View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13381_low_11 (Length: 512)
Name: NF13381_low_11
Description: NF13381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13381_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 422; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Original strand, 35789240 - 35789742
Alignment:
| Q |
1 |
tccatgatgatatccagggttcgtagaccatgatatgttgttttctctccttgtgttatatccatccca---------atttccactatttcttccttga |
91 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35789240 |
tccatgatcatatccagggttcgtagaccatgatatgttgttttctctccttctgttatatccatcccatgtcccccaatttccactatttcttccttga |
35789339 |
T |
|
| Q |
92 |
tacttgttatgaaagtcaccaccatattgctccctctgattccatccttgagaatcattctgaccatttttccatccatattcttttgcagcatgttcaa |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35789340 |
tacttgttatgaaagtcaccaccatattgctccctctgattccatccttgagaatcattctgaccatttttccatccatattcttttgcagcatgttcaa |
35789439 |
T |
|
| Q |
192 |
tggaagcatcatactgtttccaaaagnnnnnnnggttatttccatgttggttcgattcccatcccagagcaacatcatttggttcataaggctttgttaa |
291 |
Q |
| |
|
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35789440 |
tgggagcatcatactgtttccaaaagtttttttggttatttccatgttggttcgattcccatccccgagcaacatcatttggttcataaggctttgttaa |
35789539 |
T |
|
| Q |
292 |
cttttcgtcttctttgtccccccatcctggacccgataaggactgatccaagaagagagaactactgagaatcacgacttcctcgcctttttcttcaatg |
391 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35789540 |
cttttcgtcttcttcgtccccccatcctggacccgataaggactgatccaagaagagagaactactgagaatcacgacttcctcgcctttttcttcaatg |
35789639 |
T |
|
| Q |
392 |
ttgcggcgggcctctacttctctttccacatccagataaagttcagtgttgacgcttgcgttccagtctatatcatctatgtaaatgttaggatcaggcg |
491 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35789640 |
ttgcggcaggcctctacttctctttccacatccagataaagttcagtgtcgacgcttgcgttccagtctatatcatctatgtaaatgttaggatcaggcg |
35789739 |
T |
|
| Q |
492 |
atg |
494 |
Q |
| |
|
||| |
|
|
| T |
35789740 |
atg |
35789742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 2 - 485
Target Start/End: Original strand, 35798869 - 35799376
Alignment:
| Q |
2 |
ccatgatgatatccagggttcgtagaccatgatatgttgttttctctccttgtgttatatccatccca---------atttccactatttcttccttgat |
92 |
Q |
| |
|
||||||||||||||||||||| ||||||| || |||||||||||| || || |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
35798869 |
ccatgatgatatccagggttcttagaccaagacatgttgttttctttctttctgttatatccatcccatgttccccaatttccactatttcttccttgat |
35798968 |
T |
|
| Q |
93 |
acttgttatgaaagtcaccaccatattgctccctctgattccatccttgagaatcattctgaccatttttccatccatattcttttgcagcatgttcaat |
192 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
35798969 |
acttgttatgaaagtcaccaccatatcgctccctctgattccatccctgagaatcattctgaccattttgccatccatgttcttttgcagcatgttcaac |
35799068 |
T |
|
| Q |
193 |
ggaagcatcatactgtttccaaaagnnnnnnnggttatttccatgttggttcgattcccatcccagagcaacatcatttggttcataaggctttgttaac |
292 |
Q |
| |
|
|| |||| |||||||| || ||| |||||| |||||||||| ||||| |||||||||||| ||| |||||||||| |||||||||||||| |
|
|
| T |
35799069 |
gggcgcatgatactgttcacataagtttgtttcattattttcatgttggtttgattcgcatcccagagcagcataatttggttcagaaggctttgttaac |
35799168 |
T |
|
| Q |
293 |
ttttcgtcttctttgtccccccatcctg---------------gacccgataaggactgatccaagaagagagaactactgagaatcacgacttcctcgc |
377 |
Q |
| |
|
||||||||||||| |||||||||||| | |||| || ||||||||| ||||| ||||||||| | |||||||| | |||| | |
|
|
| T |
35799169 |
ttttcgtcttcttcgtccccccatccagtaggtcccaatccaagaccggaagaggactgattcaagaggagagaactgcctagaatcacagccgcctctc |
35799268 |
T |
|
| Q |
378 |
ctttttcttcaatgttgcggcgggcctctacttctctttccacatccagataaagttcagtgttgacgcttgcgttccagtctatatcatctatgtaaat |
477 |
Q |
| |
|
||||||||| |||||| ||||||||||| ||||| ||||||||||| ||| |||||||| | ||| ||||| || | |||| ||||||||||||||| |
|
|
| T |
35799269 |
