccctcggcagt---ctatcgaagtttta-aaaaccggctgcagttaactaccgaggattttctcggcagtaaact 197  Q
    ||||||||||||||| |||||||||||   ||| |||||||||| ||||  | ||||||||||||||||| ||||| |||| |||| ||||    
T  50197005 taatttacctaaatgcccctcggcagttaactaccgaagttttagaaaattgactgcagttaactaccgatgatttcctcgacagttaact 50196915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 385
Target Start/End: Original strand, 21534865 - 21534929
Alignment:
Q  319 attggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatccca 385  Q
    |||||||||||| ||||  ||||||| |||||||||||  |||||||||| ||||||| ||||||||    
T  21534865 attggcgcaaattcacacattaattacaccaacatttt--taccattaaagaaagtaagatatccca 21534929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 151 - 202
Target Start/End: Complemental strand, 44561381 - 44561330
Alignment:
Q  151 aaaaaccggctgcagttaactaccgaggattttctcggcagtaaactgccga 202  Q
    |||||||||||||||||||||||||||||   |||||| ||| |||||||||    
T  44561381 aaaaaccggctgcagttaactaccgaggaaaatctcggtagttaactgccga 44561330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 955862 - 955825
Alignment:
Q  162 gcagttaactaccgaggattttctcggcagtaaactgc 199  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  955862 gcagttaactaccgaggtttttctcggcagttaactgc 955825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 13173258 - 13173307
Alignment:
Q  153 aaaccggctgcagttaactaccgaggattttctcggcagtaaactgccga 202  Q
    |||||||| ||||  ||||||||||||||| ||||| |||||||||||||    
T  13173258 aaaccggcggcagcaaactaccgaggatttcctcggtagtaaactgccga 13173307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 19073658 - 19073695
Alignment:
Q  162 gcagttaactaccgaggattttctcggcagtaaactgc 199  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  19073658 gcagttaactaccgaggatttcctcggcagttaactgc 19073695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 6181839 - 6181791
Alignment:
Q  154 aaccggctgcagttaactaccgaggattttctcggcagtaaactgccga 202  Q
    ||||||| ||||  ||||||||||||||| ||||||||| |||||||||    
T  6181839 aaccggcggcagcaaactaccgaggatttcctcggcagttaactgccga 6181791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 16983592 - 16983556
Alignment:
Q  162 gcagttaactaccgaggattttctcggcagtaaactg 198  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  16983592 gcagttaactaccgaggtttttctcggcagttaactg 16983556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 164 - 404
Target Start/End: Original strand, 16861216 - 16861466
Alignment:
Q  164 agttaactaccgaggattttctcggcagtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttcaa 263  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||| |||||| |||| ||||||||||| ||||||||||||||||| ||||||||||||    
T  16861216 agttaactatcgaggatttcctcggcagtaaactgccgaagcgtcctgaagc-aagatagaggcagtagcttcatttcctgaacctgtaatgtgtttcaa 16861314  T
Q  264 acacaa-------catatgtacctgnnnnnnn----atgcataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaaca 352  Q
    ||||||       ||||||||||||           |||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  16861315 acacaaaacacaacatatgtacctgtttttttttttatgcataatggttcaaatggcaaaacaaatatttgcgcaaatgcacaacttaattaaaccaaca 16861414  T
Q  353 tttttataccattaaacaaagtaaaatatcccatgaaattaaaagtaatgtc 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16861415 tttttataccattaaacaaagtaaaatatcccatgaaattaaaagtaatgtc 16861466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 106 - 404
Target Start/End: Original strand, 49265761 - 49266080
Alignment:
Q  106 acaagtaatttacctaaatgtccctcggcagtctat---cgaagtttta-aaaaccggctgcagttaactaccgaggattttctcggcagtaaactgccg 201  Q
    ||||||||||||| |||||| |||||  ||||  ||   |||||||||| ||||||||||| |||||||| |||||||||| |||||||||||||||| |    
T  49265761 acaagtaatttacttaaatgcccctcatcagttaattgccgaagttttagaaaaccggctgtagttaacttccgaggatttcctcggcagtaaactgcag 49265860  T
Q  202 aagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttcaaacacaa-------catatgtacctgnnnnnnn------ 288  Q
    ||||||| ||||||||| ||||||| | ||| ||||||||||||||||| ||||||||||||||||||       ||||||||||||                 
T  49265861 aagcgtcttgaagccaaaacagaggtactagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacatatgtacctgtttatttttattt 49265960  T
Q  289 --atgcataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaaca--tttttataccattaaacaaagtaaaatatccc 384  Q
      ||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||    
T  49265961 ttatgcataacagttcaaatgacaaaacaaatattggcgcaaatgcacaacttaattaaaccaacatttttttgtaccattaaacaaagtaaaatatccc 49266060  T
Q  385 atgaaattaaaagtaatgtc 404  Q
    |||||||||||| |||||||    
T  49266061 atgaaattaaaattaatgtc 49266080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 176 - 404
Target Start/End: Complemental strand, 50759390 - 50759153
Alignment:
Q  176 aggattttctcggcagtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttcaaacacaa------ 269  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||| |||||||| ||||||||||||||||||          
T  50759390 aggattttctcggcagtaaactgccgaagcgtcctgaagccaaggcagaggcagtagcttcatttcatgaacctgtaatgtgtttcaaacacaaaacaca 50759291  T
Q  270 -catatgtacctgnnnnnnn-atgcataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaa-catttttataccatta 366  Q
     ||||||||||||        |||||||| |||||||||  ||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  50759290 acatatgtacctgttatttttatgcataatggttcaaatcacaaaacaaatatttgcgcaaatgcacaacttaattaaaccaaacatttttataccatta 50759191  T
Q  367 aacaaagtaaaatatcccatgaaattaaaagtaatgtc 404  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  50759190 aacaaagtaaaatattccatgaaatgaaaagtaatgtc 50759153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 166 - 404
Target Start/End: Complemental strand, 48892109 - 48891862
Alignment:
Q  166 ttaactaccgaggattttctcggcagtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttcaaac 265  Q
    |||| |||||||||||| || | ||||||||||||||||||||  ||||||||| |||||||||||| ||||||||||||||||  ||||||||||||||    
T  48892109 ttaattaccgaggatttccttgtcagtaaactgccgaagcgtcccgaagccaaggcagaggcagtagcttcatttcctgaacctctaatgtgtttcaaac 48892010  T
Q  266 acaa-------catatgtacctgnnnnnnn--atgcataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttt 356  Q
    ||||       |||||||||| |         |||||||| |||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  48892009 acaaaacacaacatatgtaccagtttttttttatgcataatggttcaaatcacaaaacaaatattggcgcaaatgcacaacttaattaaaccaacatttt 48891910  T
Q  357 tataccattaaacaaagtaaaatatcccatgaaattaaaagtaatgtc 404  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  48891909 tataccattaaacaaagtaaaatatcccatgaaatgaaaagtaatgtc 48891862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 164 - 404
Target Start/End: Complemental strand, 41615859 - 41615600
Alignment:
Q  164 agttaactaccgaggattttctcggcagtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttcaa 263  Q
    |||||||||  |||||||| ||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  41615859 agttaactatagaggatttcctcggcagtaaactgccgaagcgtcctgaagccaagacagaggcagcagcttcatttcctgaacctgcaatgtgtttcaa 41615760  T
Q  264 aca-----------------caacatatgtacctgnnnnnnn-atgcataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaa 345  Q
    |||                 |||||||||||||||        | ||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||    
T  41615759 acagtttcaaacacaaaatacaacatatgtacctgttttttttacgcataacggttcaaacggcaaaacaaatattggcgcaaatgcacaaattaattaa 41615660  T
Q  346 accaacatttttataccatt-aaacaaagtaaaatatcccatgaaattaaaagtaatgtc 404  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  41615659 accaacatttttataccattaaaacaaagtaaaatatcccataaaattaaaagtaatgtc 41615600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 166 - 401
Target Start/End: Complemental strand, 44233303 - 44233045
Alignment:
Q  166 ttaactaccgaggattttctcggcagtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttcaaac 265  Q
    ||||||| ||||||||| ||||||||||||||| ||| ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||    
T  44233303 ttaactatcgaggatttcctcggcagtaaactgtcgatgcgtcctgaagccaagacagaggcagtagcttcatttcctgaacctgtaatgtatttcaaac 44233204  T
Q  266 -------acaacatatgtacctg-nnnnnnnatgcataacggttcaaatggcaacacaaatattggcgcaaatgcac---------------aacttaat 342  Q
           ||||||||||||||||        ||||||||||||||||||||||| ||||||||||||||||||||||               ||||||||    
T  44233203 acaaaacacaacatatgtacctgttttttttatgcataacggttcaaatggcaaaacaaatattggcgcaaatgcacaacttaattaaaccaaacttaat 44233104  T
Q  343 taaaccaacatttttataccattaaacaaagtaaaatatcccatgaaattaaaagtaat 401  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  44233103 taaaccaacatttttataccattaaacaaagtaaaatatcacatgaaattaaaagtaat 44233045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 162 - 404
Target Start/End: Complemental strand, 6928715 - 6928467
Alignment:
Q  162 gcagttaactaccgaggattttctcggcagtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttc 261  Q
    ||||| |||| |||||| |||  ||||||||||||  |||||| ||| |||||||||  |||||||||||| |||||||||| |||||| ||||||||||    
T  6928715 gcagtaaacttccgaggttttcttcggcagtaaacaaccgaagtgtcgtgaagccaaagcagaggcagtagcttcatttcctaaacctgtaatgtgtttc 6928616  T
Q  262 aaacacaa-------catatgtacctgnnnnnnnatgcataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatt 354  Q
    ||||||||       ||||||||||||       | |||||| |||| ||||  ||| ||||||||||||||||||||||||||||||||||||||||||    
T  6928615 aaacacaaaacacaacatatgtacctgtttttttacgcataatggtttaaatcacaaaacaaatattggcgcaaatgcacaacttaattaaaccaacatt 6928516  T
Q  355 tttataccattaaacaaagtaaaatatccc-atgaaattaaaagtaatgtc 404  Q
    ||  |||||||||||||||||||||||||| ||||||| |||| |||||||    
T  6928515 tt--taccattaaacaaagtaaaatatcccaatgaaatgaaaactaatgtc 6928467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 162 - 404
Target Start/End: Complemental strand, 48566412 - 48566162
Alignment:
Q  162 gcagttaactaccgaggattttctcggcagtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttc 261  Q
    ||||||||||||||| | ||| ||||| ||| |||| |||||||||| ||||||||||  ||||||||||| |||||||||| ||| || ||||||||||    
T  48566412 gcagttaactaccgaagttttcctcggtagttaactaccgaagcgtcctgaagccaaggtagaggcagtagcttcatttcctaaacttgtaatgtgtttc 48566313  T
Q  262 aaacacaa-------catatgtacctgnnnnnnnat--gcataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaaca 352  Q
    ||||||||       ||| ||||||||        |  |||||| |||||||||  ||| || |||||||||||||||||||||||||||||||||||||    
T  48566312 aaacacaaaacacaacatgtgtacctgtttttttttacgcataatggttcaaatcacaaaacgaatattggcgcaaatgcacaacttaattaaaccaaca 48566213  T
Q  353 tttttataccattaaacaaagtaaaatatccc-atgaaattaaaagtaatgtc 404  Q
    ||||  |||||||||||||||||||||||||| ||||||| |||| |||||||    
T  48566212 tttt--taccattaaacaaagtaaaatatcccaatgaaatgaaaactaatgtc 48566162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 292 - 404
Target Start/End: Complemental strand, 16646945 - 16646834
Alignment:
Q  292 cataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatcccatgaaat 391  Q
    |||||||||||||||  ||| | |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  16646945 cataacggttcaaataacaaaaaaaatattggcacaaatgcacaacttaattaaaccaacatttttata-cattaaacaaagtaaaaaatcccatgaaat 16646847  T
Q  392 taaaagtaatgtc 404  Q
    |||||||||||||    
T  16646846 taaaagtaatgtc 16646834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 258330 - 258233
Alignment:
Q  1 caaattaccattcgactagctggcatccatatagtgagcataaacttagttagcgattgccaacaattaatcaacttcatttttccatcattgatgtt 98  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  258330 caaactaccatttgactagctggcatccatatagtgagcataaacttagatagcgattgccaacaattaatcaactttattttcccatcattgatgtt 258233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 292 - 404
Target Start/End: Complemental strand, 600315 - 600205
Alignment:
Q  292 cataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatcccatgaaat 391  Q
    |||||||||||||||  ||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  600315 cataacggttcaaataacaaaa-aaatattggcgcaaatgcacaacttaattaaaccaacatttttata-cattaaacaaagtaaaaaatcccatgaaat 600218  T
Q  392 taaaagtaatgtc 404  Q
    ||||| |||||||    
T  600217 taaaaataatgtc 600205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 292 - 404
Target Start/End: Original strand, 47070770 - 47070880
Alignment:
Q  292 cataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatcccatgaaat 391  Q
    |||||||||||||||  ||| | |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  47070770 cataacggttcaaataacaaaa-aaatattggcgcaaatgcaccacttaattaaaccaacatttttata-cattaaacaaagtaaaaaatcccatgaaat 47070867  T
Q  392 taaaagtaatgtc 404  Q
    |||||||||||||    
T  47070868 taaaagtaatgtc 47070880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 292 - 404
Target Start/End: Original strand, 50213759 - 50213869
Alignment:
Q  292 cataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatcccatgaaat 391  Q
    |||||||||||||||  ||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||    
T  50213759 cataacggttcaaatcacaaaa-aaatattggcgcaaatgcacaacttaattaaaccaacatttttata-cattaaacaaagtaaaaaatctcatgaaat 50213856  T
Q  392 taaaagtaatgtc 404  Q
    |||||||||||||    
T  50213857 taaaagtaatgtc 50213869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 162 - 269
Target Start/End: Original strand, 17561818 - 17561925
Alignment:
Q  162 gcagttaactaccgaggattttctcggcagtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttc 261  Q
    ||||||||||| ||||||||| ||||||||||||||||||||| ||| |||||||||||||||| |||||| ||||||||||||| ||| ||||||||||    
T  17561818 gcagttaactatcgaggatttcctcggcagtaaactgccgaagtgtcctgaagccaagacagagacagtagcttcatttcctgaatctgtaatgtgtttc 17561917  T
Q  262 aaacacaa 269  Q
    ||||||||    
T  17561918 aaacacaa 17561925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 316 - 404
Target Start/End: Original strand, 17561965 - 17562054
Alignment:
Q  316 aatattggcgcaaatgcacaacttaattaaaccaacatttt--tataccattaaacaaagtaaaatatcccatgaaattaaaagtaatgtc 404  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||    
T  17561965 aatattggcgcaaatgcacaacttaattaaaccaacatttttatataccattaaacaaagtaaaata-cccatgaaattaaaagtaatgtc 17562054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 315 - 404
Target Start/End: Complemental strand, 9473706 - 9473618
Alignment:
Q  315 aaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatcccatgaaattaaaagtaatgtc 404  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||    
T  9473706 aaatattggcgcaaatgcacaacttaattaaatcaacatttttata-cattaaacaaagtaaaaaattccatgaaattaaaagtaatgtc 9473618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 152 - 269
Target Start/End: Original strand, 30252589 - 30252708
Alignment:
Q  152 aaaaccggctgcagttaactaccgaggattttctcggcagtaaactgccgaagcgtcatgaagcc--aagacagaggcagtagtttcatttcctgaacct 249  Q
    ||||||||||| |||||||| |||||||||| |||||||||||| |||||||||||| | |||||  ||| || ||||| ||| |||||||||| |||||    
T  30252589 aaaaccggctgtagttaactgccgaggatttcctcggcagtaaattgccgaagcgtcctaaagccaaaaggcaaaggcaatagcttcatttcctaaacct 30252688  T
Q  250 gcaatgtgtttcaaacacaa 269  Q
    | ||||||||||||||||||    
T  30252689 gtaatgtgtttcaaacacaa 30252708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 292 - 404
Target Start/End: Original strand, 52388101 - 52388211
Alignment:
Q  292 cataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatcccatgaaat 391  Q
    |||||||||||||||  ||| | ||||||| ||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||| ||| ||||||||    
T  52388101 cataacggttcaaataacaaaa-aaatattagcgcaaatgcaaaacttaattaaaccaatatttttata-cattaaacaaagtaaaaaatctcatgaaat 52388198  T
Q  392 taaaagtaatgtc 404  Q
    ||||| |||||||    
T  52388199 taaaaataatgtc 52388211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 292 - 404
Target Start/End: Original strand, 2648154 - 2648265
Alignment:
Q  292 cataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt-aaaatatcccatgaaa 390  Q
    ||||||||||||||| |||| | ||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| |||| | ||||| |||    
T  2648154 cataacggttcaaatagcaaaa-aaatattggtgcaaatgcacaacttaattaaaccaacatttttgta-cattaaacaaagtaaaaaaagcccataaaa 2648251  T
Q  391 ttaaaagtaatgtc 404  Q
    |||||| |||||||    
T  2648252 ttaaaaataatgtc 2648265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 292 - 404
Target Start/End: Complemental strand, 36134054 - 36133942
Alignment:
Q  292 cataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt-aaaatatcccatgaaa 390  Q
    |||||||||||||||  ||| | |||||||||||||||||||||||||||||||||| | |||||| || ||||||||||||| |||| ||| |||||||    
T  36134054 cataacggttcaaataacaaaaaaaatattggcgcaaatgcacaacttaattaaaccgatatttttgta-cattaaacaaagtaaaaaaatctcatgaaa 36133956  T
Q  391 ttaaaagtaatgtc 404  Q
    |||||| |||||||    
T  36133955 ttaaaaataatgtc 36133942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 188 - 269
Target Start/End: Original strand, 42804488 - 42804569
Alignment:
Q  188 gcagtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttcaaacacaa 269  Q
    ||||| ||||||||||||||| |||||||||  |||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  42804488 gcagttaactgccgaagcgtcctgaagccaaagcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaa 42804569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 315 - 404
Target Start/End: Original strand, 46697917 - 46698006
Alignment:
Q  315 aaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt-aaaatatcccatgaaattaaaagtaatgtc 404  Q
    ||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| |||| | ||||||||||||||| |||||||    
T  46697917 aaatattggtgcaaatgcacaacttaattaaaccaacatttttgta-cattaaacaaagtaaaaaaagcccatgaaattaaaaataatgtc 46698006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 292 - 404
Target Start/End: Original strand, 2271657 - 2271764
Alignment:
Q  292 cataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt-aaaatatcccatgaaa 390  Q
    |||||||||||||||  ||| | ||||||||| |||||||||||||||||||||||||||||||||     |||||||||||| |||| |||||||||||    
T  2271657 cataacggttcaaataacaaaa-aaatattggtgcaaatgcacaacttaattaaaccaacattttt-----attaaacaaagtaaaaaaatcccatgaaa 2271750  T
Q  391 ttaaaagtaatgtc 404  Q
    |||||| |||||||    
T  2271751 ttaaaaataatgtc 2271764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 315 - 404
Target Start/End: Original strand, 50477386 - 50477474
Alignment:
Q  315 aaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt-aaaatatcccatgaaattaaaagtaatgtc 404  Q
    ||||||||| ||||| ||||||||||||||||||||||||||| || ||||||||||||| |||| | ||||||||||||||| |||||||    
T  50477386 aaatattggtgcaaa-gcacaacttaattaaaccaacatttttgta-cattaaacaaagtaaaaaaagcccatgaaattaaaaataatgtc 50477474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 104 - 197
Target Start/End: Original strand, 16861100 - 16861197
Alignment:
Q  104 acacaagtaatttacctaaatgtccctcggcagt---ctatcgaagtttta-aaaaccggctgcagttaactaccgaggattttctcggcagtaaact 197  Q
    |||| ||||||||||||||||| |||||| ||||   || ||||||||||| |||||||| |||||||||||||||||||||| ||||| ||| ||||    
T  16861100 acacgagtaatttacctaaatgcccctcgacagttaactgtcgaagttttagaaaaccggatgcagttaactaccgaggatttcctcggtagttaact 16861197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 104 - 202
Target Start/End: Original strand, 41612339 - 41612441
Alignment:
Q  104 acacaagtaatttacctaaatgtccctcggcagt---ctatcgaagtttta-aaaaccggctgcagttaactaccgaggattttctcggcagtaaactgc 199  Q
    |||| |||||||||| ||||||||  | ||||||   || ||||||||||| |||| |||| ||||||||||||||||||||| ||||||||| ||||||    
T  41612339 acacgagtaatttacataaatgtctattggcagttaactgtcgaagttttagaaaatcggcggcagttaactaccgaggatttcctcggcagttaactgc 41612438  T
Q  200 cga 202  Q
    |||    
T  41612439 cga 41612441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 104 - 197
Target Start/End: Original strand, 17561730 - 17561827
Alignment:
Q  104 acacaagtaatttacctaaatgtccctcggcagt---ctatcgaagtttta-aaaaccggctgcagttaactaccgaggattttctcggcagtaaact 197  Q
    |||| |||||||||||||||||||||| | ||||   ||  |||| ||||| |||||||||||||||||||| |||||||||| ||||||||| ||||    
T  17561730 acacgagtaatttacctaaatgtcccttgacagttaactgccgaaattttagaaaaccggctgcagttaactcccgaggatttcctcggcagttaact 17561827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 6928776 - 6928731
Alignment:
Q  153 aaaccggctgcagttaactaccgaggattttctcggcagtaaactg 198  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||    
T  6928776 aaaccggctgcagttaactaccgaggtttttctcggcagtacactg 6928731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 190
Target Start/End: Original strand, 31951229 - 31951315
Alignment:
Q  109 agtaatttacctaaatgtccc-tcggcagt---ctatcgaagtttta-aaaaccggctgcagttaactaccgaggattttctcggca 190  Q
    ||||||||||||||||||||| | ||||||   ||| |||| ||||| ||||||||| |||||||||||||||||||||| ||||||    
T  31951229 agtaatttacctaaatgtccccttggcagttaactaccgaaattttagaaaaccggcggcagttaactaccgaggattttatcggca 31951315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 50481431 - 50481383
Alignment:
Q  154 aaccggctgcagttaactaccgaggattttctcggcagtaaactgccga 202  Q
    ||||||| |||| |||||||||||||||| ||||||||| |||||||||    
T  50481431 aaccggcggcagctaactaccgaggatttcctcggcagttaactgccga 50481383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 338 - 404
Target Start/End: Original strand, 4005061 - 4005127
Alignment:
Q  338 ttaattaaaccaacatttttataccattaaacaaagt-aaaatatcccatgaaattaaaagtaatgtc 404  Q
    ||||||||||||| ||||||||| ||||||||||||| |||| ||  ||||||||||||| |||||||    
T  4005061 ttaattaaaccaatatttttata-cattaaacaaagtaaaaaaatatcatgaaattaaaaataatgtc 4005127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 48892178 - 48892140
Alignment:
Q  149 ttaaaaaccggctgcagttaactaccgaggattttctcg 187  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  48892178 ttaaaaaccggctgcagttaactgccgaagattttctcg 48892140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 6489399 - 6489362
Alignment:
Q  162 gcagttaactaccgaggattttctcggcagtaaactgc 199  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  6489399 gcagttaactaccgaggatttcctcggcagttaactgc 6489362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 180
Target Start/End: Complemental strand, 7839550 - 7839521
Alignment:
Q  151 aaaaaccggctgcagttaactaccgaggat 180  Q
    ||||||||||||||||||||||||||||||    
T  7839550 aaaaaccggctgcagttaactaccgaggat 7839521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 176
Target Start/End: Original strand, 16611076 - 16611147
Alignment:
Q  109 agtaatttacctaaatgtccctcggcagt---ctatcgaagtttta-aaaaccggctgcagttaactaccga 176  Q
    ||||||||||||||||| || ||||||||   ||| |||||||||| ||||||||| |||||||||| ||||    
T  16611076 agtaatttacctaaatgcccttcggcagttaactaccgaagttttagaaaaccggcggcagttaactgccga 16611147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 176
Target Start/End: Complemental strand, 22048177 - 22048106
Alignment:
Q  109 agtaatttacctaaatgtccctcggcagt---ctatcgaagtttta-aaaaccggctgcagttaactaccga 176  Q
    ||||||||||||||||| || ||||||||   ||| |||||||||| ||||||||| |||||||||| ||||    
T  22048177 agtaatttacctaaatgcccttcggcagttaactaccgaagttttagaaaaccggcggcagttaactgccga 22048106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 30947702 - 30947653
Alignment:
Q  153 aaaccggctgcagttaactaccgaggattttctcggcagtaaactgccga 202  Q
    |||||||| |||||||||||||||||| || ||||| ||| |||||||||    
T  30947702 aaaccggcggcagttaactaccgaggaattcctcggtagttaactgccga 30947653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 52391441 - 52391393
