View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13381_low_10 (Length: 537)
Name: NF13381_low_10
Description: NF13381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13381_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 20 - 517
Target Start/End: Original strand, 9466815 - 9467306
Alignment:
| Q |
20 |
cataatcttattgctttattcattcatatatattaatgatttgcaaaaaatatcataactattcttttttaaaatagtaatttatttatcatgaatcatt |
119 |
Q |
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| T |
9466815 |
cataatcttattgctttattcattcatatatattaatgatttgcaaaaaatatcataactattcttttttaaaatagtaatttatttatcatgaatcatt |
9466914 |
T |
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| Q |
120 |
ttgcatcaaaaaaa----tcaaatcatttacnnnnnnnnnnnnnaaggaaatcattaacttcttaactaattattatggtcagattttgtttttaacacc |
215 |
Q |
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| T |
9466915 |
ttgcataaaaaaaaaaaatcaaatcatttactttttttttt---aaggaaatcattaacttcttaactaattattatggtcagattttgtttttaacacc |
9467011 |
T |
|
| Q |
216 |
ataaaggccagaaattttaattctggatgatgatcagaatgggaaaaaatatatattgatgtgtatcagatatctttacgcataac----tatattcatt |
311 |
Q |
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| T |
9467012 |
ataaaggccagaaattttaattctggatgatgatcagaatgggaaaaaatatatattgatgtgtatcagatatctttatgcataactgtatatattcatt |
9467111 |
T |
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| Q |
312 |
gaaccacataaaactataatatgcagcaaaactctctcaaaaaacgtaaacactattgtatttatttttaagattgaatttaaatccaaaacatttagtt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9467112 |
gaaccacataaaactataatatgcagcaaaactctctcaaaaaa------------tgtatttatttttaagattgaatttaaatccaaaacatttagtt |
9467199 |
T |
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| Q |
412 |
aaaccggaaaaccttaggccttatcgtcccatccaagtgtgttgagttaagaatgggtaaattgcaacatgggttggtatttaaaccac-attaatttgt |
510 |
Q |
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| T |
9467200 |
aaaccggaaaaccttaggccttatcgtcccatccaagtgtgttgagttaagaatgggtaaattgcaacatgggttggtatttaaaccacaattagtttgt |
9467299 |
T |
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