View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13381_high_19 (Length: 343)
Name: NF13381_high_19
Description: NF13381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13381_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 14241300 - 14241624
Alignment:
| Q |
1 |
acagacaaatgtagtcatggctgaagtgtaaagatattttttcaaccagccttgttcggcatccctgagtgcagttattttagatagaaacttcatttcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14241300 |
acagacaaatgtagtcatggctgaagtgtaaagatattttttcaaccagccttgttcggcatccctgagtgcagttattttagatagaaacttcatttcc |
14241399 |
T |
|
| Q |
101 |
catccttgtagtttaaggatcctcatgttccttaaaatttcagacgtggtcttcattctagcatcctttgactccatcaacttatcttgaaacttctctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14241400 |
catccttgtagtttaaggatcctcatgttccttaaaatttcagacgtggttttcattctagcatcctttgactccatcaacttatcttgaaacttctctt |
14241499 |
T |
|
| Q |
201 |
gcaatgatcccaatggaacatttgccaacataaccacaacggttgaaacaaaagtagcaattgaagcgagtccaatgttcttatacaaaattaacaatgc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14241500 |
gcaatgatcccaatggaacatttgccaacataaccacaacggttgaaacaaaagtagcaattgaagcgagtccaatgttcttatacaaaattaacaatgc |
14241599 |
T |
|
| Q |
301 |
caatgtaactttcaaagctagtaac |
325 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
14241600 |
caatgtaactttcaaagctagtaac |
14241624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 3 - 325
Target Start/End: Original strand, 41452317 - 41452639
Alignment:
| Q |
3 |
agacaaatgtagtcatggctgaagtgtaaagatattttttcaaccagccttgttcggcatccctgagtgcagttattttagatagaaacttcatttccca |
102 |
Q |
| |
|
||||||||||||||| ||| ||| |||||| |||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
41452317 |
agacaaatgtagtcacggcgttagtataaagaaattttttcaaccagccttgttcagcgtccctgagcgcagttattttagatagaaacttcatttccca |
41452416 |
T |
|
| Q |
103 |
tccttgtagtttaaggatcctcatgttccttaaaatttcagacgtggtcttcattctagcatcctttgactccatcaacttatcttgaaacttctcttgc |
202 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
41452417 |
tccttgcagtttaaggatcctcatgttccttaaaatttcagatgtggtcttcattcttgtatcctttgactccatcaacttattttgaaacttctcttgc |
41452516 |
T |
|
| Q |
203 |
aatgatcccaatggaacatttgccaacataaccacaacggttgaaacaaaagtagcaattgaagcgagtccaatgttcttatacaaaattaacaatgcca |
302 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | || |||| |||||||| |||||||||||| ||||||| || |||||||||||||||||||||| |
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|
| T |
41452517 |
aatgatcccaatggaacatttgctaacataacaataatagttgcaacaaaagcagcaattgaagcaagtccaagatttttatacaaaattaacaatgcca |
41452616 |
T |
|
| Q |
303 |
atgtaactttcaaagctagtaac |
325 |
Q |
| |
|
|||||||| |||||||| |||| |
|
|
| T |
41452617 |
gtgtaacttgcaaagctactaac |
41452639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 3 - 325
Target Start/End: Original strand, 41439148 - 41439470
Alignment:
| Q |
3 |
agacaaatgtagtcatggctgaagtgtaaagatattttttcaaccagccttgttcggcatccctgagtgcagttattttagatagaaacttcatttccca |
102 |
Q |
| |
|
||||||||||||| | ||| ||| |||||| |||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
41439148 |
agacaaatgtagtaacggcgttagtataaagaaattttttcaaccagccttgttcagcgtccctgagcgcagttattttagatagaaacttcatttccca |
41439247 |
T |
|
| Q |
103 |
tccttgtagtttaaggatcctcatgttccttaaaatttcagacgtggtcttcattctagcatcctttgactccatcaacttatcttgaaacttctcttgc |
202 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||| | ||||||||||||||| |
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|
| T |
41439248 |
tccttgcagtttaaggatcctcatgttccttaaaatttcagatgtggtcttcattcttgtatcctttgactccatcaactttttttgaaacttctcttgt |
41439347 |
T |
|
| Q |
203 |
aatgatcccaatggaacatttgccaacataaccacaacggttgaaacaaaagtagcaattgaagcgagtccaatgttcttatacaaaattaacaatgcca |
302 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | | |||| |||||||| |||||||||||| ||||||| || |||||||||||||||||||||| |
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|
| T |
41439348 |