Alignment:
Q  153 aaaccggctgcagttaactaccgaggattttctcggcagtaaactgccga 202  Q
    |||||||| ||||| ||||||||||||||| ||||||||| |||||||||    
T  52391441 aaaccggcggcagt-aactaccgaggatttcctcggcagttaactgccga 52391393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 134; Significance: 1e-69; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 104 - 404
Target Start/End: Original strand, 47521388 - 47521697
Alignment:
Q  104 acacaagtaatttacctaaatgtccctcggcagt---ctatcgaagtttta-aaaaccggctgcagttaactaccgaggattttctcggcagtaaactgc 199  Q
    |||| ||||||||||||||||| | |||||||||   ||  |||||||||| ||||||||||      ||||| ||||||||| |||| |||||||||||    
T  47521388 acacgagtaatttacctaaatgcctctcggcagttaactgccgaagttttagaaaaccggct------aactatcgaggatttcctcgacagtaaactgc 47521481  T
Q  200 cgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttcaaacacaa-------catatgtacctgnnnnnnn--at 290  Q
     |||||||| ||||||||| |||||| |||||| ||||||||||||||||| ||||||||||||||||||       ||||||||||||         ||    
T  47521482 tgaagcgtcctgaagccaaaacagagacagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacatatgtacctgtttttttttat 47521581  T
Q  291 gcataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttt--tataccattaaacaaagtaaaatatcccatga 388  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||    
T  47521582 gcataacggttcaaatggcaaaacaaatattgacgcaaatgcacaacttaattaaaccaacatttttatataccgttaaacaaagtaaaatatcccatga 47521681  T
Q  389 aattaaaagtaatgtc 404  Q
    ||||||||||||||||    
T  47521682 aattaaaagtaatgtc 47521697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 162 - 404
Target Start/End: Complemental strand, 16681060 - 16680810
Alignment:
Q  162 gcagttaactaccgaggattttctcggcagtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttc 261  Q
    |||||||||||| || | ||| |||||||||||| ||  |||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||||||    
T  16681060 gcagttaactactgaagttttcctcggcagtaaattgttgaagcgtcctgaagccaggacagaggcagtagcttcatttcctgaacctgtaatgtgtttc 16680961  T
Q  262 aaacacaaca-------tatgtacctgnnnnnnn-atgcataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacat 353  Q
    |||||||| |       ||||||||||        |||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  16680960 aaacacaaaacacaatatatgtacctgttttttttatgcataatggttcaaatggcaaaataaatattggcgcaaatgcacaacttaattaaaccaacat 16680861  T
Q  354 ttttataccattaaacaaagtaaaatatcccatgaaattaaaagtaatgtc 404  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  16680860 ttttataccattaaacaaagtaaaatatcacatgaaattaaaagtaatgtc 16680810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 162 - 404
Target Start/End: Complemental strand, 17655296 - 17655046
Alignment:
Q  162 gcagttaactaccgaggattttctcggcagtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttc 261  Q
    |||||||||||| || | ||| |||||||||||| ||  |||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||||||    
T  17655296 gcagttaactactgaagttttcctcggcagtaaattgttgaagcgtcctgaagccaggacagaggcagtagcttcatttcctgaacctgtaatgtgtttc 17655197  T
Q  262 aaacacaaca-------tatgtacctgnnnnnnn-atgcataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacat 353  Q
    |||||||| |       ||||||||||        |||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  17655196 aaacacaaaacacaatatatgtacctgttttttttatgcataatggttcaaatggcaaaataaatattggcgcaaatgcacaacttaattaaaccaacat 17655097  T
Q  354 ttttataccattaaacaaagtaaaatatcccatgaaattaaaagtaatgtc 404  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17655096 ttttataccattaaacaaagtaaaatatcacatgaaattaaaagtaatgtc 17655046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 166 - 404
Target Start/End: Original strand, 27450176 - 27450411
Alignment:
Q  166 ttaactaccgaggattttctcggcagtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttcaaac 265  Q
    ||||||| ||||||||| || |||||||||||| ||||||||| |||||||||||||||||||| |  ||||||||||||||||  ||||||||||||||    
T  27450176 ttaactatcgaggatttcctaggcagtaaactgtcgaagcgtcctgaagccaagacagaggcaggaacttcatttcctgaacctataatgtgtttcaaac 27450275  T
Q  266 acaa-------catatgtacctgnnnnnnnatgcataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttt-- 356  Q
    ||||       |||||||||            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||      
T  27450276 acaaaacacaacatatgtac------------gcataacggttcaaatggcaaaacaaatattggcgcaaatgcacaacttaattaaaccaacattttta 27450363  T
Q  357 tataccattaaacaaagtaaaatatcccatgaaattaaaagtaatgtc 404  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    
T  27450364 tataccattaaacaaagtaaaatatcccatgaaattaaaattaatgtc 27450411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 291 - 404
Target Start/End: Complemental strand, 19801964 - 19801851
Alignment:
Q  291 gcataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatcccatgaaa 390  Q
    |||||||||||||||  | || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  19801964 gcataacggttcaaacagtaaaacaaatattggctcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatctcatgaaa 19801865  T
Q  391 ttaaaagtaatgtc 404  Q
    ||||||||||||||    
T  19801864 ttaaaagtaatgtc 19801851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 163 - 269
Target Start/End: Original strand, 9491468 - 9491574
Alignment:
Q  163 cagttaactaccgaggattttctcggcagtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttca 262  Q
    |||||||||||||||||||| |||||||||||||||| |||||||| |||||||||  |||||||||||| |||||||||| |||||| |||||||||||    
T  9491468 cagttaactaccgaggatttcctcggcagtaaactgctgaagcgtcctgaagccaatgcagaggcagtagcttcatttcctaaacctgtaatgtgtttca 9491567  T
Q  263 aacacaa 269  Q
    |||||||    
T  9491568 aacacaa 9491574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 316 - 404
Target Start/End: Complemental strand, 36980979 - 36980891
Alignment:
Q  316 aatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatcccatgaaattaaaagtaatgtc 404  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||    
T  36980979 aatattgacgcaaatgcacaacttaattaaaccaacatttttatacctttaaacaaggtaaaatatcccatgaaatgaaaagtaatgtc 36980891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 166 - 269
Target Start/End: Original strand, 47669671 - 47669774
Alignment:
Q  166 ttaactaccgaggattttctcggcagtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttcaaac 265  Q
    ||||||||| | ||||| ||| ||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||    
T  47669671 ttaactaccaaagatttcctctgcagtaaactgccgaagcgtcctgaagccaaggcagaggcagtagattcatttcctgaacctgtaatgtgtttcaaac 47669770  T
Q  266 acaa 269  Q
    ||||    
T  47669771 acaa 47669774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 292 - 404
Target Start/End: Original strand, 5538146 - 5538257
Alignment:
Q  292 cataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt-aaaatatcccatgaaa 390  Q
    |||||||||||||||  ||| | ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||    
T  5538146 cataacggttcaaatcacaaaa-aaatattggtgcaaatgcacaacttaattaaaccaacatttttata-cattaaacaaagtaaaaaaatcccatgaaa 5538243  T
Q  391 ttaaaagtaatgtc 404  Q
    ||||||||||||||    
T  5538244 ttaaaagtaatgtc 5538257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 315 - 404
Target Start/End: Complemental strand, 34742145 - 34742057
Alignment:
Q  315 aaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatcccatgaaattaaaagtaatgtc 404  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||    
T  34742145 aaatattggcacaaatgcacaacttaattaaaccaacatttttata-cattaaacaaagtaaaaaatcccattaaattaaaagtaatgtc 34742057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 292 - 404
Target Start/End: Complemental strand, 10522286 - 10522175
Alignment:
Q  292 cataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt-aaaatatcccatgaaa 390  Q
    |||||||||||||||  ||| | ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||| |||||||||||    
T  10522286 cataacggttcaaataacaaaa-aaatattggcgcaaatgcacaacttaattaaaccaacatttttgta-cattaaacaaagtaaaaaaatcccatgaaa 10522189  T
Q  391 ttaaaagtaatgtc 404  Q
    |||||| |||||||    
T  10522188 ttaaaaataatgtc 10522175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 292 - 404
Target Start/End: Complemental strand, 13323486 - 13323378
Alignment:
Q  292 cataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatcccatgaaat 391  Q
    |||||||||||||||  |||   ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||| |||    
T  13323486 cataacggttcaaatcacaa---aaaaattggcgcaaatgcacaacttaattaaaccaacatttttata-cattaaacaaagtaaaaaatctcatggaat 13323391  T
Q  392 taaaagtaatgtc 404  Q
    || ||||||||||    
T  13323390 tagaagtaatgtc 13323378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 292 - 401
Target Start/End: Complemental strand, 17838406 - 17838298
Alignment:
Q  292 cataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt-aaaatatcccatgaaa 390  Q
    |||||||||||||||  ||| | ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||| || ||||||||    
T  17838406 cataacggttcaaataacaaaa-aaatattggcgcaaatgcacaacttaattaaaccaacatttttgta-cattaaacaaagtaaaaaaattccatgaaa 17838309  T
Q  391 ttaaaagtaat 401  Q
    |||||| ||||    
T  17838308 ttaaaaataat 17838298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 162 - 256
Target Start/End: Complemental strand, 19804503 - 19804409
Alignment:
Q  162 gcagttaactaccgaggattttctcggcagtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgt 256  Q
    ||||||||||| |||||| ||  ||| |||| ||||||||||||||| |||||||||||||||||||| || |||||||| ||||||||||||||    
T  19804503 gcagttaactatcgaggaattcttcgacagttaactgccgaagcgtcctgaagccaagacagaggcagcagcttcatttcttgaacctgcaatgt 19804409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 315 - 404
Target Start/End: Original strand, 35606995 - 35607084
Alignment:
Q  315 aaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt-aaaatatcccatgaaattaaaagtaatgtc 404  Q
    ||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| |||| | ||||||||||||||| |||||||    
T  35606995 aaatattggtgcaaatgcacaacttaattaaaccaacatttttgta-cattaaacaaagtaaaaaaagcccatgaaattaaaaataatgtc 35607084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 315 - 404
Target Start/End: Complemental strand, 41883993 - 41883904
Alignment:
Q  315 aaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt-aaaatatcccatgaaattaaaagtaatgtc 404  Q
    ||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| |||| | ||||||||||||||| |||||||    
T  41883993 aaatattggtgcaaatgcacaacttaattaaaccaacatttttgta-cattaaacaaagtaaaaaaagcccatgaaattaaaaataatgtc 41883904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 166 - 243
Target Start/End: Complemental strand, 11100490 - 11100413
Alignment:
Q  166 ttaactaccgaggattttctcggcagtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcct 243  Q
    |||||||| |||||||| ||||||||||||||||||||  ||| |||||||||| |||||||||||| ||||||||||    
T  11100490 ttaactactgaggatttcctcggcagtaaactgccgaattgtcctgaagccaaggcagaggcagtagcttcatttcct 11100413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 313 - 374
Target Start/End: Complemental strand, 11100409 - 11100351
Alignment:
Q  313 acaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt 374  Q
    |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||    
T  11100409 acaaatattggcgcaaatgcacaacttaattaaaccaacattt---taccattaaacaaagt 11100351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 104 - 202
Target Start/End: Complemental strand, 5541645 - 5541543
Alignment:
Q  104 acacaagtaatttacctaaatgtccctcggcagt---ctatcgaagtttta-aaaaccggctgcagttaactaccgaggattttctcggcagtaaactgc 199  Q
    |||| ||||||||||||||||| || | ||||||   || || |||||||| ||||||||| |||||||||| |||||||||| ||||||||| ||||||    
T  5541645 acacgagtaatttacctaaatgccctttggcagttaactgtcaaagttttagaaaaccggcggcagttaactcccgaggatttcctcggcagttaactgc 5541546  T
Q  200 cga 202  Q
    |||    
T  5541545 cga 5541543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 16674793 - 16674840
Alignment:
Q  153 aaaccggctgcagttaactaccgaggattttctcggcagtaaactgcc 200  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||    
T  16674793 aaaccggctgcagttaactaccgaggatttcctcggcagttaactgcc 16674840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 17649161 - 17649208
Alignment:
Q  153 aaaccggctgcagttaactaccgaggattttctcggcagtaaactgcc 200  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||    
T  17649161 aaaccggctgcagttaactaccgaggatttcctcggcagttaactgcc 17649208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 202
Target Start/End: Original strand, 45256963 - 45257060
Alignment:
Q  109 agtaatttacctaaatgtccctcggcagt---ctatcgaagtttta-aaaaccggctgcagttaactaccgaggattttctcggcagtaaactgccga 202  Q
    |||||||||||||||||||| ||||||||    | |||||||||||  |||||||| |||| ||||| | |||||||| ||||||||| |||||||||    
T  45256963 agtaatttacctaaatgtccttcggcagttaattgtcgaagttttagtaaaccggcggcagctaactcctgaggatttcctcggcagttaactgccga 45257060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 9491432 - 9491481
Alignment:
Q  153 aaaccggctgcagttaactaccgaggattttctcggcagtaaactgccga 202  Q
    |||||||||||||||||||||||||||||| |||| |||| |||| ||||    
T  9491432 aaaccggctgcagttaactaccgaggatttcctcgacagttaactaccga 9491481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 17465762 - 17465713
Alignment:
Q  153 aaaccggctgcagttaactaccgaggattttctcggcagtaaactgccga 202  Q
    |||||||| |||| |||||||||||||||| ||||||||| |||||||||    
T  17465762 aaaccggcggcagctaactaccgaggatttcctcggcagttaactgccga 17465713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 17587452 - 17587501
Alignment:
Q  153 aaaccggctgcagttaactaccgaggattttctcggcagtaaactgccga 202  Q
    |||||||| |||| |||||||||||||||| ||||||||| |||||||||    
T  17587452 aaaccggcggcagctaactaccgaggatttcctcggcagttaactgccga 17587501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 48590390 - 48590338
Alignment:
Q  151 aaaaaccggctgcagttaactaccgaggattttctcggcagtaaactgccgaa 203  Q
    ||||| |||||||||||||||||||||||   |||||||||| ||||||||||    
T  48590390 aaaaatcggctgcagttaactaccgaggaaaatctcggcagttaactgccgaa 48590338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 104 - 197
Target Start/End: Complemental strand, 19804591 - 19804494
Alignment:
Q  104 acacaagtaatttacctaaatgtccctcggcagt---ctatcgaagttt-taaaaaccggctgcagttaactaccgaggattttctcggcagtaaact 197  Q
    |||| ||||||||||||||||| ||||||| |||   ||  |||||||| |  ||||||||||||||||||| |||||||||| || |||||| ||||    
T  19804591 acacgagtaatttacctaaatgcccctcggtagttaactgccgaagtttgtggaaaccggctgcagttaactgccgaggatttccttggcagttaact 19804494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 37340372 - 37340335
Alignment:
Q  162 gcagttaactaccgaggattttctcggcagtaaactgc 199  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  37340372 gcagttaactaccgaggtttttctcggcagttaactgc 37340335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 43032998 - 43033047
Alignment:
Q  153 aaaccggctgcagttaactaccgaggattttctcggcagtaaactgccga 202  Q
    |||||||| |||||||||||||||||| || ||||| ||| |||||||||    
T  43032998 aaaccggcggcagttaactaccgaggaattcctcggtagttaactgccga 43033047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 10168306 - 10168258
Alignment:
Q  154 aaccggctgcagttaactaccgaggattttctcggcagtaaactgccga 202  Q
    ||||||| ||||  ||||||||||||||| ||||||||| |||||||||    
T  10168306 aaccggcggcagcaaactaccgaggatttcctcggcagttaactgccga 10168258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 10175831 - 10175783
Alignment:
Q  154 aaccggctgcagttaactaccgaggattttctcggcagtaaactgccga 202  Q
    ||||||| ||||  ||||||||||||||| ||||||||| |||||||||    
T  10175831 aaccggcggcagcaaactaccgaggatttcctcggcagttaactgccga 10175783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 8e-68; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 162 - 404
Target Start/End: Complemental strand, 20859618 - 20859364
Alignment:
Q  162 gcagttaactaccgaggattttctcggcagtaaactgccgaagcgtcatgaagccaagaca--gaggcagtagtttcatttcctgaacctgcaatgtgtt 259  Q
    ||||||||||| | |||| || ||||||||| ||||||||||||||| |||||||||||||  |||||||||| ||||||||||||||||||||||||||    
T  20859618 gcagttaactatcaaggaattcctcggcagttaactgccgaagcgtcctgaagccaagacaaagaggcagtagcttcatttcctgaacctgcaatgtgtt 20859519  T
Q  260 tcaaacacaa-------catatgtacctgnnnnnnnat---gcataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaacca 349  Q
    ||||||||||       ||||||||  ||        |   ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||    
T  20859518 tcaaacacaaaacacaacatatgtatttgttttttttttacgcataacggttcaaacggcaaaacaaatattggggcaaatgcacaacttaattaaacca 20859419  T
Q  350 acatttttataccattaaacaaagtaaaatatcccatgaaattaaaagtaatgtc 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20859418 acatttttataccattaaacaaagtaaaatatcccatgaaattaaaagtaatgtc 20859364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 195 - 404
Target Start/End: Original strand, 39831240 - 39831460
Alignment:
Q  195 actgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttcaaacacaa-------catatgtacctgnnnnnn 287  Q
    |||||||||||||| ||||||||||||||||||| ||  ||||||||| ||||||| ||||||||||||||||||       ||||||||||||          
T  39831240 actgccgaagcgtcctgaagccaagacagaggcattaacttcatttccggaacctgtaatgtgtttcaaacacaaaacacaacatatgtacctgtttttt 39831339  T
Q  288 n--atgcataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttt--tataccattaaacaaagtaaaatatcc 383  Q
       ||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||     
T  39831340 tttatgcataacggttaaaatgacaaaacaaatattggcgcaaatgcacaacttaattaaaccaacatttttatataccattaaacaaagtaaaatatct 39831439  T
Q  384 catgaaattaaaagtaatgtc 404  Q
    |||||||||||||||||||||    
T  39831440 catgaaattaaaagtaatgtc 39831460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 161 - 385
Target Start/End: Original strand, 40075164 - 40075396
Alignment:
Q  161 tgcagttaactaccgaggattttc-tcggcagtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtt 259  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||||||  |||||||||  |||||||||||| |||||||||| |||||| ||||||||    
T  40075164 tgcagttaactaccgaggtttttcctcggcagtaaacttccgaagcgttctgaagccaaagcagaggcagtagcttcatttcctaaacctgtaatgtgtt 40075263  T
Q  260 tc-------aaacacaacatatgtacctg--nnnnnnnatgcataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaa 350  Q
    ||       |||||||||||| |||||||         | |||||| |||||||||   || |||||||||||||||||||||||||||| |||||||||    
T  40075264 tcaaacacaaaacacaacatacgtacctgtttttttttacgcataatggttcaaatcaaaaaacaaatattggcgcaaatgcacaacttatttaaaccaa 40075363  T
Q  351 catttttataccattaaacaaagtaaaatatccca 385  Q
    ||||||  |||||||||||||||||||||||||||    
T  40075364 catttt--taccattaaacaaagtaaaatatccca 40075396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 174 - 404
Target Start/End: Complemental strand, 35555174 - 35554930
Alignment:
Q  174 cgaggattttctcggcagtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttcaaacacaa---- 269  Q
    ||||| ||| ||||||||||||||| ||||||||| |||||||||  |||||| ||||| |||||||||| |||||| ||||||||||||||||||        
T  35555174 cgaggttttcctcggcagtaaactgtcgaagcgtcctgaagccaaagcagaggtagtagcttcatttcctaaacctgtaatgtgtttcaaacacaaaaca 35555075  T
Q  270 ---catatgtacctgnnnnnnn--------atgcataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacattttta 358  Q
       ||||||||||||               |||||||| |||||||||  ||| ||||||||||| |||||| |||||||||||||||||||||||||      
T  35555074 caacatatgtacctgtttttttttttttttatgcataatggttcaaatcacaaaacaaatattggggcaaatacacaacttaattaaaccaacatttt-- 35554977  T
Q  359 taccattaaacaaagtaaaatatccc-atgaaattaaaagtaatgtc 404  Q
    |||||||||||||||||||||||||| ||||||| |||| |||||||    
T  35554976 taccattaaacaaagtaaaatatcccaatgaaatgaaaactaatgtc 35554930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 184 - 404
Target Start/End: Complemental strand, 52652 - 52424
Alignment:
Q  184 ctcggcagtaaactgcc-gaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttcaaacacaa-------catatg 275  Q
    ||||| ||| ||||||| |||||||| ||||||||||||||||||||||| || ||||||| |||||| ||||||||||||||||||       ||||||    
T  52652 ctcggtagttaactgcctgaagcgtcctgaagccaagacagaggcagtagctttatttcctaaacctgtaatgtgtttcaaacacaaaacacaacatatg 52553  T
Q  276 tacc--tgnnnnnnnatgcataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaag 373  Q
    ||||  |        | |||||| |||||||||  ||| |||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||    
T  52552 taccaatttttttttacgcataatggttcaaatcacaaaacaaatattggcacaaatgcacaacttaattaaaccaacatttt--taccattaaacaaag 52455  T
Q  374 taaaatatccc-atgaaattaaaagtaatgtc 404  Q
    ||||| ||||| ||||||| |||| |||||||    
T  52454 taaaa-atcccaatgaaatgaaaactaatgtc 52424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 318 - 404
Target Start/End: Original strand, 41239175 - 41239260
Alignment:
Q  318 tattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatcccatgaaattaaaagtaatgtc 404  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  41239175 tattggcgtaaatgcacaacttaattaaaccaacatttttata-cattaaacaaagtaaaaaatcccatgaaattaaaagtaatgtc 41239260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 315 - 404
Target Start/End: Original strand, 34367234 - 34367322
Alignment:
Q  315 aaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatcccatgaaattaaaagtaatgtc 404  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||| |||||||    
T  34367234 aaatattggcgcaattgcacaacttaattaaaccaacatttttata-cattaaacaaagtaaaaaatctcatgaaattaaaaataatgtc 34367322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 291 - 403
Target Start/End: Original strand, 34819213 - 34819324
Alignment:
Q  291 gcataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatccc-atgaa 389  Q
    |||||| |||||||||  ||| ||||||||| |||||||| |||||||||||||||||||||||||  ||||||| |||||||||||||||||| |||||    
T  34819213 gcataatggttcaaatcacaaaacaaatattagcgcaaatacacaacttaattaaaccaacatttt--taccattcaacaaagtaaaatatcccaatgaa 34819310  T
Q  390 attaaaagtaatgt 403  Q
    || |||| ||||||    
T  34819311 atgaaaactaatgt 34819324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 315 - 404
Target Start/End: Original strand, 22088 - 22177
Alignment:
Q  315 aaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt-aaaatatcccatgaaattaaaagtaatgtc 404  Q
    ||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| |||| | ||||||||||||||| |||||||    
T  22088 aaatattggtgcaaatgcacaacttaattaaaccaacatttttgta-cattaaacaaagtaaaaaaagcccatgaaattaaaaataatgtc 22177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 315 - 404
Target Start/End: Complemental strand, 1055979 - 1055890
Alignment:
Q  315 aaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt-aaaatatcccatgaaattaaaagtaatgtc 404  Q
    ||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| |||| | ||||||||||||||| |||||||    
T  1055979 aaatattggtgcaaatgcacaacttaattaaaccaacatttttgta-cattaaacaaagtaaaaaaagcccatgaaattaaaaataatgtc 1055890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 315 - 404
Target Start/End: Original strand, 23018891 - 23018980
Alignment:
Q  315 aaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt-aaaatatcccatgaaattaaaagtaatgtc 404  Q
    ||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| |||| | ||||||||||||||| |||||||    
T  23018891 aaatattggtgcaaatgcacaacttaattaaaccaacatttttgta-cattaaacaaagtaaaaaaagcccatgaaattaaaaataatgtc 23018980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 315 - 404
Target Start/End: Complemental strand, 26662900 - 26662811
