View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13381_low_2 (Length: 792)
Name: NF13381_low_2
Description: NF13381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13381_low_2 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 750; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 750; E-Value: 0
Query Start/End: Original strand, 19 - 792
Target Start/End: Complemental strand, 11315199 - 11314426
Alignment:
| Q |
19 |
gaataaccaaccaaaagaaccagctcaatgcaactgatgacgtgtcacgtccagctaggatgaagttcaacgccacgtgttgaagaaacttgtccgaata |
118 |
Q |
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| T |
11315199 |
gaataaccaaccaaaagaaccagctcaacgcaactgatgacgtgtcacgtccagctaggatgaagttcaacgccacgtgttgaagaaacttgtccgaata |
11315100 |
T |
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| Q |
119 |
ggattctttcttcctcataaacctagtcaacaagtcatcatgaagaagggacccatctttctgctgactcagcaattctaccttgcgcttctcaatcaca |
218 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11315099 |
ggattctttcttcctcataaacctagtcagcaagtcatcatgaagaagggacccatctttctgctgactcagcaattctaccttgcgcttctcaatcaca |
11315000 |
T |
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| Q |
219 |
ctagacaaatgttggtccacaaaagcaaggcttcggctcaagccaacttccataccaagtccaagccatttcttcaccttccaaaacacctcaggtaata |
318 |
Q |
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| T |
11314999 |
ctagacaaatgttggtccacaaaagcaaggcttcggctcaagccaacttccataccaagtccaagccatttcttcaccttccaaaacacctcaggtaata |
11314900 |
T |
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| Q |
319 |
taaaccgctggagcgtggcttcagtggctcgatcaaaagcggctgcaaaaccgttttcaggaagacccgtggcacacgtctgcgggtctcttccaaaagc |
418 |
Q |
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| T |
11314899 |
taaaccgctggagcgtggcttcagtggctcgatcaaaagcggctgcaaaaccgttttcaggcagacccgtggcacacgtctgcgggtctcttccaaaagc |
11314800 |
T |
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| Q |
419 |
caagccacaaatattgtcaaaagtgagccggagcatcacatcttgtagatccaccggctcaccttgcacctcagctttcttcaaaatcgtgcaaagtcgg |
518 |
Q |
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| T |
11314799 |
caagccacaaatattgtcaaaagtgagccggagcatcacatcttgtagatccaccggctcaccttgcacctcagctttcttcaaaatcgtgcaaagtcga |
11314700 |
T |
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| Q |
519 |
tccttaatggctcggctaacccatctagccatggcttggcgcaaagtacgcgtggtgaattccagcgcggctgtcttgcgctggaacacccacgtgttac |
618 |
Q |
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| T |
11314699 |
tccttaatggctcggctaacccatctagccatggcttggcgcaaagtacgcgtggtgaattccagcgcggctgtcttgcgctggaacacccacgtgttac |
11314600 |
T |
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| Q |
619 |
catcagagttaaagatcccatcacccaacaaatcatgaaacaccgcttgccacgtcggccctttcgggtaactgtcgaaccgggtctttagtatatgctc |
718 |
Q |
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| T |
11314599 |
catcagagttaaagatcccatcacccaacaaatcatgaaacaccgcttgccacgtcggccctttcgggtaattgtcgaaccgagtctttagtatatgctc |
11314500 |
T |
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| Q |
719 |
caaattcctcgggtcgcacgtgacggtcacgagcccttgcttcttggctaaaaatgggattgcacagatgcagg |
792 |
Q |
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| T |
11314499 |
caaattcctcgggtcgcacgtgacggtcacgagcccttgcttcttggctaaaaatgggattgcacagatgcagg |
11314426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 525 - 701
Target Start/End: Original strand, 41065966 - 41066142
Alignment:
| Q |
525 |
atggctcggctaacccatctagccatggcttggcgcaaagtacgcgtggtgaattccagcgcggctgtcttgcgctggaacacccacgtgttaccatcag |
624 |
Q |
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| T |
41065966 |
atggctcggctaacccatcgagccatggcttgtcgtagggtacgagtggtgaactctagtgctgcggttttacgctggaacagccacatgtcaccatctg |
41066065 |
T |
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| Q |
625 |
agttaaagatcccatcacccaacaaatcatgaaacaccgcttgccacgtcggccctttcgggtaactgtcgaaccgg |
701 |
Q |
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| T |
41066066 |
agttaaatataccttctccgagtaagtcatgaaacactgactgccatgttggaccttttgggtaattgtcgaaccgg |
41066142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 287 - 357
Target Start/End: Original strand, 41065728 - 41065798
Alignment:
| Q |
287 |
tttcttcaccttccaaaacacctcaggtaatataaaccgctggagcgtggcttcagtggctcgatcaaaag |
357 |
Q |
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| T |
41065728 |
tttcttcagcttccaaacaatctcaggtaatatgaatcggtggagtgtggcttcagtggcgcgatcaaaag |
41065798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 29669018 - 29668957
Alignment:
| Q |
24 |
accaaccaaaagaaccagctcaatgcaactgatgacgtgtcacgtccagctaggatgaagtt |
85 |
Q |
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| T |
29669018 |
accagccagaagaaccagctgagagcaactgatgacgtgtcccttccagcaaggatgaagtt |
29668957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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