View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13381_high_2 (Length: 657)

Name: NF13381_high_2
Description: NF13381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13381_high_2
NF13381_high_2
[»] chr8 (1 HSPs)
chr8 (18-647)||(32652699-32653328)


Alignment Details
Target: chr8 (Bit Score: 602; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 18 - 647
Target Start/End: Complemental strand, 32653328 - 32652699
Alignment:
Q  18 gatacatatgactagtaataattgtagatcacgactacaagtctacaactatgcagcatctcaccctgagtatatcctgtgcgtccctgttatcatgtag 117  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  32653328 gatacatatgactagtaataattgtagatcacaactacaagtctacaactatgcagcatctcaccctgagtatatcctgtgcgtccctgttgtcatttag 32653229  T
Q  118 aaattttacactccacatcattgctgctgctgtagtagtctgtccagcaattatcaatgtcaaaagattatccataatctccgagtcatcaagcttttca 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  32653228 aaattttacactccacatcattgctgctgctgtagtagtctgtccagcaattatcaatgtcagaagattatccataatctccgagtcatcaagcttttca 32653129  T
Q  218 ctggctggaaatgagtctctctgcaacatggactgcaggaagtcccctggagactcttctcccctcctacgtctggcaatgatctctctgaaggtttcca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32653128 ctggctggaaatgagtctctctgcaacatggactgcaggaagtcccctggagactcttctcccctcctacgtctggcaatgatctctctgaaggtttcca 32653029  T
Q  318 tgagcctgttacgagcctgcttcatgtatcttctttagttcaaccttatgaaagttcagcgaagaaaagaagaaaaactatgtctgatttttcccttaaa 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32653028 tgagcctgttacgagcctgcttcatgtatcttctttagttcaaccttatgaaagttcagcgaagaaaagaagaaaaactatgtctgattttttccttaaa 32652929  T
Q  418 ttaatcagtacttcataggaagcgtgtaaccgagtcaatcacttaaatttaagtctggtactagtaggcctttctcattgaagaactaataaatcacatt 517  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32652928 ttaatcagtacttcataggaagcgtataaccgagtcaatcacttaaatttaagtctggtactagtaggcctttctcattgaagaactaataaatcacatt 32652829  T
Q  518 tatgcaaatatcactaaccgtgatgcctttatagtatctggtgcctggaatcatgaccggaaaggacaacatggcattagagactgcagtgcagtctttt 617  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32652828 tatgtaaatatcactaaccgtgatgcctttatagtatctggtgcctggaatcatgaccggaaaggacaacatggcattagagactgcagtgcagtctttt 32652729  T
Q  618 tcgatctgtcgcagtaatgaatcctctgtg 647  Q
    ||||||||||||||||||||||||||||||    
T  32652728 tcgatctgtcgcagtaatgaatcctctgtg 32652699  T

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