View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13381_low_18 (Length: 402)
Name: NF13381_low_18
Description: NF13381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13381_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 33439826 - 33439441
Alignment:
| Q |
1 |
cctaagtcaaagttagtggcttaggggcccatattttttgtcaatcaataatatttataagaannnnnnnnagatatttgttttcggtcaaaaatcgagg |
100 |
Q |
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||||||||||||| || ||||||||||||||||||||||||||| ||||||||||| ||| | |||||||||||||||||||||| |||||| |
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| T |
33439826 |
cctaagtcaaagtcagaggcttaggggcccatattttttgtcaaccaataatatttttaaaatttttttttagatatttgttttcggtcaaaactcgagg |
33439727 |
T |
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| Q |
101 |
acatctttagttttcaaggttttttgtctgcgcttatttttgaatcccttaaacatgtgatctaagtcgagatttaaaagtttatacaaattaagagttg |
200 |
Q |
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| T |
33439726 |
acatctttagttttcaaggctttttgtctgtgcttatttttgaatcccttaaacatgtgatctaagtcgagatttaaaagtttatacaaattaagagttg |
33439627 |
T |
|
| Q |
201 |
gacgtaccatcttgcttcttgcaatgcattgttatattccctccaatcacaattggcgcctttgcaaccagcaggaccaccatagtatctgattgttttt |
300 |
Q |
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| T |
33439626 |
gacgtaccatcttgcttcttgcaatgcattgttatattccctccaatcacaattggcgcctttgcaaccagcaggaccaccatagtatctgattgttttt |
33439527 |
T |
|
| Q |
301 |
gctccatctaggaaaccaccagtacttatgagggtcccatcaggtgcaagtcctccaccggagcaccatggatctgctgttacctg |
386 |
Q |
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| T |
33439526 |
gctccatctaggaaaccaccagtacttatgagggtcccatcaggtgcaagtcctccaccggagcaccatggatctgctgttacctg |
33439441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 353
Target Start/End: Complemental strand, 43342956 - 43342880
Alignment:
| Q |
277 |
ccaccatagtatctgattgtttttgctccatctaggaaaccaccagtacttatgagggtcccatcaggtgcaagtcc |
353 |
Q |
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| T |
43342956 |
ccaccatagtatctgattgatttttccccctccatgaaaccaccagtactcacgagtgtaccgtcaggtgcaagtcc |
43342880 |
T |
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