ctttttcttttatgttgtggcgggcctctgcttctatttccacatcccgatgaagttcagaatcgacacttgcatttgaatctacatcatctatgtaaat |
35799368 |
T |
|
| Q |
478 |
gttaggat |
485 |
Q |
| |
|
|||||||| |
|
|
| T |
35799369 |
gttaggat |
35799376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 247 - 490
Target Start/End: Original strand, 35785646 - 35785886
Alignment:
| Q |
247 |
ttcccatcccagagcaacatcatttggttcataaggctttgttaacttttcgtcttctttgtccccccatcctggacccgataaggactgatccaagaag |
346 |
Q |
| |
|
|||||||||| ||||| ||| ||||||||| | |||||||||| ||||| |||||||||||||||||| ||||| || |||||||||| ||||| | |
|
|
| T |
35785646 |
ttcccatccctgagcagcatagtttggttcagagggctttgttacgttttc---ttctttgtccccccatccaggaccagacaaggactgattcaagagg |
35785742 |
T |
|
| Q |
347 |
agagaactactgagaatcacgacttcctcgcctttttcttcaatgttgcggcgggcctctacttctctttccacatccagataaagttcagtgttgacgc |
446 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| ||||| || |||||||||||||||||| ||||||||||||| |||| ||||||||||| || | | |
|
|
| T |
35785743 |
agagaactaccgagaatcacgatttcctcgggtttttgatccatgttgcggcgggcctctgcttctctttccacctccaaataaagttcagagtcaatac |
35785842 |
T |
|
| Q |
447 |
ttgcgttccagtctatatcatctatgtaaatgttaggatcaggc |
490 |
Q |
| |
|
|||| ||||| |||| ||| || ||||||||||||||||||||| |
|
|
| T |
35785843 |
ttgcattccaatctacatcgtcgatgtaaatgttaggatcaggc |
35785886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 79 - 490
Target Start/End: Original strand, 35760522 - 35760948
Alignment:
| Q |
79 |
atttcttccttgatacttgttatgaaagtcaccaccatattgctccctctgattccatccttgagaatcattctgaccatttttccatccatattctttt |
178 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||| ||| ||||||| || |||||| ||| |||||||||||| |
|
|
| T |
35760522 |
atttcttccttgatacttgttatgcaagtcagcaccatattgctccgtctgattccatccatgataatcattttggccatttcgccaaccatattctttt |
35760621 |
T |
|
| Q |
179 |
gcagcatgttcaatggaagcatcatactgtttccaaaagnnnnnnnggttatttccatgttggttcgattcccatcccagagcaacatcatttggttcat |
278 |
Q |
| |
|
| | | ||| | |||| |||||||| |||| || |||||| ||||||||||||||||||||||| ||||| ||| ||| |||||| |
|
|
| T |
35760622 |
gaatgttcaacaacaggagcacgatactgttcccaagagtttgtttcattattttcatgttggttcgattcccatccctgagcagcataattcggttcag |
35760721 |
T |
|
| Q |
279 |
aaggctttgttaacttttcgtcttctttgtccccccatcctg---------------gacccgataaggactgatccaagaagagagaactactgagaat |
363 |
Q |
| |
|
|||||||||||| | || ||||||| |||||||||||| | |||| || |||||||||| ||||| |||||||||| ||||| |
|
|
| T |
35760722 |
aaggctttgttacttctttttcttcttcgtccccccatccagtaggtccccatccaggaccggaaaaggactgattcaagagaagagaactaccaagaat |
35760821 |
T |
|
| Q |
364 |
cacgacttcctcgcctttttcttcaatgttgcggcgggcctctacttctctttccacatccagataaagttcagtgttgacgcttgcgttccagtctata |
463 |
Q |
| |
|
||| || |||||||||||||||| ||||| |||||||||||| ||||||||||||||||| |||||||||||| || || ||||| ||||| |||| | |
|
|
| T |
35760822 |
cacagctgcctcgcctttttcttccatgttacggcgggcctctgcttctctttccacatcctgataaagttcagggtccacacttgcattccaatctaca |
35760921 |
T |
|
| Q |
464 |
tcatctatgtaaatgttaggatcaggc |
490 |
Q |
| |
|
||||| |||| | ||| ||||||||| |
|
|
| T |
35760922 |
tcatcaatgtgagtgtcgggatcaggc |
35760948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 92 - 490
Target Start/End: Original strand, 35755389 - 35755790
Alignment:
| Q |
92 |
tacttgttatgaaagtcaccaccatattgctccctctgattccatccttgagaatcattctgaccatttttccatccatattcttttgcagcatgttcaa |
191 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||| |||| | ||||||||||| |||| ||||| ||| ||||||| ||||||| | |||| |
|
|
| T |
35755389 |
tacttgttatgcaagtcaccaccatagtgctccctctgaatccacctctgagaatcattgtgactattttgccaaccatattgttttgcatgttcatcaa |
35755488 |
T |
|
| Q |
192 |
tggaagcatcatactgtttccaaaagnnnnnnnggttatttccatgttggttcgattcccatcccagagcaacatcatttggttcataaggctttgttaa |
291 |
Q |
| |
|
| | || | ||| |||| |||| || |||||| ||||||| || |||||||||||| || || ||| |||||| ||| |||||||| | || |
|
|
| T |
35755489 |
