View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13381_high_16 (Length: 395)

Name: NF13381_high_16
Description: NF13381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13381_high_16
NF13381_high_16
[»] chr5 (10 HSPs)
chr5 (18-376)||(1162356-1162714)
chr5 (144-280)||(1850468-1850604)
chr5 (23-120)||(39400885-39400982)
chr5 (63-370)||(40412480-40412778)
chr5 (122-199)||(40419467-40419544)
chr5 (284-343)||(1850781-1850840)
chr5 (230-370)||(39880558-39880689)
chr5 (76-269)||(38988459-38988658)
chr5 (22-88)||(40419394-40419460)
chr5 (332-376)||(40419663-40419707)
[»] chr4 (2 HSPs)
chr4 (125-245)||(25911041-25911161)
chr4 (22-77)||(25911177-25911232)
[»] chr8 (1 HSPs)
chr8 (144-234)||(34401891-34401981)


Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 18 - 376
Target Start/End: Complemental strand, 1162714 - 1162356
Alignment:
Q  18 actactttttctgtagtcaacgtcatgctcaaaagcagtttgtgcattttataaaggaactagttcctggccgcgaagaatctctttaagataagcaact 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1162714 actactttttctgtagtcaacgtcatgctcaaaagcagtttgtgcattttataaaggaactagttcctggccgcgaagaatctctttaagataaacaact 1162615  T
Q  118 tgtttttctcatgatacatttgtctgtcaattatgagattgctgaatttgctgattgcatttatacgacattttgagatgttcagttatatcattatagg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1162614 tgtttttctcatgatacatttgtctgtcaattatgagattgctgaatttgctgattgcatttatacgacattttgagatgttcagttatatcattatagg 1162515  T
Q  218 ctactcaagttgttacaacacgagcttgaaaattattgtctcaaaccccttctcaatctctctatgcaatcctgtctcaaagccttagggatgcagattt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1162514 ctactcaagttgttacaacacgagcttgaaaattattgtctcaaaccccttctcaatctctctatacaatcctgtctcaaagccttagggatgcagattt 1162415  T
Q  318 tgcagcaaaactggctggtttatacaactcttgcaatcaaacatggctagttttacttc 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1162414 tgcagcaaaactggctggtttatacaactcttgcaatcaaacatggctagttttacttc 1162356  T

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Target: chr5; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 144 - 280
Target Start/End: Original strand, 1850468 - 1850604
Alignment:
Q  144 tcaattatgagattgctgaatttgctgattgcatttatacgacattttgagatgttcagttatatcattataggctactcaagttgttacaacacgagct 243  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1850468 tcaattatgagattgctgaatttgctgattgcatttagatgacattttgagatgttcagttatatcattataggctactcaagttgttacaacacgagct 1850567  T
Q  244 tgaaaattattgtctcaaaccccttctcaatctctct 280  Q
    |||||||||||||||||||||||||| ||||||||||    
T  1850568 tgaaaattattgtctcaaaccccttcgcaatctctct 1850604  T

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Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 39400885 - 39400982
Alignment:
Q  23 tttttctgtagtcaacgtcatgctcaaaagcagtttgtgcattttataaaggaactagttcctggccgcgaagaatctctttaagataagcaacttgt 120  Q
    ||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| || |||||||| |||||||||| ||||||||    
T  39400885 tttttctgtagtcaaagtcatgctcaaaagtagtttgtgtattttataaaggaactagttcctggctgcaaagaatctttttaagataaccaacttgt 39400982  T

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Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 63 - 370
Target Start/End: Original strand, 40412480 - 40412778
Alignment:
Q  63 attttataaaggaactagttcctggccgcgaagaatctcttt--aagataagcaacttg-tttttctcatgatacatttgtctgtcaattatgagattgc 159  Q
    ||||||||||||||||||||||||||  | ||||||||||||  ||||||||||||||| |||||||  |||||||||||||  ||||||||||||        
T  40412480 attttataaaggaactagttcctggctactaagaatctctttaaaagataagcaacttgttttttcttgtgatacatttgtccatcaattatgaga---- 40412575  T
Q  160 tgaatttgctgattgcatttatacgacattttgagatgttcagtt------atatcattataggctactcaagttg-------ttacaacacgagcttga 246  Q
         ||||||||| || ||||| || ||| |||| |||||||||      |||||||||||||||| | ||||||       |||||||| ||||||||    
T  40412576 -----ttgctgattacaattatatgatattctgaggtgttcagttatatcaatatcattataggctattgaagttgttgcaacttacaacatgagcttga 40412670  T
Q  247 aaattattgtctcaaaccccttctcaatctctctatgcaatcctgtctcaaagccttagggatgcagattttgcagcaaaactggctggtttatacaact 346  Q
    |||||||||||| ||||||| |||||     | ||   ||     ||||||||||||||||||| ||||||||||||||||    |||||||||||||||    
T  40412671 aaattattgtcttaaacccc-tctca---ggttta---aa-----tctcaaagccttagggatgtagattttgcagcaaaa----ctggtttatacaact 40412754  T