Alignment:
Q  315 aaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt-aaaatatcccatgaaattaaaagtaatgtc 404  Q
    ||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| |||| | ||||||||||||||| |||||||    
T  26662900 aaatattggtgcaaatgcacaacttaattaaaccaacatttttgta-cattaaacaaagtaaaaaaagcccatgaaattaaaaataatgtc 26662811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 390
Target Start/End: Original strand, 15033365 - 15033440
Alignment:
Q  315 aaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt-aaaatatcccatgaaa 390  Q
    ||||||||| ||||||||||||||||||| ||||||||||||| || ||||||||||||| |||| |||||||||||    
T  15033365 aaatattggtgcaaatgcacaacttaatttaaccaacatttttgta-cattaaacaaagtaaaaagatcccatgaaa 15033440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 202
Target Start/End: Original strand, 20854588 - 20854690
Alignment:
Q  104 acacaagtaatttacctaaatgtccctcggcagt---ctatcgaagtttta-aaaaccggctgcagttaactaccgaggattttctcggcagtaaactgc 199  Q
    |||| ||||||||| ||| |||||||||||||||   ||  |||||||||| ||||||||| |||||||||||  |||||||| ||| ||||| ||||||    
T  20854588 acacgagtaatttatctacatgtccctcggcagttaactgccgaagttttagaaaaccggcggcagttaactattgaggatttcctccgcagttaactgc 20854687  T
Q  200 cga 202  Q
    |||    
T  20854688 cga 20854690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 269
Target Start/End: Original strand, 34819110 - 34819166
Alignment:
Q  213 agccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttcaaacacaa 269  Q
    |||||| ||||||||||||| |||||||||| |||||| ||| ||||||||||||||    
T  34819110 agccaaaacagaggcagtagcttcatttcctaaacctgtaatatgtttcaaacacaa 34819166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 35555481 - 35555436
Alignment:
Q  153 aaaccggctgcagttaactaccgaggattttctcggcagtaaactg 198  Q
    |||||||||||||||||||||||| | ||||||||||| |||||||    
T  35555481 aaaccggctgcagttaactaccgaagtttttctcggcactaaactg 35555436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 26659479 - 26659527
Alignment:
Q  154 aaccggctgcagttaactaccgaggattttctcggcagtaaactgccga 202  Q
    ||||||| |||| |||||||||||||||| ||||||||| |||||||||    
T  26659479 aaccggcggcagctaactaccgaggatttcctcggcagttaactgccga 26659527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 201
Target Start/End: Original strand, 17924286 - 17924325
Alignment:
Q  162 gcagttaactaccgaggattttctcggcagtaaactgccg 201  Q
    ||||||||||||||||| ||||||||||||| ||||||||    
T  17924286 gcagttaactaccgaggtttttctcggcagttaactgccg 17924325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 197
Target Start/End: Complemental strand, 20859698 - 20859609
Alignment:
Q  112 aatttacctaaatgtccctcggcagt---ctatcgaagttt-taaaaaccggctgcagttaactaccgaggattttctcggcagtaaact 197  Q
    ||||||||||||||||||||| ||||   ||  |||||||| |  |||||||||||| |||||| |||||||||| ||||||||| ||||    
T  20859698 aatttacctaaatgtccctcgacagttaactgccgaagtttgtggaaaccggctgcatttaactcccgaggatttcctcggcagttaact 20859609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 5680463 - 5680405
Alignment:
Q  156 ccggctgcagttaactaccgaggattttctcggcagtaaactgccgaagcgtcatgaag 214  Q
    |||| ||||||||| |||||||| ||| ||||||| ||||||||||| ||||| |||||    
T  5680463 ccggttgcagttaagtaccgaggttttcctcggcactaaactgccgatgcgtcttgaag 5680405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 185
Target Start/End: Original strand, 22547445 - 22547525
Alignment:
Q  109 agtaatttacctaaatgtccctcggcagt---ctatcgaagttttaaaaa-ccggctgcagttaactaccgaggattttct 185  Q
    |||||||| |||||||| || ||||||||   ||  |||||||||| ||| ||||||||||||||||||||||||| ||||    
T  22547445 agtaatttgcctaaatgcccttcggcagttaactgccgaagttttagaaatccggctgcagttaactaccgaggatcttct 22547525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 352
Target Start/End: Original strand, 21999 - 22036
Alignment:
Q  315 aaatattggcgcaaatgcacaacttaattaaaccaaca 352  Q
    ||||||||| |||||||||||||||||||||| |||||    
T  21999 aaatattggtgcaaatgcacaacttaattaaatcaaca 22036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 352
Target Start/End: Complemental strand, 1056068 - 1056031
Alignment:
Q  315 aaatattggcgcaaatgcacaacttaattaaaccaaca 352  Q
    ||||||||| |||||||||||||||||||||| |||||    
T  1056068 aaatattggtgcaaatgcacaacttaattaaatcaaca 1056031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 1114813 - 1114776
Alignment:
Q  162 gcagttaactaccgaggattttctcggcagtaaactgc 199  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  1114813 gcagttaactaccgaggatttcctcggcagttaactgc 1114776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 7340091 - 7340140
Alignment:
Q  153 aaaccggctgcagttaactaccgaggattttctcggcagtaaactgccga 202  Q
    |||||||| |||||||||||||||||| || ||||| ||| |||||||||    
T  7340091 aaaccggcggcagttaactaccgaggaattcctcggtagttaactgccga 7340140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 179
Target Start/End: Complemental strand, 22550967 - 22550888
Alignment:
Q  104 acacaagtaatttacctaaatgtccctcggcagt---ctatcgaagtttta-aaaaccggctgcagttaactaccgagga 179  Q
    |||| ||||||||||||||||| || ||||||||   ||  |||||||||| ||| |||||||||||||||| |||||||    
T  22550967 acacgagtaatttacctaaatgcccttcggcagttaactgccgaagttttagaaatccggctgcagttaactgccgagga 22550888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 44727565 - 44727528
Alignment:
Q  142 cgaagttttaaaaaccggctgcagttaactaccgagga 179  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  44727565 cgaagtttgaaaaaacggctgcagttaactaccgagga 44727528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 2712427 - 2712475
Alignment:
Q  154 aaccggctgcagttaactaccgaggattttctcggcagtaaactgccga 202  Q
    ||||||||||||||||||||||||||   | |||||||| |||||||||    
T  2712427 aaccggctgcagttaactaccgaggaaaatttcggcagttaactgccga 2712475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 7e-62; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 171 - 404
Target Start/End: Original strand, 35255891 - 35256135
Alignment:
Q  171 taccgaggattttctcggcagtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttcaaacacaa- 269  Q
    |||||||||||| |||||||||||||||||||||| || |||||||||| |||||||| ||| |||||||  |||||||| ||| ||||||||||||||     
T  35255891 taccgaggatttcctcggcagtaaactgccgaagcatcctgaagccaaggcagaggcaatagcttcatttgttgaacctgtaatttgtttcaaacacaaa 35255990  T
Q  270 ------catatgtacctgnnnnnnn----atgcataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttat 359  Q
          ||||||||||||           |||||||| |||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35255991 acacaacatatgtacctgtttttttttttatgcataatggttcaaatcacaaaacaaatattggcgcaaatgcacaacttaattaaaccaacatttttat 35256090  T
Q  360 accattaaacaaagtaaaatatcccatgaaattaaaagtaatgtc 404  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  35256091 accattaaacaaagtaaaatatcccatgaaatgaaaagtaatgtc 35256135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 166 - 403
Target Start/End: Complemental strand, 51337497 - 51337249
Alignment:
Q  166 ttaactaccgaggattttctcggcagtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttcaaac 265  Q
    |||| |||||||||||| ||||||||||||||||||||| ||| |||||||||| |||||||||||| |||||||||| |||||| ||||||||||||||    
T  51337497 ttaattaccgaggatttcctcggcagtaaactgccgaagtgtcctgaagccaaggcagaggcagtagcttcatttcctaaacctgtaatgtgtttcaaac 51337398  T
Q  266 acaaca-------tatgtacctgnnnnnnnat----gcataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatt 354  Q
    |||| |       ||||||| |        ||    |||||| |||||||||  ||| | ||||||||||||||||||||||||||||||||||||||||    
T  51337397 acaaaacacaatatatgtacttatttatttatttatgcataatggttcaaatcacaaaataaatattggcgcaaatgcacaacttaattaaaccaacatt 51337298  T
Q  355 tttataccattaaacaaagtaaaatatcccatgaaattaaaagtaatgt 403  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  51337297 tttataccattaaacaaagtaaaatatcccatgaaatgaaaagtaatgt 51337249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 157 - 404
Target Start/End: Complemental strand, 45829175 - 45828917
Alignment:
Q  157 cggctgcagttaactaccgaggattttctcggcagtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgt 256  Q
    |||||||||||||||||| ||| ||| |||||||||||||||  |||||||| |||||||||  |||||||||||| ||||||||||||||||| |||||    
T  45829175 cggctgcagttaactaccaaggttttcctcggcagtaaactgttgaagcgtcctgaagccaaatcagaggcagtagcttcatttcctgaacctgtaatgt 45829076  T
Q  257 gtttcaaaca-------caacatatgtacctgnnnnnnnat-----gcataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaatta 344  Q
    ||||||||||       ||||||||||| |||        |     |||||| |||||||||  ||| ||||||||||||||||||||||||||||||||    
T  45829075 gtttcaaacaaaaaacacaacatatgtatctgtttttattttttacgcataatggttcaaatcacaaaacaaatattggcgcaaatgcacaacttaatta 45828976  T
Q  345 aaccaacatttttataccattaaacaaagtaaaatatccca-tgaaattaaaagtaatgtc 404  Q
    ||||||||||||  ||||||||||||||||||||||||||| |||||| |||| |||||||    
T  45828975 aaccaacatttt--taccattaaacaaagtaaaatatcccactgaaatgaaaactaatgtc 45828917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 109 - 271
Target Start/End: Complemental strand, 47505982 - 47505816
Alignment:
Q  109 agtaatttacctaaatgtccctcggcagtctat---cgaagtttta-aaaaccggctgcagttaactaccgaggattttctcggcagtaaactgccgaag 204  Q
    ||||||||| ||||||| | |||||||||  ||   |||||||||| |||| |||||||||||||||| ||||||||| |||||||||||||||||||||    
T  47505982 agtaatttatctaaatgcctctcggcagttaattgccgaagttttagaaaatcggctgcagttaactatcgaggatttcctcggcagtaaactgccgaag 47505883  T
Q  205 cgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttcaaacacaaca 271  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||    
T  47505882 cgtcctgaagccaagacagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacaaaaca 47505816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 162 - 404
Target Start/End: Complemental strand, 47661456 - 47661206
Alignment:
Q  162 gcagttaactaccgaggattttctcggcagtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttc 261  Q
    ||||| ||||||||| | ||| |||||||||||| || ||||||||| |||||||||  |||||||||||| ||||||| || |||||| ||||||||||    
T  47661456 gcagtaaactaccgaagttttcctcggcagtaaattgtcgaagcgtcctgaagccaaagcagaggcagtagcttcattttctaaacctgtaatgtgtttc 47661357  T
Q  262 aaacacaa-------catatgtacctgnnnnnnnat--gcataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaaca 352  Q
    ||||||||       ||||||||||||        |  |||||| ||||||| |  ||| ||||||||||||||||||||||||||||||||||||||||    
T  47661356 aaacacaaaacacaacatatgtacctgtttttttttacgcataatggttcaattcacaaaacaaatattggcgcaaatgcacaacttaattaaaccaaca 47661257  T
Q  353 tttttataccattaaacaaagtaaaatatccc-atgaaattaaaagtaatgtc 404  Q
    ||||  |||||||||||||||||||||||||| ||||||| |||| |||||||    
T  47661256 tttt--taccattaaacaaagtaaaatatcccaatgaaatgaaaactaatgtc 47661206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 315 - 404
Target Start/End: Original strand, 16282019 - 16282107
Alignment:
Q  315 aaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatcccatgaaattaaaagtaatgtc 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||| ||||||||||||||||    
T  16282019 aaatattggcgcaaatgcacaacttaattaaaccaacatttttata-cattaaacaaagtaaaaaatctcatggaattaaaagtaatgtc 16282107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 315 - 404
Target Start/End: Original strand, 19521920 - 19522008
Alignment:
Q  315 aaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatcccatgaaattaaaagtaatgtc 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||  ||||||||||||||||||||||||    
T  19521920 aaatattggcgcaaatgcacaacttaattaaaccaacatttttat-gcattaaacaaagtaaaaagtcccatgaaattaaaagtaatgtc 19522008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 315 - 404
Target Start/End: Complemental strand, 52805309 - 52805221
Alignment:
Q  315 aaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatcccatgaaattaaaagtaatgtc 404  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  52805309 aaatattggtgcaaatgcacaacataattaaaccaacatttttatac-attaaacaaagtaaaaaatcccatgaaattaaaagtaatgtc 52805221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 292 - 404
Target Start/End: Original strand, 31780269 - 31780379
Alignment:
Q  292 cataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatcccatgaaat 391  Q
    |||||||||||||||  ||| | ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || |||||||||    
T  31780269 cataacggttcaaataacaaaa-aaatattggcgcaaatgcacaacttaattaaaccaacatttttgta-cattaaacaaagtaaaaaattccatgaaat 31780366  T
Q  392 taaaagtaatgtc 404  Q
    ||||| |||||||    
T  31780367 taaaaataatgtc 31780379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 292 - 401
Target Start/End: Complemental strand, 21144402 - 21144295
Alignment:
Q  292 cataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatcccatgaaat 391  Q
    ||||||| |||||||  ||| | ||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||| ||||||||||||    
T  21144402 cataacgattcaaatcacaaaaaaaatattggcgcaaatgcacaacataattaaaccaaca-ttttata-cattaaacaaagtaaaaaatcccatgaaat 21144305  T
Q  392 taaaagtaat 401  Q
    ||||||||||    
T  21144304 taaaagtaat 21144295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 315 - 404
Target Start/End: Original strand, 50617515 - 50617603
Alignment:
Q  315 aaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatcccatgaaattaaaagtaatgtc 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||| |||| ||||||||||||||||    
T  50617515 aaatattggcgcaaatgcacaacttaattaaaccaacatttttata-cattaaacaaagttaaaaatctcatggaattaaaagtaatgtc 50617603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 320 - 404
Target Start/End: Complemental strand, 47505778 - 47505692
Alignment:
Q  320 ttggcgcaaatgcacaacttaattaaaccaacatttttata--ccattaaacaaagtaaaatatcccatgaaattaaaagtaatgtc 404  Q
    ||||| |||||||||||||||||||  ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  47505778 ttggcacaaatgcacaacttaattaggccaacatttttatataccattaaacaaagtaaaatatcccatgaaattaaaagtaatgtc 47505692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 315 - 404
Target Start/End: Original strand, 94721 - 94810
Alignment:
Q  315 aaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt-aaaatatcccatgaaattaaaagtaatgtc 404  Q
    ||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||| |||| ||||||||||||||||| |||||||    
T  94721 aaatattagcgcaaatgcacaacttaattaaaccaacatttttgta-cattaaacaaagtaaaaaaatcccatgaaattaaaaataatgtc 94810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 315 - 404
Target Start/End: Complemental strand, 470819 - 470731
Alignment:
Q  315 aaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatcccatgaaattaaaagtaatgtc 404  Q
    |||||||||||||||| |||||||||||||||| ||||||||| || |||||||| |||||||| ||||||||||||||||| |||||||    
T  470819 aaatattggcgcaaatacacaacttaattaaacaaacatttttgta-cattaaactaagtaaaaaatcccatgaaattaaaaataatgtc 470731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 292 - 404
Target Start/End: Complemental strand, 19159492 - 19159381
Alignment:
Q  292 cataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt-aaaatatcccatgaaa 390  Q
    |||||||||||||||  ||| | ||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| |||| | |||||||||    
T  19159492 cataacggttcaaataacaaaa-aaatattggtgcaaatgcacaacttaattaaaccaacatttttgta-cattaaacaaagtaaaaagagcccatgaaa 19159395  T
Q  391 ttaaaagtaatgtc 404  Q
    |||||| |||||||    
T  19159394 ttaaaaataatgtc 19159381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 315 - 404
Target Start/End: Complemental strand, 8548536 - 8548447
Alignment:
Q  315 aaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt-aaaatatcccatgaaattaaaagtaatgtc 404  Q
    ||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| |||| | ||||||||||||||| |||||||    
T  8548536 aaatattggtgcaaatgcacaacttaattaaaccaacatttttgta-cattaaacaaagtaaaaaaagcccatgaaattaaaaataatgtc 8548447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 315 - 404
Target Start/End: Complemental strand, 26879162 - 26879073
Alignment:
Q  315 aaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt-aaaatatcccatgaaattaaaagtaatgtc 404  Q
    ||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| |||| | ||||||||||||||| |||||||    
T  26879162 aaatattggtgcaaatgcacaacttaattaaaccaacatttttgta-cattaaacaaagtaaaaaaagcccatgaaattaaaaataatgtc 26879073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 292 - 404
Target Start/End: Original strand, 13636589 - 13636700
Alignment:
Q  292 cataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt-aaaatatcccatgaaa 390  Q
    |||||||||| |||| |||| | ||||||||| |||||||||||||||||||||||||||| |||| || ||||||||||||| |||| | |||||||||    
T  13636589 cataacggtttaaatagcaaaa-aaatattggtgcaaatgcacaacttaattaaaccaacaattttgta-cattaaacaaagtaaaaaaagcccatgaaa 13636686  T
Q  391 ttaaaagtaatgtc 404  Q
    |||||| |||||||    
T  13636687 ttaaaaataatgtc 13636700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 315 - 396
Target Start/End: Original strand, 3728941 - 3729022
Alignment:
Q  315 aaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt-aaaatatcccatgaaattaaaa 396  Q
    ||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| |||| | |||||||||||||||    
T  3728941 aaatattggtgcaaatgcacaacttaattaaaccaacatttttgta-cattaaacaaagtaaaaaaagcccatgaaattaaaa 3729022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 292 - 401
Target Start/End: Complemental strand, 22527466 - 22527358
Alignment:
Q  292 cataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt-aaaatatcccatgaaa 390  Q
    |||||||||||||||  ||| | || |||||| ||||||| ||||||||||||||||||||||||| || ||||||||||||| |||| |||||||||||    
T  22527466 cataacggttcaaataacaaaa-aattattggtgcaaatgtacaacttaattaaaccaacatttttgta-cattaaacaaagtaaaaaaatcccatgaaa 22527369  T
Q  391 ttaaaagtaat 401  Q
    |||||| ||||    
T  22527368 ttaaaaataat 22527358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 202
Target Start/End: Original strand, 21140996 - 21141098
Alignment:
Q  104 acacaagtaatttacctaaatgtccctcggcagt---ctatcgaagtttta-aaaaccggctgcagttaactaccgaggattttctcggcagtaaactgc 199  Q
    |||| |||||||||||||||||||| ||| || |   ||  |||||||||| ||||||| | ||||||||| ||||||||||| ||||||||| ||||||    
T  21140996 acacgagtaatttacctaaatgtccttcgacaattaactgccgaagttttagaaaaccgacggcagttaacgaccgaggatttcctcggcagttaactgc 21141095  T
Q  200 cga 202  Q
    |||    
T  21141096 cga 21141098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 38119607 - 38119653
Alignment:
Q  155 accggctgcagttaactaccgaggattttctcggcagtaaactgccg 201  Q
    |||||||||||||||||||||||| ||| ||||||||| ||||||||    
T  38119607 accggctgcagttaactaccgaggttttcctcggcagttaactgccg 38119653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 109 - 202
Target Start/End: Complemental strand, 50344065 - 50343968
Alignment:
Q  109 agtaatttacctaaatgtccctcggcagt---ctatcgaagtttta-aaaaccggctgcagttaactaccgaggattttctcggcagtaaactgccga 202  Q
    |||||||||||||||||  | ||||||||   ||  |||||||||| ||||||||| |||||||||| |||| ||||| ||| ||||| |||||||||    
T  50344065 agtaatttacctaaatgctcatcggcagttaactgccgaagttttagaaaaccggcggcagttaactcccgaagatttcctcagcagttaactgccga 50343968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 3983111 - 3983160
Alignment:
Q  153 aaaccggctgcagttaactaccgaggattttctcggcagtaaactgccga 202  Q
    |||||||| |||||||||||||||||| || ||||| ||| |||||||||    
T  3983111 aaaccggcggcagttaactaccgaggaattcctcggtagttaactgccga 3983160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 6562164 - 6562201
Alignment:
Q  162 gcagttaactaccgaggattttctcggcagtaaactgc 199  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  6562164 gcagttaactaccgaggatttcctcggcagttaactgc 6562201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 22345330 - 22345293
Alignment:
Q  162 gcagttaactaccgaggattttctcggcagtaaactgc 199  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  22345330 gcagttaactaccgaggattttttcggcagttaactgc 22345293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 31945910 - 31945861
Alignment:
Q  153 aaaccggctgcagttaactaccgaggattttctcggcagtaaactgccga 202  Q
    |||||||| |||||||||||||||||| || ||||| ||| |||||||||    
T  31945910 aaaccggcggcagttaactaccgaggaattcctcggtagttaactgccga 31945861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 45330878 - 45330927
Alignment:
Q  153 aaaccggctgcagttaactaccgaggattttctcggcagtaaactgccga 202  Q
    ||||| |||||||||||||||||||| |||| |||  |||||||||||||    
T  45330878 aaaccagctgcagttaactaccgaggtttttttcgatagtaaactgccga 45330927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 179
Target Start/End: Original strand, 29424402 - 29424430
Alignment:
Q  151 aaaaaccggctgcagttaactaccgagga 179  Q
    |||||||||||||||||||||||||||||    
T  29424402 aaaaaccggctgcagttaactaccgagga 29424430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 179
Target Start/End: Complemental strand, 29438071 - 29438043
Alignment:
Q  151 aaaaaccggctgcagttaactaccgagga 179  Q
    |||||||||||||||||||||||||||||    
T  29438071 aaaaaccggctgcagttaactaccgagga 29438043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 38127537 - 38127485
Alignment:
Q  155 accggctgcagttaactaccgaggattttctcggcagtaaactgccgaagcgt 207  Q
    ||||| |||||||||||||||| | ||| ||||||||| ||||||||| ||||    
T  38127537 accggttgcagttaactaccgaagttttcctcggcagttaactgccgatgcgt 38127485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 47661517 - 47661473
Alignment:
Q  153 aaaccggctgcagttaactaccgaggattttctcggcagtaaact 197  Q
    |||| ||||||| |||| |||||||| ||||||||||||||||||    
T  47661517 aaactggctgcaattaattaccgaggtttttctcggcagtaaact 47661473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 289 - 404
Target Start/End: Original strand, 36653096 - 36653211
Alignment:
Q  289 atgcataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatcccatga 388  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36653096 atgcataacggttcaaatggcaaaacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatcccatga 36653195  T
Q  389 aattaaaagtaatgtc 404  Q
    ||||||||||||||||    
T  36653196 aattaaaagtaatgtc 36653211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 104 - 269
Target Start/End: Original strand, 36652877 - 36653046
Alignment:
Q  104 acacaagtaatttacctaaatgtccctcggcagt---ctatcgaagtttta-aaaaccggctgcagttaactaccgaggattttctcggcagtaaactgc 199  Q
    |||| |||||||||| ||||||||| ||||||||   || ||||||||||| |||||||| |||||||||||| ||||||||| ||| ||||||||||||    
T  36652877 acacgagtaatttacttaaatgtccatcggcagttaactgtcgaagttttagaaaaccggatgcagttaactatcgaggatttcctcagcagtaaactgc 36652976  T
Q  200 cgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttcaaacacaa 269  Q
    | ||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  36652977 caaagcgtcctgaagccaagacagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaa 36653046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 300 - 404
Target Start/End: Original strand, 6637690 - 6637794
Alignment:
Q  300 ttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatcccatgaaattaaaagta 399  Q
    |||||||  ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  6637690 ttcaaatcacaaaacaaatattgacgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatcctatgaaatcaaaagta 6637789  T
Q  400 atgtc 404  Q
    |||||    
T  6637790 atgtc 6637794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 292 - 404
Target Start/End: Original strand, 10825520 - 10825630
Alignment:
Q  292 cataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatcccatgaaat 391  Q