ttggaggaagatattgttcccaagagtttgtttcattattttcatgttgatttgattcccatccctgaccagcataatttggctcagaaggctttct-aa |
35755587 |
T |
|
| Q |
292 |
ctt----ttcgtcttctttgtccccccatcctggacccgataaggactgatccaagaagagagaactactgagaatcacgacttcctcgcctttttcttc |
387 |
Q |
| |
|
||| || ||||||| |||||||||||||||||| || ||||| ||| ||||| | ||| ||||||||||||||| | ||||||||||||||||| |
|
|
| T |
35755588 |
cttcttctttttcttcttcgtccccccatcctggacctgaaaaggaatgactcaagagaaaagagctactgagaatcacggcctcctcgcctttttcttc |
35755687 |
T |
|
| Q |
388 |
aatgttgcggcgggcctctacttctctttccacatccagataaagttcagtgttgacgcttgcgttccagtctatatcatctatgtaaatgttaggatca |
487 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||| ||||||| | | |||| ||||| |||| |||||| | ||| |||||||||||| |
|
|
| T |
35755688 |
tatgttgcggcgggctactgcttctctttccacatccagatatagttcaggatcaatagttgcattccaatctacatcatcgaggtatatgttaggatca |
35755787 |
T |
|
| Q |
488 |
ggc |
490 |
Q |
| |
|
||| |
|
|
| T |
35755788 |
ggc |
35755790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 2 - 181
Target Start/End: Original strand, 35765913 - 35766104
Alignment:
| Q |
2 |
ccatgatgatatccagggttcgtagaccatgatatgttgttttctctccttgtgttatatccatccca---------atttccact------atttcttc |
86 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||| |||||||| |||||||||||||||| ||| ||||| |||||||| |
|
|
| T |
35765913 |
ccatgatgatatccagggttcttagaccatgacatgttgt---ctctccttctgttatatccatcccatgttccccaattcccactcccaccatttcttc |
35766009 |
T |
|
| Q |
87 |
cttgatacttgttatgaaagtcaccaccatattgctccctctgattccatccttgagaatcattctgaccatttttccatccatattcttttgca |
181 |
Q |
| |
|
|||||||||||||||| |||| |||||| | ||||||||||| ||| | |||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
35766010 |
cttgatacttgttatgcaagttgccaccaaagcgctccctctgaatccgcctttgagaattattctgcccatttttccatccatattcttttgca |
35766104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 79 - 181
Target Start/End: Original strand, 35785502 - 35785604
Alignment:
| Q |
79 |
atttcttccttgatacttgttatgaaagtcaccaccatattgctccctctgattccatccttgagaatcattctgaccatttttccatccatattctttt |
178 |
Q |
| |
|
||||||||||||||| |||||||| |||| |||||||| | |||||||||| |||| | |||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
35785502 |
atttcttccttgatatttgttatgcaagttgccaccatagttctccctctgaatccacctctgagaatcattctgactatttttccacccatattctttt |
35785601 |
T |
|
| Q |
179 |
gca |
181 |
Q |
| |
|
||| |
|
|
| T |
35785602 |
gca |
35785604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 35755281 - 35755348
Alignment:
| Q |
2 |
ccatgatgatatccagggttcgtagaccatgatatgttgttttctctccttgtgttatatccatccca |
69 |
Q |
| |
|
|||| ||||| | ||||| || |||||||||| |||||||||||||||||| || ||||||||||||| |
|
|
| T |
35755281 |
ccataatgattttcagggctcttagaccatgacatgttgttttctctccttctgctatatccatccca |
35755348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 490
Target Start/End: Original strand, 35766315 - 35766431
Alignment:
| Q |
374 |
tcgcctttttcttcaatgttgcggcgggcctctacttctctttccacatccagataaagttcagtgttgacgcttgcgttccagtctatatcatctatgt |
473 |
Q |
| |
|
|||| ||||||||| |||||| | ||||||| |||| ||||||||||| |||||||||| || || ||| |||||| | | || | ||| || |||| |
|
|
| T |
35766315 |
tcgcgtttttcttccatgttgtcactggcctctgcttcactttccacatcaagataaagttgagggtcgacacttgcggttgaatccacatcgtcgatgt |
35766414 |
T |
|
| Q |
474 |
aaatgttaggatcaggc |
490 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
35766415 |
gaatgttaggatcaggc |
35766431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 35785413 - 35785477
Alignment:
| Q |
5 |
tgatgatatccagggttcgtagaccatgatatgttgttttctctccttgtgttatatccatccca |
69 |
Q |
| |
|
|||||||| ||||||||| |||||| || || |||||||||||| || ||||||| |||||||| |
|
|
| T |
35785413 |
tgatgataaccagggttcatagaccgagacatcttgttttctctctttctgttatacccatccca |
35785477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University