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Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 122 - 199
Target Start/End: Original strand, 40419467 - 40419544
Alignment:
Q  122 tttctcatgatacatttgtctgtcaattatgagattgctgaatttgctgattgcatttatacgacattttgagatgtt 199  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  40419467 tttctcatgatacatttgtccatcaattatgagattgctgaatttgctgattgcaattatacgacattttgaggtgtt 40419544  T

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Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 284 - 343
Target Start/End: Original strand, 1850781 - 1850840
Alignment:
Q  284 caatcctgtctcaaagccttagggatgcagattttgcagcaaaactggctggtttataca 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1850781 caatcctgtctcaaagccttagggatgcagattttgcagcaaaactggctggtttataca 1850840  T

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Target: chr5; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 230 - 370
Target Start/End: Original strand, 39880558 - 39880689
Alignment:
Q  230 ttacaacacgagcttgaaaattattgtctcaaaccccttctcaatctctctatgcaatcctgtctcaaagccttagggatgcagattttgcagcaaaact 329  Q
    |||||||| |||||||||||||||||||| |||||||||| |||||||    |  ||||     ||||||||||||||||| ||||||||||||||||      
T  39880558 ttacaacatgagcttgaaaattattgtcttaaaccccttcacaatctcaggtttaaatc-----tcaaagccttagggatgtagattttgcagcaaaa-- 39880650  T
Q  330 ggctggtttatacaactcttgcaatcaaacatggctagttt 370  Q
      ||||||||||||||||||||| |||||||||||||||||    
T  39880651 --ctggtttatacaactcttgcattcaaacatggctagttt 39880689  T

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Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 76 - 269
Target Start/End: Original strand, 38988459 - 38988658
Alignment:
Q  76 actagttcctggccgcgaagaatctctttaa--gataagcaacttgtttttctcatgatacatttgtctgtcaattatgagattgctgaatttgctgatt 173  Q
    |||||||||||||  ||||||||||||||||  ||||||||||||||||||||  |||||||||||||  ||||||||||||          ||||||||    
T  38988459 actagttcctggctacgaagaatctctttaaaagataagcaacttgtttttcttgtgatacatttgtccatcaattatgaga---------atgctgatt 38988549  T
Q  174 gcatttatacgacattttgagatgttcagtt------atatcattataggctactcaagttg-------ttacaacacgagcttgaaaattattgtctca 260  Q
    ||| ||||| |||||| |||| |||||||||      |||||||||||||||| | ||||||       |||||||| ||||||||| |||||||||| |    
T  38988550 gcaattatatgacattatgaggtgttcagttatatcaatatcattataggctattgaagttgttacaacttacaacatgagcttgaacattattgtctta 38988649  T

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Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 40419394 - 40419460
Alignment:
Q  22 ctttttctgtagtcaacgtcatgctcaaaagcagtttgtgcattttataaaggaactagttcctggc 88  Q
    ||||||||||||| || |||||||||||||| |||||||||||| ||||||||||||||||| ||||    
T  40419394 ctttttctgtagttaaagtcatgctcaaaagtagtttgtgcattgtataaaggaactagttcttggc 40419460  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 376
Target Start/End: Original strand, 40419663 - 40419707
Alignment:
Q  332 ctggtttatacaactcttgcaatcaaacatggctagttttacttc 376  Q
    |||||||||| |||||||||| ||||| |||||||||||||||||    
T  40419663 ctggtttatataactcttgcactcaaatatggctagttttacttc 40419707  T

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Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 125 - 245
Target Start/End: Complemental strand, 25911161 - 25911041
Alignment:
Q  125 ctcatgatacatttgtctgtcaattatgagattgctgaatttgctgattgcatttatacgacattttgagatgttcagttatatcattataggctactca 224  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||| ||||||||||||| |    
T  25911161 ctcatgatacatttgtccatcaattatgagattgctgaatttgctgattgcaattatatgatattttgaggtgttcagttatattattataggctactga 25911062  T
Q  225 agttgttacaacacgagcttg 245  Q
    |||||||||| || |||||||    
T  25911061 agttgttacaccatgagcttg 25911041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 25911232 - 25911177
Alignment:
Q  22 ctttttctgtagtcaacgtcatgctcaaaagcagtttgtgcattttataaaggaac 77  Q
    ||||||||||||  || |||||||||||||| | ||||||||||||||||||||||    
T  25911232 ctttttctgtagataaagtcatgctcaaaagtaatttgtgcattttataaaggaac 25911177  T

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Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 144 - 234
Target Start/End: Original strand, 34401891 - 34401981
Alignment:
Q  144 tcaattatgagattgctgaatttgctgattgcatttatacgacattttgagatgttcagttatatcattataggctactcaagttgttaca 234  Q
    ||||||||||||| | |||| ||||||||| || ||||| |||||||||||  |||||||||||| ||||||||||||| |||||||||||    
T  34401891 tcaattatgagatgggtgaaattgctgatttcaattatatgacattttgaggagttcagttatattattataggctactgaagttgttaca 34401981  T

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