    |||||||||||||||  ||| | ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  10825520 cataacggttcaaataacaaaa-aaatattggcgcaaatgcacaacttaactaaaccaacatttttata-cattaaacaaagtaaaaaatcccatgaaat 10825617  T
Q  392 taaaagtaatgtc 404  Q
    |||||||||||||    
T  10825618 taaaagtaatgtc 10825630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 166 - 269
Target Start/End: Complemental strand, 40539104 - 40539001
Alignment:
Q  166 ttaactaccgaggattttctcggcagtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttcaaac 265  Q
    ||||||||||||||||| ||| ||||||||||| ||||||||| |||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||    
T  40539104 ttaactaccgaggatttcctcagcagtaaactgtcgaagcgtcctgaagccaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaac 40539005  T
Q  266 acaa 269  Q
    ||||    
T  40539004 acaa 40539001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 162 - 264
Target Start/End: Original strand, 6637593 - 6637695
Alignment:
Q  162 gcagttaactaccgaggattttctcggcagtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttc 261  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| |||||| |||    
T  6637593 gcagttaactatcgaggatttcctcggcagtaaactgccgaagcgtcctgaagtcaagacagaggcagtaggttcatttcctgaacctgtaatgtgcttc 6637692  T
Q  262 aaa 264  Q
    |||    
T  6637693 aaa 6637695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 292 - 404
Target Start/End: Original strand, 29398207 - 29398317
Alignment:
Q  292 cataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatcccatgaaat 391  Q
    |||||||||||||||  ||| | |||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||| |||| |||    
T  29398207 cataacggttcaaatcacaaaa-aaatattggcacaaatgcacaacttaattaaaccaatatttttata-cattaaacaaagtaaaaaatctcatggaat 29398304  T
Q  392 taaaagtaatgtc 404  Q
    |||||||||||||    
T  29398305 taaaagtaatgtc 29398317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 292 - 378
Target Start/End: Original strand, 32953032 - 32953116
Alignment:
Q  292 cataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaa 378  Q
    |||||||||||||||  ||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32953032 cataacggttcaaatcacaaaa-aaatattggcgcaaatgcacaacttaattaaaccaacatttttata-cattaaacaaagtaaaa 32953116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 292 - 404
Target Start/End: Complemental strand, 39950942 - 39950831
Alignment:
Q  292 cataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt-aaaatatcccatgaaa 390  Q
    |||||||||||||||  ||| | |||||||| |||||||||||||||||||||||| ||||||||| || ||||||||||||| |||| |||||||||||    
T  39950942 cataacggttcaaataacaaaa-aaatattgacgcaaatgcacaacttaattaaacaaacatttttgta-cattaaacaaagtaaaaaaatcccatgaaa 39950845  T
Q  391 ttaaaagtaatgtc 404  Q
    |||||| |||||||    
T  39950844 ttaaaaataatgtc 39950831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 315 - 404
Target Start/End: Complemental strand, 5355424 - 5355335
Alignment:
Q  315 aaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt-aaaatatcccatgaaattaaaagtaatgtc 404  Q
    ||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| |||| | ||||||||||||||| |||||||    
T  5355424 aaatattggtgcaaatgcacaacttaattaaaccaacatttttgta-cattaaacaaagtaaaaaaagcccatgaaattaaaaataatgtc 5355335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 315 - 404
Target Start/End: Original strand, 30493565 - 30493654
Alignment:
Q  315 aaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt-aaaatatcccatgaaattaaaagtaatgtc 404  Q
    ||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| |||| | ||||||||||||||| |||||||    
T  30493565 aaatattggtgcaaatgcacaacttaattaaaccaacatttttgta-cattaaacaaagtaaaaaaagcccatgaaattaaaaataatgtc 30493654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 315 - 404
Target Start/End: Original strand, 43536308 - 43536397
Alignment:
Q  315 aaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt-aaaatatcccatgaaattaaaagtaatgtc 404  Q
    ||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| |||| | ||||||||||||||| |||||||    
T  43536308 aaatattggtgcaaatgcacaacttaattaaaccaacatttttgta-cattaaacaaagtaaaaaaagcccatgaaattaaaaataatgtc 43536397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 292 - 404
Target Start/End: Complemental strand, 28471995 - 28471883
Alignment:
Q  292 cataacggttcaaatggcaacacaaatattggcgcaaatgcacaactt-aattaaaccaacatttttataccattaaacaaagtaaaa-tatcccatgaa 389  Q
    |||||||||||||||  ||| | ||||||||| ||||||||||||||| ||| |||||||||||||| || |||||||||||||||||  | ||||||||    
T  28471995 cataacggttcaaataacaa-ataaatattggtgcaaatgcacaacttaaatcaaaccaacatttttgta-cattaaacaaagtaaaacgagcccatgaa 28471898  T
Q  390 attaaaagtaatgtc 404  Q
    ||||||| |||||||    
T  28471897 attaaaaataatgtc 28471883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 325 - 385
Target Start/End: Original strand, 16327621 - 16327679
Alignment:
Q  325 gcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatccca 385  Q
    ||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||    
T  16327621 gcaaatgcacaacttaattaaaccaacatttt--taccattaaagaaagtaaaatatccca 16327679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 104 - 202
Target Start/End: Complemental strand, 29401707 - 29401605
Alignment:
Q  104 acacaagtaatttacctaaatgtccctcggcagt---ctatcgaagtttta-aaaaccggctgcagttaactaccgaggattttctcggcagtaaactgc 199  Q
    |||| |||||||||| |||||| |||||||||||   || ||||||||||| ||||||||| |||||||||| ||||| |||| ||||||||| ||||||    
T  29401707 acacgagtaatttacttaaatgcccctcggcagttaactgtcgaagttttagaaaaccggcggcagttaactcccgagaatttcctcggcagttaactgc 29401608  T
Q  200 cga 202  Q
    |||    
T  29401607 cga 29401605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 269
Target Start/End: Original strand, 16327439 - 16327559
Alignment:
Q  153 aaaccggctgcagttaactaccgagga----ttttctcggcagtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacc 248  Q
    ||||| ||||||||||||||||||||     ||| ||||||||||||||| | | ||||| | |||||||   ||||||||||| ||||||| |||| |     
T  16327439 aaacctgctgcagttaactaccgaggtaggttttcctcggcagtaaactgtcaatgcgtcctcaagccaatgtagaggcagtagcttcattttctgatcg 16327538  T
Q  249 tgcaatgtgtttcaaacacaa 269  Q
    || ||||||||||||||||||    
T  16327539 tgtaatgtgtttcaaacacaa 16327559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 17420638 - 17420599
Alignment:
Q  162 gcagttaactaccgaggattttctcggcagtaaactgccg 201  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  17420638 gcagttaactaccgaggattttctcggcagttaactgccg 17420599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 104 - 197
Target Start/End: Original strand, 6637505 - 6637602
Alignment:
Q  104 acacaagtaatttacctaaatgtccctcggcagt---ctatcgaagttt-taaaaaccggctgcagttaactaccgaggattttctcggcagtaaact 197  Q
    |||| ||||||||||||||| ||||||||| |||   ||  |||||||| |  |||||||||||||||||||||||||| ||| || |||||| ||||    
T  6637505 acacgagtaatttacctaaacgtccctcggtagttaactgccgaagtttgtggaaaccggctgcagttaactaccgaggttttccttggcagttaact 6637602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 202
Target Start/End: Original strand, 20937868 - 20937971
Alignment:
Q  104 acacaagtaatttacctaaatgtccctcggcagt---ctatcgaagttttaa--aaaccggctgcagttaactaccgaggattttctcggcagtaaactg 198  Q
    |||| ||||| ||||||||||| || ||||||||   ||  ||||||||| |  |||||||| |||| | |||||||||||||| ||||||||| |||||    
T  20937868 acacgagtaaattacctaaatgcccttcggcagttaactgccgaagtttttagtaaaccggcggcagcttactaccgaggatttcctcggcagttaactg 20937967  T
Q  199 ccga 202  Q
    ||||    
T  20937968 ccga 20937971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 213501 - 213452
Alignment:
Q  153 aaaccggctgcagttaactaccgaggattttctcggcagtaaactgccga 202  Q
    |||||||| |||||||||||||||||| || ||||| ||| |||||||||    
T  213501 aaaccggcggcagttaactaccgaggaattcctcggtagttaactgccga 213452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 3943195 - 3943232
Alignment:
Q  162 gcagttaactaccgaggattttctcggcagtaaactgc 199  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  3943195 gcagttaactaccgaggtttttctcggcagttaactgc 3943232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 10624514 - 10624465
Alignment:
Q  153 aaaccggctgcagttaactaccgaggattttctcggcagtaaactgccga 202  Q
    |||||||| |||||||||||||||||| || ||||| ||| |||||||||    
T  10624514 aaaccggcggcagttaactaccgaggaattcctcggtagttaactgccga 10624465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 18003321 - 18003272
Alignment:
Q  153 aaaccggctgcagttaactaccgaggattttctcggcagtaaactgccga 202  Q
    |||||||| |||||||||||||||||| || ||||| ||| |||||||||    
T  18003321 aaaccggcggcagttaactaccgaggaattcctcggtagttaactgccga 18003272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 31974292 - 31974247
Alignment:
Q  157 cggctgcagttaactaccgaggattttctcggcagtaaactgccga 202  Q
    |||||||||||||||||||||||   |||||||||| |||||||||    
T  31974292 cggctgcagttaactaccgaggaaaatctcggcagttaactgccga 31974247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 39793987 - 39794036
Alignment:
Q  153 aaaccggctgcagttaactaccgaggattttctcggcagtaaactgccga 202  Q
    |||||||| ||||  ||||||||||||||| ||||| |||||||||||||    
T  39793987 aaaccggcggcagcaaactaccgaggatttcctcggtagtaaactgccga 39794036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 39800701 - 39800652
Alignment:
Q  153 aaaccggctgcagttaactaccgaggattttctcggcagtaaactgccga 202  Q
    |||||||| ||||  ||||||||||||||| ||||| |||||||||||||    
T  39800701 aaaccggcggcagcaaactaccgaggatttcctcggtagtaaactgccga 39800652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 41500237 - 41500274
Alignment:
Q  162 gcagttaactaccgaggattttctcggcagtaaactgc 199  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  41500237 gcagttaactaccgaggtttttctcggcagttaactgc 41500274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 179
Target Start/End: Original strand, 2648820 - 2648848
Alignment:
Q  151 aaaaaccggctgcagttaactaccgagga 179  Q
    |||||||||||||||||||||||||||||    
T  2648820 aaaaaccggctgcagttaactaccgagga 2648848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 9088737 - 9088785
Alignment:
Q  154 aaccggctgcagttaactaccgaggattttctcggcagtaaactgccga 202  Q
    ||||||||||||||||||||||||||   | ||||||||||||| ||||    
T  9088737 aaccggctgcagttaactaccgaggaaaatttcggcagtaaactaccga 9088785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 15831152 - 15831200
Alignment:
Q  154 aaccggctgcagttaactaccgaggattttctcggcagtaaactgccga 202  Q
    ||||||| |||| | |||||||||||||| ||||||||| |||||||||    
T  15831152 aaccggcggcagcttactaccgaggatttcctcggcagttaactgccga 15831200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 29407972 - 29407910
Alignment:
Q  121 aaatgtccctcggcagt---ctatcgaagttttaaa-aaccggctgcagttaactaccgagga 179  Q
    |||||||||||||||||   || ||||| ||||||| ||||||||||||||||||| ||||||    
T  29407972 aaatgtccctcggcagttaactgtcgaaattttaaagaaccggctgcagttaactaacgagga 29407910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 40221177 - 40221129
Alignment:
Q  155 accggctgcagttaactaccgaggattttctcggcagtaaactgccgaa 203  Q
    |||||||||||||||||||||||||    ||||||||| ||||||||||    
T  40221177 accggctgcagttaactaccgaggaaaacctcggcagttaactgccgaa 40221129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 6e-50; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 166 - 404
Target Start/End: Original strand, 18001276 - 18001520
Alignment:
Q  166 ttaactaccgaggattttctcggcagtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttcaaac 265  Q
    ||||||||||||||||| ||||||||||||||||  ||| |||||||||||||| |||||||||||| |||||||||| ||| || ||||||||||||||    
T  18001276 ttaactaccgaggatttcctcggcagtaaactgcataagtgtcatgaagccaaggcagaggcagtagcttcatttcctaaacttgtaatgtgtttcaaac 18001375  T
Q  266 acaaca-------tatgtacctgnnnnnnn-atgcataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacattttt 357  Q
    |||| |       |||||| |||        |||||||| |||||||||  ||| |||||||||||||||||||||||||| ||||||||||| |||||     
T  18001376 acaaaacacaaaatatgtatctgctttttttatgcataatggttcaaatcacaaaacaaatattggcgcaaatgcacaactgaattaaaccaatatttt- 18001474  T
Q  358 ataccattaaacaaagtaaaatatcccatgaaattaaaagtaatgtc 404  Q
     | |||||||||||||| |||||||||||||||| ||||||||||||    
T  18001475 -ttccattaaacaaagtcaaatatcccatgaaatgaaaagtaatgtc 18001520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 163 - 404
Target Start/End: Original strand, 24085289 - 24085536
Alignment:
Q  163 cagttaactaccgaggattttctcggcagtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttca 262  Q
    |||||||||||| ||  ||| |||| |||||||||||||||||||| ||||||||| ||||||||||||| |||||||||| |||||| ||||| |||||    
T  24085289 cagttaactacccagattttcctcg-cagtaaactgccgaagcgtcctgaagccaaaacagaggcagtagcttcatttcctaaacctgtaatgtatttca 24085387  T
Q  263 aacacaa------catatgtacctgnnnnnnnat--gcataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatt 354  Q
    |||||||      ||||||||| |         |  |||||| |||||||||    | ||||||||||||||||||||||||||||||||||||||||||    
T  24085388 aacacaaacaaaacatatgtacttatttttttttacgcataatggttcaaatcatgaaacaaatattggcgcaaatgcacaacttaattaaaccaacatt 24085487  T
Q  355 tttataccattaaacaaagtaaaatatccc-atgaaattaaaagtaatgtc 404  Q
    ||  |||||||||||||||||||||||||| ||||||| |||| |||||||    
T  24085488 tt--taccattaaacaaagtaaaatatcccaatgaaatgaaaactaatgtc 24085536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 27224203 - 27224106
Alignment:
Q  1 caaattaccattcgactagctggcatccatatagtgagcataaacttagttagcgattgccaacaattaatcaacttcatttttccatcattgatgtt 98  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  27224203 caaactaccatttgactagctggcatccatatagtgagcataaacttagatagcgattgccaacaattaatcaactttattttcccatcattgatgtt 27224106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 292 - 404
Target Start/End: Complemental strand, 3502435 - 3502325
Alignment:
Q  292 cataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatcccatgaaat 391  Q
    |||||||||||||||  ||| | ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||    
T  3502435 cataacggttcaaataacaaaa-aaatattggcgcaaatgcacaacttaattaaaccaacatttttgta-cattaaacaaagtaaaaaatcccatgaaat 3502338  T
Q  392 taaaagtaatgtc 404  Q
    ||||| |||||||    
T  3502337 taaaaataatgtc 3502325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 292 - 404
Target Start/End: Complemental strand, 31771511 - 31771401
Alignment:
Q  292 cataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatcccatgaaat 391  Q
    |||||||||||||||  ||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||| |||    
T  31771511 cataacggttcaaatcacaaaa-aaatattggcgcaaatgcacaacttaattaaaccaacatttttata-cattaaacaaagtaaaaaatctcatggaat 31771414  T
Q  392 taaaagtaatgtc 404  Q
    |||||||||||||    
T  31771413 taaaagtaatgtc 31771401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 292 - 404
Target Start/End: Complemental strand, 22304714 - 22304603
Alignment:
Q  292 cataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt-aaaatatcccatgaaa 390  Q
    ||||||||||||||| |||| | ||||||||| |||||||||||||||||||||||||||| |||| || ||||||||||||| |||| | |||||||||    
T  22304714 cataacggttcaaatagcaaaa-aaatattggtgcaaatgcacaacttaattaaaccaacaattttgta-cattaaacaaagtaaaaaaagcccatgaaa 22304617  T
Q  391 ttaaaagtaatgtc 404  Q
    |||||| |||||||    
T  22304616 ttaaaaataatgtc 22304603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 315 - 404
Target Start/End: Original strand, 30826230 - 30826319
Alignment:
Q  315 aaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt-aaaatatcccatgaaattaaaagtaatgtc 404  Q
    ||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| |||| | ||||||||||||||| |||||||    
T  30826230 aaatattggtgcaaatgcacaacttaattaaaccaacatttttgta-cattaaacaaagtaaaaaaagcccatgaaattaaaaataatgtc 30826319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 162 - 385
Target Start/End: Complemental strand, 3385016 - 3384788
Alignment:
Q  162 gcagttaactaccgaggattttctcggcagtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttc 261  Q
    ||||||||||||||| | ||| ||| ||| |||||| | || ||||| |||||||||  |||||||||||| ||||||| |||| | || ||||||||||    
T  3385016 gcagttaactaccgaagttttcctcagcaataaactactgatgcgtcctgaagccaatgcagaggcagtagcttcattttctgatcttgtaatgtgtttc 3384917  T
Q  262 aaacacaa-------catatgtacctgnnnnnnn-atgcataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacat 353  Q
    ||||||||       |||||  |||||        |  || || |||||||||  ||| ||||| |||||||||||||||||||||||||||||||||||    
T  3384916 aaacacaaaacacaacatattgacctgttttttttacacacaatggttcaaatcacaaaacaaa-attggcgcaaatgcacaacttaattaaaccaacat 3384818  T
Q  354 ttttataccattaaacaaagtaaaatatccca 385  Q
    |||  |||||||||| ||||||||||||||||    
T  3384817 ttt--taccattaaagaaagtaaaatatccca 3384788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 190 - 269
Target Start/End: Complemental strand, 32643437 - 32643358
Alignment:
Q  190 agtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttcaaacacaa 269  Q
    |||||||| |||||||||| ||||| |||| |||||||||||| ||||||||||||||||| ||||||||| ||||||||    
T  32643437 agtaaactaccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgttttaaacacaa 32643358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 166 - 243
Target Start/End: Original strand, 17996635 - 17996712
Alignment:
Q  166 ttaactaccgaggattttctcggcagtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcct 243  Q
    |||||||| |||||||| ||||||||||||||||||||  ||| |||||||||| |||||||||||| ||||||||||    
T  17996635 ttaactactgaggatttcctcggcagtaaactgccgaattgtcctgaagccaaggcagaggcagtagcttcatttcct 17996712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 17996716 - 17996774
Alignment:
Q  313 acaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt 374  Q
    |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||    
T  17996716 acaaatattggcgcaaatgcacaacttaattaaaccaacattt---taccattaaacaaagt 17996774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 190 - 269
Target Start/End: Original strand, 32641366 - 32641444
Alignment:
Q  190 agtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttcaaacacaa 269  Q
    ||||||||||||||||||| ||||| |||| |||||||||||| |||||||||| || ||| ||||||||||||||||||    
T  32641366 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcct-aatctgtaatgtgtttcaaacacaa 32641444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 104 - 202
Target Start/End: Original strand, 3501122 - 3501224
Alignment:
Q  104 acacaagtaatttacctaaatgtccctcggcagt---ctatcgaagttttaa-aaaccggctgcagttaactaccgaggattttctcggcagtaaactgc 199  Q
    |||| |||| ||||| |||||| || ||||||||   || |||||||||||  ||||| || ||||||||||||||||||||||||||||||| ||||||    
T  3501122 acacgagtattttacgtaaatgcccttcggcagttaactgtcgaagttttagtaaaccagcggcagttaactaccgaggattttctcggcagttaactgc 3501221  T
Q  200 cga 202  Q
    |||    
T  3501222 cga 3501224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 7361209 - 7361241
Alignment:
Q  147 ttttaaaaaccggctgcagttaactaccgagga 179  Q
    ||||||||||||||||||||||||| |||||||    
T  7361209 ttttaaaaaccggctgcagttaactgccgagga 7361241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 179
Target Start/End: Original strand, 9048097 - 9048125
Alignment:
Q  151 aaaaaccggctgcagttaactaccgagga 179  Q
    |||||||||||||||||||||||||||||    
T  9048097 aaaaaccggctgcagttaactaccgagga 9048125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 179
Target Start/End: Complemental strand, 9049135 - 9049107
Alignment:
Q  151 aaaaaccggctgcagttaactaccgagga 179  Q
    |||||||||||||||||||||||||||||    
T  9049135 aaaaaccggctgcagttaactaccgagga 9049107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 24085253 - 24085297
Alignment:
Q  153 aaaccggctgcagttaactaccgaggattttctcggcagtaaact 197  Q
    |||||| ||||||||||||||||||||||| |||| |||| ||||    
T  24085253 aaaccgactgcagttaactaccgaggatttcctcgacagttaact 24085297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 24721962 - 24722006
Alignment:
Q  163 cagttaactaccgaggattttctcggcagtaaactgccgaagcgt 207  Q
    |||||||||||||||| ||| ||||||||| ||||||||| ||||    
T  24721962 cagttaactaccgaggttttcctcggcagttaactgccgatgcgt 24722006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 30829699 - 30829651
Alignment:
Q  154 aaccggctgcagttaactaccgaggattttctcggcagtaaactgccga 202  Q
    ||||||| |||| | |||||||||||||| ||||||||| |||||||||    
T  30829699 aaccggcggcagcttactaccgaggatttcctcggcagttaactgccga 30829651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 162 - 404
Target Start/End: Complemental strand, 5200370 - 5200110
Alignment:
Q  162 gcagttaactaccgaggattttctcggcagtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttc 261  Q
    |||||||| || ||| |||||  |||||||||||||||| ||||||| |||||||||||||||||||  |  ||||||||||||||||||||||||||||    
T  5200370 gcagttaattatcgaagatttcatcggcagtaaactgccaaagcgtcctgaagccaagacagaggcaacaacttcatttcctgaacctgcaatgtgtttc 5200271  T
Q  262 aaac-----------------acaacatatgtacctgnnnnnnn-atgcataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaatt 343  Q
    ||||                 ||||||||||||| ||        | ||||||||||||||| ||||| ||||||||||||||||||||| || ||||||    
T  5200270 aaacagtttcaaacacaaaatacaacatatgtacgtgttctttttacgcataacggttcaaacggcaaaacaaatattggcgcaaatgcaaaaattaatt 5200171  T
Q  344 aaaccaacatttttataccattaaacaaagtaaaatatcccatgaaattaaaagtaatgtc 404  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  5200170 aaaccaacatttttataccattaaacaaagtaagatatcccatgaaattaaaagtattgtc 5200110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 166 - 404
Target Start/End: Original strand, 19227002 - 19227247
Alignment:
Q  166 ttaactaccgaggattttctcggcagtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttcaaac 265  Q
    ||||||| |||||||||   |||  |||||||||||||||||| |||||||||| |||||||||||| |||||||| | |||||  ||||||||||||||    
T  19227002 ttaactatcgaggatttctgcggttgtaaactgccgaagcgtcctgaagccaaggcagaggcagtagcttcatttcataaacctttaatgtgtttcaaac 19227101  T
Q  266 acaa-------catatgtacctgnnnnnnn--atgcataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttt 356  Q
    ||||       ||||||||||||         |||||||| |||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19227102 acaaaacacaacatatgtacctgtttttttttatgcataatggttcaaatcacaaaacaaatattggcgcaaatgcacaacttaattaaaccaacatttt 19227201  T
Q  357 tataccattaaacaaagtaaaatatcccatgaaattaaaagtaatgtc 404  Q
      || ||| ||||||||| |||||||||||||||| ||||||||||||    
T  19227202 --tagcatcaaacaaagtcaaatatcccatgaaatgaaaagtaatgtc 19227247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 292 - 404
Target Start/End: Original strand, 38407448 - 38407558
Alignment:
Q  292 cataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatcccatgaaat 391  Q
    |||||||||||||||  ||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  38407448 cataacggttcaaatcacaaaa-aaatattggcgcaaatgcacaacttaattaaaccaacatttttata-cattaaacaaagtaaaaaatcccatgaaat 38407545  T
Q  392 taaaagtaatgtc 404  Q
    |||||||||||||    
T  38407546 taaaagtaatgtc 38407558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 292 - 404
Target Start/End: Complemental strand, 7762014 - 7761902
Alignment:
Q  292 cataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt--aaaatatcccatgaa 389  Q
    |||||||||||||||  ||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||| ||||||||||    
T  7762014 cataacggttcaaataacaaaa-aaatattggcgcaaatgcacaacttaattaaaccaacatttttata-cattaaacaaagtaaaaaaaatcccatgaa 7761917  T
Q  390 attaaaagtaatgtc 404  Q
    |||||||||||||||    
T  7761916 attaaaagtaatgtc 7761902  T

