View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13381_low_13 (Length: 495)
Name: NF13381_low_13
Description: NF13381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13381_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 14 - 476
Target Start/End: Original strand, 52367358 - 52367825
Alignment:
| Q |
14 |
agacaaagatcaagaagaaggaagatgaagaaaatccgtacacccagttttgtttaaagtaccacagtgagtgagtctcatctcatcttgcttttaatcg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
52367358 |
agacaaagatcaagaagaaggaagatgaagaaaatccgtacacccagttttgtttaaagtaccacagtgagtgattctcatctcatcttgcttttaatcg |
52367457 |
T |
|
| Q |
114 |
tttcattcctctacaatcacattattcttcccaccccatcactaatttttt-attaacacattctctctggaatgttcgattgatactgatataaattca |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
52367458 |
tttcattcctctacaatcacattattcttcccaccccatcactaatttttttattaacacattctctcttgaatgttcgattgatactgatataaattca |
52367557 |
T |
|
| Q |
213 |
attattatcatta----gataatactctttctcctcctaaccctatcggtaaccgtgaaattaatcttgaattcaatcctcacatatgggcgaagacaca |
308 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52367558 |
attattattattattaagataatactctttctcctcctaaccctatcggtaaccgtgaaattaatcttgaattcaatcctcacatatgggcgaagacaca |
52367657 |
T |
|
| Q |
309 |
caacaacaacctcagccacaaccacaaggggtttcttccgacaacacaatctccgccaccaccgctgtcgactccgtccaaactattatccccgtcgaat |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52367658 |
caacaacaacctcagccacaaccacaaggggtttcttccgacaacacaatctccgccaccaccgctgtcgactccgtccaaactattatccccgtcgaat |
52367757 |
T |
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| Q |
409 |
ccgaactgagcaatgttccaccacacaccaaagcccctgccacaaaaatgcccctccgtcctcgtaag |
476 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52367758 |
ccgaactgagcaatgttccaccacacaccaaagcccctgccacaaaaatgcccctccgtcctcgtaag |
52367825 |
T |
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