View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13381_high_6 (Length: 572)
Name: NF13381_high_6
Description: NF13381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13381_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 236 - 504
Target Start/End: Original strand, 52392532 - 52392800
Alignment:
| Q |
236 |
acttttaatttggaatatataaactttatattgaatttggatatggttgcattgggtgagtgcaggtggaccaagagcaactgggcgtttcttaatgaac |
335 |
Q |
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| T |
52392532 |
acttttaatttggaatatataaactttatattgaatttggatatggttgcattgggtgagtgcaggtggaccaagagcaactgggcgtttcttaatgaac |
52392631 |
T |
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| Q |
336 |
ctccagtgatggaagctcctaccagcaagtatgtatcgcagtatcacgtagccaacttgggatcatcaaaattaaacacaggacatggaattagtgcttg |
435 |
Q |
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| T |
52392632 |
ctccagtgatggaagctcctaccagcaagtatgcatcgcagtatcacgtagccaacttgggatcatcaaaattaaacacaggacatggaattagtgcttg |
52392731 |
T |
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| Q |
436 |
atctgaatgatctatctaaatctaattccaccctttacataaatgtaacatatccatgaatgtaatttc |
504 |
Q |
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| T |
52392732 |
atctgaatgatctatctaaatctaattccaccctttacataaatgtaacatatccatgaatgtaatttc |
52392800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 25 - 239
Target Start/End: Original strand, 52392291 - 52392505
Alignment:
| Q |
25 |
ttgataattcaattcgatatttaattggacagcccggcaaatacgaggataccgtgcccttggcccgccgcatgaagaaatcatttggcatggatgttga |
124 |
Q |
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| T |
52392291 |
ttgataattcaattcgatatttaattggacagcccggcaaatacgaggataccgtgcccttggcccgccgcatgaagaaatcatttggcatggatgttga |
52392390 |
T |
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| Q |
125 |
cgaaaatatggagcagcttaaaaatatgaagaaaaatggctggtaaactatcttagttgtttgattcgaatttcggtccatcttttaaaaaatcaatgtt |
224 |
Q |
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| T |
52392391 |
caaaaatatggagcagcttaaaaatatgaagaaaaatggctggtaaactatcttagttgtttgattcgaatttcggtccatcttttaaaaaatcaatgtt |
52392490 |
T |
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| Q |
225 |
ccaattcaactactt |
239 |
Q |
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| T |
52392491 |
ccaattcaactactt |
52392505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 368
Target Start/End: Original strand, 7117127 - 7117203
Alignment:
| Q |
292 |
tgagtgcaggtggaccaagagcaactgggcgtttcttaatgaacctccagtgatggaagctcctaccagcaagtatg |
368 |
Q |
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| T |
7117127 |
tgagtgcaggtggactaagagtaactgggcatttctgaatgagccaccagtaatggaagctgcatccagcaagtatg |
7117203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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