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Target: chr5; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 221 - 404
Target Start/End: Original strand, 40622530 - 40622720
Alignment:
Q  221 cagaggcagtagtttcatttcctgaacctgcaatgtgtttcaaacacaa-------catatgtacctgnnnnnnn-atgcataacggttcaaatggcaac 312  Q
    |||||||||||| |||||||||| |||||| ||||||||||||||||||       ||||||||| ||        | |||||| |||||||||  |||     
T  40622530 cagaggcagtagcttcatttcctaaacctgtaatgtgtttcaaacacaaaacacaacatatgtacttgttttttttacgcataatggttcaaatcacaaa 40622629  T
Q  313 acaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatccc-atgaaattaaaagtaatgtc 404  Q
    | ||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||| |||||||    
T  40622630 ataaatattggcgcaaatgcacatcttaattaaaccaacatttt--taccattaaacaaagtaaaatatcccaatgaaattaaaactaatgtc 40622720  T

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Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 291 - 385
Target Start/End: Original strand, 511225 - 511317
Alignment:
Q  291 gcataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatccca 385  Q
    |||||| |||||||||  ||| |||||||||||| |||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||    
T  511225 gcataatggttcaaatcacaaaacaaatattggcacaaatgcacaacttaattaaaccaacatttt--tagcattaaacaaagtaaaatatccca 511317  T