aatgatcccaatggaacatttgctaacataacaatgatagttgcaacaaaagcagcaattgaagcaagtccaagatttttatacaaaattaacaatgcca |
41439447 |
T |
|
| Q |
303 |
atgtaactttcaaagctagtaac |
325 |
Q |
| |
|
|||||||| |||||||| |||| |
|
|
| T |
41439448 |
gtgtaacttgcaaagctactaac |
41439470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 4 - 320
Target Start/End: Complemental strand, 14372018 - 14371702
Alignment:
| Q |
4 |
gacaaatgtagtcatggctgaagtgtaaagatattttttcaaccagccttgttcggcatccctgagtgcagttattttagatagaaacttcatttcccat |
103 |
Q |
| |
|
|||||| ||||||| || ||||| |||||||| ||||||||||| || |||||||| || ||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
14372018 |
gacaaacgtagtcacagcggaagtataaagatactttttcaaccacccctgttcggcgtctctgagctcagttattttagacagaaacttcatttcccat |
14371919 |
T |
|
| Q |
104 |
ccttgtagtttaaggatcctcatgttccttaaaatttcagacgtggtcttcattctagcatcctttgactccatcaacttatcttgaaacttctcttgca |
203 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| || ||||||||||| | |
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|
| T |
14371918 |
ccttgtagtttgaggatcctcatgtttcttaaaatttcagatgtggtcttcattctagtatcctttgactccatcaacttattatgtaacttctcttgga |
14371819 |
T |
|
| Q |
204 |
atgatcccaatggaacatttgccaacataaccacaacggttgaaacaaaagtagcaattgaagcgagtccaatgttcttatacaaaattaacaatgccaa |
303 |
Q |
| |
|
|||||||| ||||| | ||||||||||||| | | ||||| |||||||| ||||| |||||| ||||||| ||| ||||||||||| ||||||||||| |
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|
| T |
14371818 |
atgatcccgttggaagagttgccaacataacaatgatggttgtaacaaaagcagcaactgaagcaagtccaaggtttttatacaaaatcaacaatgccaa |
14371719 |
T |
|
| Q |
304 |
tgtaactttcaaagcta |
320 |
Q |
| |
|
|||||||| |||||||| |
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|
| T |
14371718 |
tgtaacttgcaaagcta |
14371702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 65 - 231
Target Start/End: Original strand, 22751087 - 22751253
Alignment:
| Q |
65 |
ctgagtgcagttattttagatagaaacttcatttcccatccttgtagtttaaggatcctcatgttccttaaaatttcagacgtggtcttcattctagcat |
164 |
Q |
| |
|
|||||| ||||||| ||||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||| ||||| |||| ||||||||| || |
|
|
| T |
22751087 |
ctgagttcagttatcttagacagaaacttcatttcccatccttgaagtttgagaatcctcatgttccttaaaatctcagatgtggccttcattcttttat |
22751186 |
T |
|
| Q |
165 |
cctttgactccatcaacttatcttgaaacttctcttgcaatgatcccaatggaacatttgccaacat |
231 |
Q |
| |
|
| |||| |||||||||| | ||||||||||||| | | ||| | || ||||||||||||||||| |
|
|
| T |
22751187 |
ctcttgatgccatcaacttgttttgaaacttctctaggattgacactaaaggaacatttgccaacat |
22751253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 22727795 - 22727916
Alignment:
| Q |
92 |
ttcatttcccatccttgtagtttaaggatcctcatgttccttaaaatttcagacgtggtcttcattctagcatcctttgactccatcaacttatcttgaa |
191 |
Q |
| |
|
||||| |||||| |||| |||||||| |||||||||||| ||| ||| |||||||| | ||||||||| ||| || ||||||| |||||| |||||| |
|
|
| T |
22727795 |
ttcatctcccatgcttgaagtttaagaatcctcatgttcattagaatctcagacgtcgccttcattcttttatctttgaactccattaacttaacttgaa |
22727894 |
T |
|
| Q |
192 |
acttctcttgcaatgatcccaa |
213 |
Q |
| |
|
|||||||||||| |||| |||| |
|
|
| T |
22727895 |
acttctcttgcagtgatgccaa |
22727916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 92 - 208
Target Start/End: Complemental strand, 22739188 - 22739072
Alignment:
| Q |
92 |
ttcatttcccatccttgtagtttaaggatcctcatgttccttaaaatttcagacgtggtcttcattctagcatcctttgactccatcaacttatcttgaa |
191 |
Q |
| |
|
||||| |||||| |||| |||||||| |||||||||||| ||| ||| |||||||| | ||||||||| ||| || | ||||| |||||| |||||| |
|
|
| T |
22739188 |
ttcatctcccatgcttgaagtttaagaatcctcatgttcattagaatctcagacgtcgccttcattcttttatctttaaattccattaacttaccttgaa |
22739089 |
T |
|
| Q |
192 |
acttctcttgcaatgat |
208 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
22739088 |
acttctcttgcagtgat |
22739072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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