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Target: chr5; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 162 - 280
Target Start/End: Original strand, 511081 - 511199
Alignment:
Q  162 gcagttaactaccgaggattttctcggcagtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttc 261  Q
    ||||||||||||||||| ||| ||  |||||||||||||||||| || |||||||||  || ||||||||| |||||||||| ||| || |||||||| |    
T  511081 gcagttaactaccgaggttttcctgagcagtaaactgccgaagcatcctgaagccaaagcaaaggcagtagcttcatttcctaaacatgtaatgtgttgc 511180  T
Q  262 aaacacaacatatgtacct 280  Q
    ||||||||| |||||||||    
T  511181 aaacacaacttatgtacct 511199  T

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Target: chr5; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 292 - 404
Target Start/End: Original strand, 8577132 - 8577243
Alignment:
Q  292 cataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt-aaaatatcccatgaaa 390  Q
    |||||||||||||||  ||| | ||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| |||| | |||||||||    
T  8577132 cataacggttcaaataacaaaa-aaatattggtgcaaatgcacaacttaattaaaccaacatttttgta-cattaaacaaagtaaaaaaagcccatgaaa 8577229  T
Q  391 ttaaaagtaatgtc 404  Q
    |||||| |||||||    
T  8577230 ttaaaaataatgtc 8577243  T

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Target: chr5; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 292 - 404
Target Start/End: Complemental strand, 41799540 - 41799432
Alignment:
Q  292 cataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaatatcccatgaaat 391  Q
    |||||||||||||||  ||| | |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||  ||||||| ||| |||| |||    
T  41799540 cataacggttcaaatcacaaaa-aaatattggcgcaaatgcacaacttaattaaaccaatatttttata-cattaaac--agtaaaaaatctcatggaat 41799445  T
Q  392 taaaagtaatgtc 404  Q
    |||||||||||||    
T  41799444 taaaagtaatgtc 41799432  T

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Target: chr5; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 166 - 269
Target Start/End: Original strand, 8698938 - 8699041
Alignment:
Q  166 ttaactaccgaggattttctcggcagtaaactgccgaagcgtcatgaagccaagacagaggcagtagtttcatttcctgaacctgcaatgtgtttcaaac 265  Q
    |||||||| ||||||||  ||| |||||||||| ||||||||| ||||| |||| |||||||| ||| ||||||||||||||||| |||||||||||||     
T  8698938 ttaactactgaggatttcatcgacagtaaactgtcgaagcgtcctgaagtcaaggcagaggcaatagcttcatttcctgaacctgtaatgtgtttcaaaa 8699037  T
Q  266 acaa 269  Q
    ||||    
T  8699038 acaa 8699041  T

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Target: chr5; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 292 - 404
Target Start/End: Original strand, 8256 - 8367
Alignment:
Q  292 cataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt-aaaatatcccatgaaa 390  Q
    |||||||||||||||  ||| | |||| |||| ||||||||||||||||||||||||||||||||| || ||||||||||| | |||| |||||||||||    
T  8256 cataacggttcaaataacaaaa-aaatcttggtgcaaatgcacaacttaattaaaccaacatttttgta-cattaaacaaattaaaaaaatcccatgaaa 8353  T
Q  391 ttaaaagtaatgtc 404  Q
    |||||| |||||||    
T  8354 ttaaaaataatgtc 8367  T

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Target: chr5; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 292 - 404
Target Start/End: Original strand, 27662371 - 27662482
Alignment:
Q  292 cataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt-aaaatatcccatgaaa 390  Q
    |||||||||||||||  ||| | ||||||||| ||||||||||||||||||||||||||||| ||| || ||||||||||||| |||| | |||||||||    
T  27662371 cataacggttcaaataacaaaa-aaatattggtgcaaatgcacaacttaattaaaccaacatatttgta-cattaaacaaagtaaaaaaagcccatgaaa 27662468  T
Q  391 ttaaaagtaatgtc 404  Q
    |||||| |||||||    
T  27662469 ttaaaaataatgtc 27662482  T

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Target: chr5; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 292 - 404
Target Start/End: Complemental strand, 30708522 - 30708411
Alignment:
Q  292 cataacggttcaaatggcaacacaaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagtaaaa-tatcccatgaaa 390  Q
    |||||||||||||||  ||| | ||||||||| |||||||||||| |||||||||||||||||||| || |||||||||||||||||  | |||||||||    
T  30708522 cataacggttcaaataacaaaa-aaatattggtgcaaatgcacaatttaattaaaccaacatttttgta-cattaaacaaagtaaaacgagcccatgaaa 30708425  T
Q  391 ttaaaagtaatgtc 404  Q
    |||||| |||||||    
T  30708424 ttaaaaataatgtc 30708411  T

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Target: chr5; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 315 - 404
Target Start/End: Original strand, 28238345 - 28238434
Alignment:
Q  315 aaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt-aaaatatcccatgaaattaaaagtaatgtc 404  Q
    ||||||||| ||||||||||||||||||||||| ||||||||| || ||||||||||||| |||| | ||||||||||||||| |||||||    
T  28238345 aaatattggtgcaaatgcacaacttaattaaacgaacatttttgta-cattaaacaaagtaaaaaaagcccatgaaattaaaaataatgtc 28238434  T

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Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 104 - 192
Target Start/End: Complemental strand, 5200458 - 5200366
Alignment:
Q  104 acacaagtaatttacctaaatgtccctcggcagt---ctatcgaagtttta-aaaaccggctgcagttaactaccgaggattttctcggcagt 192  Q
    ||||||||||||||||||||||| | |||| |||   || ||||||||||| |||| ||||||||||||||| |||||||||| |||||||||    
T  5200458 acacaagtaatttacctaaatgttcatcggtagttaactgtcgaagttttagaaaatcggctgcagttaactcccgaggatttcctcggcagt 5200366  T

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Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 104 - 204
Target Start/End: Complemental strand, 38408569 - 38408465
Alignment:
Q  104 acacaagtaatttacctaaatgtccctcggcagt---ctatcgaagtttta-aaaaccggctgcagttaactaccgaggattttctcggcagtaaactgc 199  Q
    |||| ||||||||||||||||| || |||||| |   ||  |||||||||| ||||||| | |||||||||| |||||||||| ||||||||| ||||||    
T  38408569 acacgagtaatttacctaaatgcccttcggcaattaactgccgaagttttagaaaaccgacggcagttaactcccgaggatttcctcggcagttaactgc 38408470  T
Q  200 cgaag 204  Q
    |||||    
T  38408469 cgaag 38408465  T

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Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 158 - 201
Target Start/End: Original strand, 36503102 - 36503145
Alignment:
Q  158 ggctgcagttaactaccgaggattttctcggcagtaaactgccg 201  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||    
T  36503102 ggctgcagttaactaccgaggtttttctcggcagttaactgccg 36503145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 30705161 - 30705210
Alignment:
Q  153 aaaccggctgcagttaactaccgaggattttctcggcagtaaactgccga 202  Q
    |||||||| ||||||||||||||||||||| ||||||||| |||| ||||    
T  30705161 aaaccggcggcagttaactaccgaggatttcctcggcagttaactaccga 30705210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 13838473 - 13838423
Alignment:
Q  153 aaaccggctgcagttaactaccgaggattttctcggcagtaaactgccgaa 203  Q
    |||||||||||||||||||||||||||    ||||||||| ||||||||||    
T  13838473 aaaccggctgcagttaactaccgaggaaaacctcggcagttaactgccgaa 13838423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 42937277 - 42937223
Alignment:
Q  147 ttttaaaaaccggctgcagttaactaccgaggattttctcggcagtaaactgccg 201  Q
    |||| ||||||||| ||| |||||||||||||||||  |||||||| ||||||||    
T  42937277 ttttgaaaaccggcggcacttaactaccgaggatttcttcggcagttaactgccg 42937223  T

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Target: scaffold0199 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 315 - 401
Target Start/End: Original strand, 12727 - 12812
Alignment:
Q  315 aaatattggcgcaaatgcacaacttaattaaaccaacatttttataccattaaacaaagt--aaaatatcccatgaaattaaaagtaat 401  Q
    |||||||||||||||||| |||||||||||||||||||||||| || ||||  |||||||  |||| ||||||||||||||||| ||||    
T  12727 aaatattggcgcaaatgcgcaacttaattaaaccaacatttttgta-catt--acaaagtaaaaaaaatcccatgaaattaaaaataat 12812  T

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Target: scaffold0341 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 17354 - 17391
Alignment:
Q  162 gcagttaactaccgaggattttctcggcagtaaactgc 199  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  17354 gcagttaactaccgaggatttcctcggcagttaactgc 17391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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